Wall clock time and date at job start Mon Mar 30 2020 06:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35699 * 116.99903 * 2 1 4 4 C 1.38450 * 120.18304 * 0.02562 * 3 2 1 5 5 C 1.38251 * 120.15266 * 180.02562 * 4 3 2 6 6 C 1.38715 * 120.52552 * 0.02562 * 5 4 3 7 7 C 1.50708 * 119.81761 * 179.97438 * 6 5 4 8 8 C 1.52995 * 109.47214 * 299.98433 * 7 6 5 9 9 C 1.53000 * 109.46686 * 59.97866 * 7 6 5 10 10 C 1.37606 * 120.37077 * 359.95679 * 6 5 4 11 11 C 1.40413 * 119.82843 * 0.27802 * 10 6 5 12 12 C 1.41836 * 120.25439 * 179.74530 * 11 10 6 13 13 C 1.38293 * 120.00208 * 34.25542 * 12 11 10 14 14 C 1.38778 * 119.99896 * 7.08721 * 13 12 11 15 15 H 1.08000 * 119.99609 * 10.66877 * 14 13 12 16 16 C 1.40591 * 120.00006 * 190.67439 * 14 13 12 17 17 N 1.30582 * 120.00185 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00085 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47086 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47257 * 119.99587 * 18 16 14 21 21 H 1.48503 * 109.47357 * 240.00227 * 18 16 14 22 22 H 1.08992 * 109.46870 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46874 * 300.00092 * 1 2 3 24 24 H 1.09000 * 109.46795 * 59.99840 * 1 2 3 25 25 H 1.08000 * 119.92253 * 359.97438 * 4 3 2 26 26 H 1.08004 * 119.73905 * 179.97438 * 5 4 3 27 27 H 1.08997 * 109.47047 * 179.97438 * 7 6 5 28 28 H 1.08997 * 109.47669 * 59.99701 * 8 7 6 29 29 H 1.09006 * 109.47152 * 179.97438 * 8 7 6 30 30 H 1.09006 * 109.47200 * 299.99584 * 8 7 6 31 31 H 1.09005 * 109.47340 * 60.00345 * 9 7 6 32 32 H 1.08999 * 109.47441 * 180.02562 * 9 7 6 33 33 H 1.08997 * 109.47689 * 300.00097 * 9 7 6 34 34 H 1.07997 * 120.08713 * 179.97438 * 10 6 5 35 35 H 1.08001 * 120.00440 * 214.25548 * 12 11 10 36 36 H 1.07997 * 120.00458 * 187.08741 * 13 12 11 37 37 H 0.97007 * 120.00111 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2947 2.3726 0.0005 5 6 1.9230 3.6041 0.0000 6 6 3.3076 3.6887 -0.0016 7 6 3.9758 5.0395 -0.0028 8 6 3.5544 5.8160 -1.2519 9 6 3.5564 5.8169 1.2465 10 6 4.0744 2.5461 -0.0018 11 6 3.4522 1.2874 -0.0063 12 6 4.2338 0.1039 -0.0120 13 6 5.4416 0.0696 0.6607 14 6 5.8206 1.1380 1.4612 15 1 5.1083 1.9144 1.6982 16 6 7.1318 1.2098 1.9634 17 7 7.9929 0.2708 1.6771 18 14 7.6422 2.6483 3.0402 19 1 6.4906 3.5699 3.2136 20 1 8.0768 2.1435 4.3674 21 1 8.7648 3.3757 2.3953 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.2161 2.3181 0.0005 26 1 1.3311 4.5075 0.0000 27 1 5.0580 4.9095 -0.0035 28 1 2.4722 5.9460 -1.2511 29 1 4.0374 6.7932 -1.2525 30 1 3.8531 5.2621 -2.1420 31 1 3.8567 5.2638 2.1365 32 1 4.0393 6.7941 1.2456 33 1 2.4742 5.9470 1.2474 34 1 5.1520 2.6173 -0.0035 35 1 3.8858 -0.7706 -0.5416 36 1 6.0900 -0.7886 0.5632 37 1 8.8975 0.3202 2.0239 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714558418.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:02 Heat of formation + Delta-G solvation = -40.646280 kcal Electronic energy + Delta-G solvation = -17768.367720 eV Core-core repulsion = 15088.632545 eV Total energy + Delta-G solvation = -2679.735175 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.85510 -38.75737 -36.89453 -35.42987 -33.78656 -30.44407 -30.14723 -27.88071 -27.86168 -27.09078 -23.90897 -23.10288 -21.41051 -20.09467 -19.23611 -17.98186 -17.09746 -16.80106 -16.38613 -15.89019 -15.31256 -15.08057 -15.04199 -14.46436 -14.24732 -13.97850 -13.42714 -13.41679 -13.12447 -13.06913 -12.85745 -12.75180 -12.52339 -12.15976 -12.05939 -11.82404 -11.67503 -11.50648 -11.43511 -11.34296 -10.93694 -10.26730 -9.17592 -8.92537 -8.51894 -6.25524 0.53103 0.84333 1.28370 1.33380 1.50512 1.92891 2.13170 2.74889 3.05472 3.47391 4.01461 4.06700 4.27921 4.31380 4.44732 4.46243 4.50218 4.71736 4.74683 4.81416 4.90039 4.91476 4.98586 5.05425 5.06352 5.13950 5.16106 5.29638 5.42663 5.50887 5.58000 5.65030 5.78479 5.91258 6.21273 6.23588 6.32672 6.51747 6.84568 6.97606 7.07296 8.11105 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015637 B = 0.009448 C = 0.006451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.232306 B = 2962.755319 C = 4339.569359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.342 6.342 3 C 0.042 3.958 4 C -0.192 4.192 5 C -0.138 4.138 6 C -0.103 4.103 7 C -0.056 4.056 8 C -0.133 4.133 9 C -0.136 4.136 10 C -0.136 4.136 11 C 0.009 3.991 12 C -0.419 4.419 13 C 0.050 3.950 14 C -0.443 4.443 15 H 0.091 0.909 16 C 0.031 3.969 17 N -0.820 5.820 18 Si 0.980 3.020 19 H -0.253 1.253 20 H -0.258 1.258 21 H -0.254 1.254 22 H 0.110 0.890 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.140 0.860 26 H 0.138 0.862 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.042 0.958 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.115 0.885 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.031 10.257 -0.223 13.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.257 6.257 3 C -0.002 4.002 4 C -0.211 4.211 5 C -0.156 4.156 6 C -0.103 4.103 7 C -0.074 4.074 8 C -0.190 4.190 9 C -0.194 4.194 10 C -0.155 4.155 11 C 0.008 3.992 12 C -0.440 4.440 13 C 0.029 3.971 14 C -0.469 4.469 15 H 0.109 0.891 16 C -0.187 4.187 17 N -0.444 5.444 18 Si 0.799 3.201 19 H -0.176 1.176 20 H -0.182 1.182 21 H -0.178 1.178 22 H 0.129 0.871 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.157 0.843 26 H 0.155 0.845 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.133 0.867 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.685 9.953 -0.194 12.577 hybrid contribution 0.321 -0.461 0.246 0.613 sum -7.364 9.493 0.052 12.014 Atomic orbital electron populations 1.23186 0.77844 1.04586 1.01565 1.85984 1.22247 1.27853 1.89626 1.19524 0.92031 0.84533 1.04158 1.21154 0.99768 0.91893 1.08286 1.20682 0.93474 0.96695 1.04741 1.19838 0.93931 0.94584 1.01961 1.20090 0.98864 0.91366 0.97096 1.21775 1.01964 0.99516 0.95747 1.21803 1.02052 0.99581 0.95916 1.21317 0.99655 0.90981 1.03502 1.17478 0.89604 0.94259 0.97822 1.19919 1.03009 0.98111 1.22965 1.20509 0.91693 0.95157 0.89748 1.20173 0.96329 1.08002 1.22444 0.89071 1.27302 0.96111 0.99690 0.95633 1.69565 1.06386 1.32502 1.35962 0.85168 0.79606 0.77421 0.77940 1.17563 1.18198 1.17834 0.87138 0.92413 0.92189 0.84262 0.84453 0.92184 0.91707 0.90899 0.93837 0.94423 0.90803 0.91572 0.86711 0.92137 0.91835 0.88889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.65 9.81 113.37 1.11 1.76 16 2 O -0.34 -14.80 9.89 -90.19 -0.89 -15.69 16 3 C 0.04 1.90 6.71 22.98 0.15 2.06 16 4 C -0.19 -7.15 9.03 22.32 0.20 -6.94 16 5 C -0.14 -4.81 8.70 22.39 0.19 -4.62 16 6 C -0.10 -3.98 4.78 -19.90 -0.10 -4.07 16 7 C -0.06 -1.72 3.09 -11.54 -0.04 -1.76 16 8 C -0.13 -3.31 9.00 71.98 0.65 -2.66 16 9 C -0.14 -3.59 9.00 71.98 0.65 -2.94 16 10 C -0.14 -6.46 7.00 22.65 0.16 -6.30 16 11 C 0.01 0.47 5.29 -21.20 -0.11 0.36 16 12 C -0.42 -23.75 9.33 23.17 0.22 -23.54 16 13 C 0.05 2.90 9.35 22.41 0.21 3.11 16 14 C -0.44 -24.08 6.80 22.97 0.16 -23.93 16 15 H 0.09 4.97 5.21 -2.91 -0.02 4.95 16 16 C 0.03 1.55 5.51 85.45 0.47 2.02 16 17 N -0.82 -41.94 12.88 21.95 0.28 -41.66 16 18 Si 0.98 37.15 29.57 68.60 2.03 39.18 16 19 H -0.25 -9.53 7.11 99.48 0.71 -8.83 16 20 H -0.26 -9.23 7.11 99.48 0.71 -8.53 16 21 H -0.25 -9.01 7.11 99.48 0.71 -8.30 16 22 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 23 H 0.06 1.48 7.66 -2.38 -0.02 1.46 16 24 H 0.06 1.50 7.66 -2.39 -0.02 1.48 16 25 H 0.14 4.13 6.29 -2.91 -0.02 4.11 16 26 H 0.14 3.79 7.06 -2.91 -0.02 3.77 16 27 H 0.06 1.99 7.86 -2.39 -0.02 1.97 16 28 H 0.06 1.45 7.37 -2.39 -0.02 1.44 16 29 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 1.55 7.37 -2.39 -0.02 1.53 16 34 H 0.12 5.80 5.90 -2.91 -0.02 5.78 16 35 H 0.06 3.50 7.99 -2.91 -0.02 3.48 16 36 H 0.06 3.79 7.45 -2.91 -0.02 3.77 16 37 H 0.30 13.50 8.29 -92.70 -0.77 12.73 16 Total: -1.00 -63.42 303.87 6.39 -57.02 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: 1.05 Total: 28.60 kcal Atomic # 6 Polarization: -71.38 SS G_CDS: 3.93 Total: -67.46 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.28 Total: -41.66 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.89 Total: -15.69 kcal Atomic # 14 Polarization: 37.15 SS G_CDS: 2.03 Total: 39.18 kcal Total: -63.42 6.39 -57.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714558418.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.376 kcal (2) G-P(sol) polarization free energy of solvation -63.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds