Wall clock time and date at job start Mon Mar 30 2020 06:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35727 * 117.00284 * 2 1 4 4 C 1.39202 * 119.84215 * 359.97438 * 3 2 1 5 5 C 1.36534 * 120.16098 * 179.97438 * 4 3 2 6 6 C 1.40509 * 119.83970 * 0.02562 * 5 4 3 7 7 C 1.46151 * 120.15839 * 179.97438 * 6 5 4 8 8 C 1.38264 * 120.00264 * 211.99483 * 7 6 5 9 9 C 1.38782 * 120.00122 * 7.51218 * 8 7 6 10 10 H 1.08001 * 119.99646 * 11.05186 * 9 8 7 11 11 C 1.40587 * 120.00423 * 191.05548 * 9 8 7 12 12 N 1.30595 * 119.99366 * 359.97438 * 11 9 8 13 13 Si 1.86792 * 120.00160 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47076 * 90.00131 * 13 11 9 15 15 H 1.48503 * 109.47236 * 209.99631 * 13 11 9 16 16 H 1.48500 * 109.47395 * 329.99826 * 13 11 9 17 17 C 1.40480 * 119.68622 * 359.77946 * 6 5 4 18 18 C 1.36572 * 119.83608 * 0.45201 * 17 6 5 19 19 C 1.50708 * 119.91806 * 179.79865 * 18 17 6 20 20 C 1.53001 * 109.46685 * 299.72071 * 19 18 17 21 21 C 1.52989 * 109.46956 * 59.72454 * 19 18 17 22 22 H 1.08996 * 109.46896 * 59.99625 * 1 2 3 23 23 H 1.08993 * 109.47385 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46930 * 300.00247 * 1 2 3 25 25 H 1.08010 * 119.91896 * 359.97438 * 4 3 2 26 26 H 1.08000 * 120.08298 * 179.97438 * 5 4 3 27 27 H 1.07996 * 119.99615 * 31.99847 * 7 6 5 28 28 H 1.08004 * 120.00248 * 187.51842 * 8 7 6 29 29 H 0.97001 * 119.99526 * 179.97438 * 12 11 9 30 30 H 1.08000 * 120.07777 * 180.24873 * 17 6 5 31 31 H 1.09004 * 109.46505 * 179.72847 * 19 18 17 32 32 H 1.09006 * 109.46609 * 180.02562 * 20 19 18 33 33 H 1.08995 * 109.46929 * 60.00874 * 20 19 18 34 34 H 1.08997 * 109.47737 * 299.99933 * 20 19 18 35 35 H 1.08995 * 109.47702 * 299.99766 * 21 19 18 36 36 H 1.08998 * 109.47382 * 60.00091 * 21 19 18 37 37 H 1.09006 * 109.46843 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 1.2840 2.3747 -0.0005 5 6 1.8971 3.5946 0.0000 6 6 3.3001 3.6720 0.0005 7 6 3.9636 4.9741 0.0005 8 6 5.1826 5.1290 -0.6334 9 6 5.7021 4.0955 -1.4004 10 1 5.0846 3.2454 -1.6502 11 6 7.0321 4.1552 -1.8520 12 7 7.7786 5.1834 -1.5502 13 14 7.7310 2.7645 -2.8849 14 1 7.4917 3.0474 -4.3229 15 1 9.1912 2.6510 -2.6392 16 1 7.0660 1.4897 -2.5138 17 6 4.0619 2.4917 0.0052 18 6 3.4351 1.2783 -0.0001 19 6 4.2506 0.0110 0.0003 20 6 5.1331 -0.0279 -1.2490 21 6 5.1330 -0.0272 1.2495 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.2056 2.3137 -0.0014 26 1 1.3052 4.4980 -0.0009 27 1 3.5018 5.8154 0.4958 28 1 5.7306 6.0541 -0.5317 29 1 8.6963 5.2244 -1.8615 30 1 5.1406 2.5438 0.0097 31 1 3.5829 -0.8506 0.0005 32 1 5.7226 -0.9448 -1.2489 33 1 5.8007 0.8336 -1.2491 34 1 4.5044 -0.0008 -2.1390 35 1 5.8006 0.8344 1.2494 36 1 4.5043 0.0006 2.1395 37 1 5.7225 -0.9441 1.2501 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714560035.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:57 Heat of formation + Delta-G solvation = -26.234511 kcal Electronic energy + Delta-G solvation = -17988.074713 eV Core-core repulsion = 15308.964479 eV Total energy + Delta-G solvation = -2679.110233 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.48079 -37.03671 -34.99814 -34.22533 -31.65168 -29.20363 -28.12890 -26.89851 -26.60681 -24.99467 -22.53567 -21.38028 -19.40277 -18.71280 -17.37995 -16.63055 -15.67673 -15.15456 -15.01519 -14.18836 -13.83443 -13.51721 -13.18664 -13.02383 -12.78964 -12.40431 -12.33016 -11.97698 -11.57026 -11.47710 -11.31154 -11.12526 -11.01249 -10.74812 -10.63505 -10.35035 -10.11970 -9.92883 -9.71985 -9.50226 -9.18459 -8.16501 -7.82032 -7.08089 -6.75469 -4.32828 2.29339 2.44473 2.89346 2.98186 3.03591 3.72682 3.79083 3.97375 4.81152 5.34193 5.36941 5.38399 5.46398 5.51747 5.66843 5.79276 5.81463 5.98547 6.12062 6.24133 6.31011 6.40855 6.49936 6.53792 6.61600 6.73208 6.80203 6.88393 6.96202 7.15461 7.17072 7.32489 7.48748 7.75176 7.85098 7.95975 8.21594 8.32362 8.48866 8.85035 9.03783 9.92481 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022169 B = 0.008330 C = 0.006733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.733123 B = 3360.672439 C = 4157.329060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.325 6.325 3 C 0.046 3.954 4 C -0.187 4.187 5 C -0.150 4.150 6 C 0.034 3.966 7 C -0.414 4.414 8 C 0.072 3.928 9 C -0.432 4.432 10 H 0.096 0.904 11 C 0.071 3.929 12 N -0.792 5.792 13 Si 0.900 3.100 14 H -0.266 1.266 15 H -0.275 1.275 16 H -0.240 1.240 17 C -0.114 4.114 18 C -0.093 4.093 19 C -0.046 4.046 20 C -0.148 4.148 21 C -0.141 4.141 22 H 0.045 0.955 23 H 0.086 0.914 24 H 0.045 0.955 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.288 0.712 30 H 0.141 0.859 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.898 -8.483 0.848 9.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.240 6.240 3 C 0.003 3.997 4 C -0.206 4.206 5 C -0.169 4.169 6 C 0.034 3.966 7 C -0.436 4.436 8 C 0.051 3.949 9 C -0.459 4.459 10 H 0.114 0.886 11 C -0.150 4.150 12 N -0.415 5.415 13 Si 0.723 3.277 14 H -0.190 1.190 15 H -0.200 1.200 16 H -0.163 1.163 17 C -0.132 4.132 18 C -0.094 4.094 19 C -0.064 4.064 20 C -0.205 4.205 21 C -0.198 4.198 22 H 0.064 0.936 23 H 0.104 0.896 24 H 0.064 0.936 25 H 0.123 0.877 26 H 0.122 0.878 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.158 0.842 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.542 -8.549 0.814 9.715 hybrid contribution -0.011 -0.124 -0.521 0.535 sum -4.553 -8.673 0.293 9.800 Atomic orbital electron populations 1.22801 0.80427 1.02280 1.00593 1.85893 1.19573 1.28119 1.90418 1.18659 0.91586 0.83186 1.06275 1.20581 0.98135 0.92838 1.09027 1.20749 0.94769 0.95656 1.05685 1.18888 0.91170 0.93868 0.92704 1.20880 1.03550 0.94490 1.24658 1.20495 0.90817 0.95635 0.87973 1.20124 0.95426 1.06770 1.23579 0.88583 1.26413 0.97747 0.96528 0.94328 1.69529 1.08834 1.27892 1.35283 0.86436 0.78506 0.82370 0.80353 1.19049 1.19969 1.16301 1.21209 1.00992 0.90016 1.00995 1.18768 0.89664 0.95325 1.05623 1.19862 0.95834 0.95644 0.95059 1.22008 0.99533 1.01691 0.97285 1.21832 0.99341 1.01275 0.97348 0.93593 0.89566 0.93628 0.87667 0.87767 0.90536 0.89850 0.90140 0.84198 0.90826 0.93490 0.91349 0.93084 0.92165 0.93073 0.93366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.81 101.05 0.99 1.45 16 2 O -0.33 -5.81 9.24 -18.89 -0.17 -5.99 16 3 C 0.05 0.93 6.68 -38.88 -0.26 0.67 16 4 C -0.19 -3.69 8.97 -39.84 -0.36 -4.05 16 5 C -0.15 -3.25 9.76 -39.34 -0.38 -3.63 16 6 C 0.03 0.81 5.45 -105.02 -0.57 0.24 16 7 C -0.41 -10.46 9.97 -36.40 -0.36 -10.82 16 8 C 0.07 1.88 9.37 -39.37 -0.37 1.51 16 9 C -0.43 -10.93 6.79 -38.49 -0.26 -11.20 16 10 H 0.10 2.44 5.15 -52.49 -0.27 2.16 16 11 C 0.07 1.70 5.51 -17.19 -0.09 1.60 16 12 N -0.79 -19.46 12.88 55.58 0.72 -18.74 16 13 Si 0.90 17.75 29.56 -169.99 -5.03 12.72 16 14 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 15 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 16 H -0.24 -4.54 5.24 56.52 0.30 -4.25 16 17 C -0.11 -2.60 6.09 -39.34 -0.24 -2.84 16 18 C -0.09 -1.93 4.77 -104.88 -0.50 -2.44 16 19 C -0.05 -0.82 3.05 -91.77 -0.28 -1.10 16 20 C -0.15 -2.59 9.00 37.16 0.33 -2.26 16 21 C -0.14 -2.30 9.00 37.15 0.33 -1.97 16 22 H 0.05 0.58 7.65 -51.93 -0.40 0.18 16 23 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.05 0.57 7.65 -51.92 -0.40 0.17 16 25 H 0.11 1.76 6.27 -52.48 -0.33 1.44 16 26 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 27 H 0.08 1.88 8.06 -52.49 -0.42 1.45 16 28 H 0.08 2.22 7.46 -52.48 -0.39 1.83 16 29 H 0.29 6.39 8.29 -40.82 -0.34 6.05 16 30 H 0.14 3.30 4.89 -52.49 -0.26 3.05 16 31 H 0.07 1.30 6.98 -51.93 -0.36 0.93 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 1.30 5.52 -51.93 -0.29 1.01 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 1.04 7.35 -51.93 -0.38 0.65 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 299.39 15.07 4.51 4.51 Total: -1.00 -26.56 299.39 -7.27 -33.83 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -5.27 Total: 8.50 kcal Atomic # 6 Polarization: -32.80 SS G_CDS: -2.02 Total: -34.82 kcal Atomic # 7 Polarization: -19.46 SS G_CDS: 0.72 Total: -18.74 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.17 Total: -5.99 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.72 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -26.56 -7.27 -33.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714560035.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.593 kcal (2) G-P(sol) polarization free energy of solvation -26.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds