Wall clock time and date at job start Mon Mar 30 2020 06:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35727 * 117.00284 * 2 1 4 4 C 1.39202 * 119.84215 * 359.97438 * 3 2 1 5 5 C 1.36534 * 120.16098 * 179.97438 * 4 3 2 6 6 C 1.40509 * 119.83970 * 0.02562 * 5 4 3 7 7 C 1.46151 * 120.15839 * 179.97438 * 6 5 4 8 8 C 1.38264 * 120.00264 * 211.99483 * 7 6 5 9 9 C 1.38782 * 120.00122 * 7.51218 * 8 7 6 10 10 H 1.08001 * 119.99646 * 11.05186 * 9 8 7 11 11 C 1.40587 * 120.00423 * 191.05548 * 9 8 7 12 12 N 1.30595 * 119.99366 * 359.97438 * 11 9 8 13 13 Si 1.86792 * 120.00160 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47076 * 90.00131 * 13 11 9 15 15 H 1.48503 * 109.47236 * 209.99631 * 13 11 9 16 16 H 1.48500 * 109.47395 * 329.99826 * 13 11 9 17 17 C 1.40480 * 119.68622 * 359.77946 * 6 5 4 18 18 C 1.36572 * 119.83608 * 0.45201 * 17 6 5 19 19 C 1.50708 * 119.91806 * 179.79865 * 18 17 6 20 20 C 1.53001 * 109.46685 * 299.72071 * 19 18 17 21 21 C 1.52989 * 109.46956 * 59.72454 * 19 18 17 22 22 H 1.08996 * 109.46896 * 59.99625 * 1 2 3 23 23 H 1.08993 * 109.47385 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46930 * 300.00247 * 1 2 3 25 25 H 1.08010 * 119.91896 * 359.97438 * 4 3 2 26 26 H 1.08000 * 120.08298 * 179.97438 * 5 4 3 27 27 H 1.07996 * 119.99615 * 31.99847 * 7 6 5 28 28 H 1.08004 * 120.00248 * 187.51842 * 8 7 6 29 29 H 0.97001 * 119.99526 * 179.97438 * 12 11 9 30 30 H 1.08000 * 120.07777 * 180.24873 * 17 6 5 31 31 H 1.09004 * 109.46505 * 179.72847 * 19 18 17 32 32 H 1.09006 * 109.46609 * 180.02562 * 20 19 18 33 33 H 1.08995 * 109.46929 * 60.00874 * 20 19 18 34 34 H 1.08997 * 109.47737 * 299.99933 * 20 19 18 35 35 H 1.08995 * 109.47702 * 299.99766 * 21 19 18 36 36 H 1.08998 * 109.47382 * 60.00091 * 21 19 18 37 37 H 1.09006 * 109.46843 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2093 0.0000 4 6 1.2840 2.3747 -0.0005 5 6 1.8971 3.5946 0.0000 6 6 3.3001 3.6720 0.0005 7 6 3.9636 4.9741 0.0005 8 6 5.1826 5.1290 -0.6334 9 6 5.7021 4.0955 -1.4004 10 1 5.0846 3.2454 -1.6502 11 6 7.0321 4.1552 -1.8520 12 7 7.7786 5.1834 -1.5502 13 14 7.7310 2.7645 -2.8849 14 1 7.4917 3.0474 -4.3229 15 1 9.1912 2.6510 -2.6392 16 1 7.0660 1.4897 -2.5138 17 6 4.0619 2.4917 0.0052 18 6 3.4351 1.2783 -0.0001 19 6 4.2506 0.0110 0.0003 20 6 5.1331 -0.0279 -1.2490 21 6 5.1330 -0.0272 1.2495 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.2056 2.3137 -0.0014 26 1 1.3052 4.4980 -0.0009 27 1 3.5018 5.8154 0.4958 28 1 5.7306 6.0541 -0.5317 29 1 8.6963 5.2244 -1.8615 30 1 5.1406 2.5438 0.0097 31 1 3.5829 -0.8506 0.0005 32 1 5.7226 -0.9448 -1.2489 33 1 5.8007 0.8336 -1.2491 34 1 4.5044 -0.0008 -2.1390 35 1 5.8006 0.8344 1.2494 36 1 4.5043 0.0006 2.1395 37 1 5.7225 -0.9441 1.2501 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714560035.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:56 Heat of formation + Delta-G solvation = -38.672416 kcal Electronic energy + Delta-G solvation = -17988.614061 eV Core-core repulsion = 15308.964479 eV Total energy + Delta-G solvation = -2679.649581 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.01602 -38.55267 -36.61936 -35.92836 -33.45851 -30.73992 -29.81273 -28.27804 -27.93601 -26.73010 -24.08020 -23.07599 -20.97981 -20.46554 -18.99757 -18.35934 -17.18588 -16.67626 -16.42835 -15.80949 -15.25929 -15.16333 -14.68789 -14.57080 -14.21924 -14.07479 -13.88875 -13.46623 -13.13228 -12.86138 -12.79400 -12.68885 -12.41835 -12.38611 -11.97535 -11.89963 -11.75100 -11.51790 -11.41416 -11.09237 -10.97586 -10.01178 -9.46927 -8.88945 -8.49756 -6.24529 0.57348 0.78009 1.29836 1.35906 1.50998 1.94215 2.15200 2.65448 3.06377 3.49320 3.90285 4.06303 4.25744 4.37110 4.42622 4.48633 4.56189 4.73717 4.76425 4.79125 4.83641 4.85774 4.99607 5.05523 5.07192 5.11708 5.17930 5.25925 5.43821 5.45270 5.47375 5.61861 5.77892 5.95191 6.10862 6.24149 6.36960 6.53257 6.80149 6.91390 7.09871 8.14239 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022169 B = 0.008330 C = 0.006733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.733123 B = 3360.672439 C = 4157.329060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.332 6.332 3 C 0.058 3.942 4 C -0.187 4.187 5 C -0.153 4.153 6 C -0.002 4.002 7 C -0.428 4.428 8 C 0.049 3.951 9 C -0.448 4.448 10 H 0.093 0.907 11 C 0.034 3.966 12 N -0.824 5.824 13 Si 0.963 3.037 14 H -0.262 1.262 15 H -0.263 1.263 16 H -0.229 1.229 17 C -0.117 4.117 18 C -0.105 4.105 19 C -0.044 4.044 20 C -0.147 4.147 21 C -0.137 4.137 22 H 0.054 0.946 23 H 0.119 0.881 24 H 0.055 0.945 25 H 0.140 0.860 26 H 0.114 0.886 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.298 0.702 30 H 0.124 0.876 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.046 0.954 35 H 0.043 0.957 36 H 0.050 0.950 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.960 -11.525 0.417 12.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.247 6.247 3 C 0.014 3.986 4 C -0.206 4.206 5 C -0.171 4.171 6 C -0.003 4.003 7 C -0.449 4.449 8 C 0.028 3.972 9 C -0.475 4.475 10 H 0.111 0.889 11 C -0.184 4.184 12 N -0.448 5.448 13 Si 0.782 3.218 14 H -0.187 1.187 15 H -0.187 1.187 16 H -0.151 1.151 17 C -0.135 4.135 18 C -0.106 4.106 19 C -0.062 4.062 20 C -0.204 4.204 21 C -0.195 4.195 22 H 0.072 0.928 23 H 0.137 0.863 24 H 0.074 0.926 25 H 0.158 0.842 26 H 0.132 0.868 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.142 0.858 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.626 -11.583 0.399 12.883 hybrid contribution 0.122 0.752 -0.312 0.823 sum -5.505 -10.831 0.087 12.150 Atomic orbital electron populations 1.23196 0.77634 1.04909 1.01455 1.85893 1.22368 1.26622 1.89844 1.18831 0.91642 0.84306 1.03829 1.20889 0.99964 0.91815 1.07915 1.20928 0.93944 0.97165 1.05080 1.18996 0.92512 0.93463 0.95282 1.20988 1.03704 0.95432 1.24798 1.20495 0.91610 0.95517 0.89547 1.20146 0.96460 1.06537 1.24331 0.88890 1.27232 0.97357 0.98852 0.95008 1.69566 1.09607 1.29486 1.36107 0.85509 0.78295 0.79580 0.78441 1.18702 1.18702 1.15126 1.21058 1.00258 0.90681 1.01527 1.19078 0.90743 0.95724 1.05023 1.19917 0.95969 0.94355 0.95975 1.21992 0.99337 1.02227 0.96824 1.21802 0.99104 1.01967 0.96591 0.92760 0.86272 0.92595 0.84218 0.86787 0.91130 0.91840 0.89127 0.85840 0.89840 0.90657 0.93304 0.93504 0.93821 0.93078 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.81 113.37 1.11 1.61 16 2 O -0.33 -10.68 9.24 -90.49 -0.84 -11.52 16 3 C 0.06 2.20 6.68 22.72 0.15 2.35 16 4 C -0.19 -6.95 8.97 22.10 0.20 -6.76 16 5 C -0.15 -6.54 9.76 22.43 0.22 -6.32 16 6 C 0.00 -0.11 5.45 -20.12 -0.11 -0.22 16 7 C -0.43 -22.75 9.97 24.33 0.24 -22.51 16 8 C 0.05 2.74 9.37 22.41 0.21 2.95 16 9 C -0.45 -23.61 6.79 22.97 0.16 -23.46 16 10 H 0.09 4.88 5.15 -2.91 -0.01 4.87 16 11 C 0.03 1.65 5.51 85.45 0.47 2.12 16 12 N -0.82 -41.64 12.88 21.95 0.28 -41.36 16 13 Si 0.96 36.21 29.56 68.60 2.03 38.24 16 14 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 15 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 16 H -0.23 -8.11 5.24 99.48 0.52 -7.59 16 17 C -0.12 -5.42 6.09 22.43 0.14 -5.28 16 18 C -0.11 -4.24 4.77 -20.03 -0.10 -4.34 16 19 C -0.04 -1.48 3.05 -11.54 -0.04 -1.52 16 20 C -0.15 -4.82 9.00 71.98 0.65 -4.17 16 21 C -0.14 -4.24 9.00 71.98 0.65 -3.59 16 22 H 0.05 1.13 7.65 -2.39 -0.02 1.11 16 23 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.06 1.14 7.65 -2.38 -0.02 1.12 16 25 H 0.14 4.15 6.27 -2.91 -0.02 4.13 16 26 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 27 H 0.07 3.67 8.06 -2.91 -0.02 3.65 16 28 H 0.06 3.65 7.46 -2.91 -0.02 3.63 16 29 H 0.30 13.42 8.29 -92.71 -0.77 12.66 16 30 H 0.12 6.06 4.89 -2.91 -0.01 6.05 16 31 H 0.08 2.67 6.98 -2.39 -0.02 2.65 16 32 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 33 H 0.05 1.79 5.52 -2.39 -0.01 1.78 16 34 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.04 1.48 7.35 -2.39 -0.02 1.46 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -58.87 299.39 6.30 -52.58 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: 0.87 Total: 31.19 kcal Atomic # 6 Polarization: -73.08 SS G_CDS: 3.95 Total: -69.13 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 0.28 Total: -41.36 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -0.84 Total: -11.52 kcal Atomic # 14 Polarization: 36.21 SS G_CDS: 2.03 Total: 38.24 kcal Total: -58.87 6.30 -52.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714560035.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.904 kcal (2) G-P(sol) polarization free energy of solvation -58.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds