Wall clock time and date at job start Mon Mar 30 2020 05:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 115.56435 * 2 1 4 4 C 1.53073 * 117.49260 * 214.28809 * 2 1 3 5 5 C 1.53002 * 59.98738 * 252.51346 * 4 2 1 6 6 H 1.08994 * 117.49568 * 107.49923 * 5 4 2 7 7 C 1.52990 * 117.50244 * 252.50067 * 5 4 2 8 8 O 1.42895 * 109.47322 * 243.74596 * 7 5 4 9 9 C 1.35672 * 117.00606 * 179.97438 * 8 7 5 10 10 C 1.39313 * 119.82084 * 179.97438 * 9 8 7 11 11 C 1.36436 * 120.18310 * 179.97438 * 10 9 8 12 12 C 1.40835 * 119.81586 * 0.02562 * 11 10 9 13 13 C 1.41209 * 120.18089 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00066 * 334.86833 * 13 12 11 15 15 C 1.39893 * 120.00049 * 154.87268 * 13 12 11 16 16 N 1.30884 * 119.99716 * 334.02177 * 15 13 12 17 17 Si 1.86797 * 120.00148 * 154.29432 * 15 13 12 18 18 H 1.48496 * 109.47102 * 179.72381 * 17 15 13 19 19 H 1.48497 * 109.47303 * 299.72286 * 17 15 13 20 20 H 1.48501 * 109.47051 * 59.72215 * 17 15 13 21 21 C 1.40835 * 119.63926 * 0.25413 * 12 11 10 22 22 C 1.36443 * 119.81038 * 359.44356 * 21 12 11 23 23 H 1.08995 * 109.47394 * 274.31174 * 1 2 3 24 24 H 1.08998 * 109.47107 * 34.30962 * 1 2 3 25 25 H 1.09001 * 109.47503 * 154.31103 * 1 2 3 26 26 H 1.08998 * 109.47056 * 205.68689 * 3 2 1 27 27 H 1.09003 * 109.46935 * 325.69070 * 3 2 1 28 28 H 1.09000 * 109.46830 * 85.68381 * 3 2 1 29 29 H 1.09009 * 117.51291 * 145.04098 * 4 2 1 30 30 H 1.09000 * 117.51679 * 359.97438 * 4 2 1 31 31 H 1.09005 * 109.47618 * 123.74201 * 7 5 4 32 32 H 1.09006 * 109.47177 * 3.74500 * 7 5 4 33 33 H 1.07995 * 119.90542 * 359.97438 * 10 9 8 34 34 H 1.08002 * 120.09073 * 180.02562 * 11 10 9 35 35 H 0.97003 * 120.00205 * 354.56099 * 16 15 13 36 36 H 1.07998 * 120.09297 * 179.72191 * 21 12 11 37 37 H 1.07997 * 119.90687 * 180.32120 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2366 -1.1219 -0.7650 5 6 2.2364 -1.1210 0.7651 6 1 1.6112 -1.8583 1.2686 7 6 3.5489 -0.7760 1.4715 8 8 3.9982 -1.9068 2.2207 9 6 5.1577 -1.7670 2.9112 10 6 5.6496 -2.8325 3.6620 11 6 6.8151 -2.7003 4.3588 12 6 7.5211 -1.4823 4.3180 13 6 8.7279 -1.3368 5.0367 14 1 8.9156 -1.9490 5.9064 15 6 9.6802 -0.3997 4.6221 16 7 9.7336 -0.0323 3.3671 17 14 10.8806 0.3215 5.8583 18 1 11.7841 1.2785 5.1706 19 1 10.1276 1.0303 6.9240 20 1 11.6844 -0.7709 6.4632 21 6 7.0138 -0.4083 3.5613 22 6 5.8500 -0.5589 2.8652 23 1 -0.3634 0.0773 1.0247 24 1 -0.3633 0.8488 -0.5792 25 1 -0.3634 -0.9261 -0.4455 26 1 3.1824 1.3084 -0.4454 27 1 1.5812 2.0743 -0.5793 28 1 2.2772 1.7413 1.0248 29 1 3.1719 -0.8767 -1.2682 30 1 1.6115 -1.8599 -1.2677 31 1 3.3886 0.0659 2.1451 32 1 4.3017 -0.5093 0.7296 33 1 5.1068 -3.7656 3.6926 34 1 7.1953 -3.5273 4.9401 35 1 9.1671 -0.4664 2.7101 36 1 7.5468 0.5304 3.5285 37 1 5.4623 0.2619 2.2803 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722890294.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:53 Heat of formation + Delta-G solvation = -29.835664 kcal Electronic energy + Delta-G solvation = -17091.153869 eV Core-core repulsion = 14411.887478 eV Total energy + Delta-G solvation = -2679.266391 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.82835 -39.55362 -38.11976 -35.38767 -31.75971 -31.33202 -30.35911 -28.76371 -27.67562 -26.40396 -23.38822 -22.72178 -21.81151 -19.90896 -19.67483 -18.71995 -17.01153 -16.62242 -16.44408 -15.76325 -15.43647 -15.33498 -15.00466 -14.58832 -14.33310 -14.08213 -13.74612 -13.56756 -13.34686 -13.18061 -12.88289 -12.85421 -12.66549 -12.31105 -12.03763 -11.97794 -11.84398 -11.46562 -11.39277 -10.85762 -10.73409 -10.58431 -9.81292 -9.22780 -9.03737 -6.35671 0.79735 0.86104 1.51831 1.63811 1.81176 2.33152 2.35350 2.64584 2.79976 3.48602 3.67612 3.76538 3.84168 4.08867 4.13360 4.18276 4.22731 4.40376 4.52268 4.66313 4.73798 4.75245 4.84796 4.88376 4.99534 5.00691 5.02929 5.04379 5.15624 5.23988 5.33399 5.40049 5.41738 5.73881 5.76133 5.77218 6.14497 6.21639 6.59298 6.86431 6.97579 8.05562 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.040096 B = 0.004360 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.148723 B = 6419.884443 C = 6868.432159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.108 4.108 3 C -0.124 4.124 4 C -0.165 4.165 5 C -0.163 4.163 6 H 0.110 0.890 7 C 0.098 3.902 8 O -0.333 6.333 9 C -0.009 4.009 10 C -0.109 4.109 11 C -0.206 4.206 12 C 0.047 3.953 13 C -0.561 4.561 14 H 0.073 0.927 15 C 0.003 3.997 16 N -0.822 5.822 17 Si 1.117 2.883 18 H -0.272 1.272 19 H -0.264 1.264 20 H -0.257 1.257 21 C -0.205 4.205 22 C -0.158 4.158 23 H 0.060 0.940 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.124 0.876 34 H 0.111 0.889 35 H 0.281 0.719 36 H 0.093 0.907 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.803 2.266 -5.982 14.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.109 4.109 3 C -0.181 4.181 4 C -0.202 4.202 5 C -0.181 4.181 6 H 0.128 0.872 7 C 0.023 3.977 8 O -0.250 6.250 9 C -0.053 4.053 10 C -0.127 4.127 11 C -0.225 4.225 12 C 0.044 3.956 13 C -0.590 4.590 14 H 0.091 0.909 15 C -0.212 4.212 16 N -0.446 5.446 17 Si 0.934 3.066 18 H -0.196 1.196 19 H -0.189 1.189 20 H -0.182 1.182 21 C -0.224 4.224 22 C -0.177 4.177 23 H 0.079 0.921 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.075 0.925 29 H 0.110 0.890 30 H 0.129 0.871 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.142 0.858 34 H 0.130 0.870 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.705 3.204 -5.896 13.492 hybrid contribution -0.951 -1.101 -0.254 1.476 sum -12.656 2.103 -6.150 14.228 Atomic orbital electron populations 1.21392 0.90110 1.03076 1.02446 1.21791 0.95995 0.91005 1.02070 1.21450 1.00289 0.94191 1.02178 1.23461 1.02707 1.01440 0.92544 1.22224 0.97010 1.03986 0.94860 0.87241 1.22137 0.94562 0.87588 0.93462 1.85790 1.37408 1.39656 1.62098 1.18666 0.89335 0.95612 1.01711 1.19977 0.96815 0.97354 0.98579 1.20781 0.98295 0.97146 1.06281 1.17996 0.94017 0.91281 0.92288 1.20654 1.02652 1.22162 1.13488 0.90882 1.28422 1.00034 0.93231 0.99492 1.70607 1.33962 1.37196 1.02867 0.83006 0.73700 0.77040 0.72827 1.19633 1.18905 1.18177 1.20724 0.98025 0.98278 1.05423 1.20732 0.97186 0.96794 1.02969 0.92077 0.90465 0.91639 0.92873 0.89994 0.92505 0.88977 0.87094 0.92856 0.93286 0.85799 0.87048 0.90726 0.88847 0.86444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 9.85 71.98 0.71 -1.03 16 2 C -0.11 -2.17 2.70 -52.15 -0.14 -2.31 16 3 C -0.12 -2.38 8.86 71.98 0.64 -1.74 16 4 C -0.16 -3.50 9.47 30.62 0.29 -3.21 16 5 C -0.16 -4.21 5.77 -10.79 -0.06 -4.27 16 6 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 7 C 0.10 3.20 4.09 71.98 0.29 3.50 16 8 O -0.33 -13.68 10.12 -89.90 -0.91 -14.59 16 9 C -0.01 -0.44 6.71 22.79 0.15 -0.29 16 10 C -0.11 -5.06 9.92 22.11 0.22 -4.84 16 11 C -0.21 -10.35 9.74 22.48 0.22 -10.13 16 12 C 0.05 2.57 5.30 -21.28 -0.11 2.46 16 13 C -0.56 -30.93 8.97 23.40 0.21 -30.72 16 14 H 0.07 3.90 7.96 -2.91 -0.02 3.88 16 15 C 0.00 0.17 4.92 85.23 0.42 0.59 16 16 N -0.82 -45.38 12.33 21.82 0.27 -45.11 16 17 Si 1.12 43.75 30.00 68.60 2.06 45.80 16 18 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 19 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 20 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 21 C -0.20 -10.92 7.91 22.49 0.18 -10.74 16 22 C -0.16 -7.52 8.96 22.11 0.20 -7.32 16 23 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.08 0.95 7.92 -2.39 -0.02 0.94 16 25 H 0.06 0.91 7.90 -2.39 -0.02 0.89 16 26 H 0.05 1.08 7.90 -2.39 -0.02 1.06 16 27 H 0.08 1.23 7.92 -2.39 -0.02 1.21 16 28 H 0.06 1.15 7.84 -2.39 -0.02 1.13 16 29 H 0.09 2.02 7.94 -2.38 -0.02 2.00 16 30 H 0.11 1.98 8.05 -2.39 -0.02 1.96 16 31 H 0.05 1.74 7.28 -2.38 -0.02 1.72 16 32 H 0.05 1.62 7.38 -2.38 -0.02 1.60 16 33 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 34 H 0.11 5.23 8.06 -2.91 -0.02 5.20 16 35 H 0.28 16.17 6.71 -92.71 -0.62 15.55 16 36 H 0.09 5.17 6.50 -2.91 -0.02 5.15 16 37 H 0.12 4.94 6.27 -2.91 -0.02 4.92 16 Total: -1.00 -61.07 306.93 5.81 -55.25 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 1.19 Total: 28.70 kcal Atomic # 6 Polarization: -73.27 SS G_CDS: 3.21 Total: -70.06 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: 0.27 Total: -45.11 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.91 Total: -14.59 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.06 Total: 45.80 kcal Total: -61.07 5.81 -55.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722890294.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.416 kcal (2) G-P(sol) polarization free energy of solvation -61.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds