Wall clock time and date at job start Mon Mar 30 2020 05:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47102 * 2 1 4 4 C 1.50696 * 109.47082 * 120.00120 * 2 1 3 5 5 C 1.38403 * 119.82788 * 119.99386 * 4 2 1 6 6 C 1.37887 * 120.17514 * 179.72107 * 5 4 2 7 7 C 1.39858 * 119.82494 * 0.26404 * 6 5 4 8 8 C 1.47163 * 120.17211 * 179.97438 * 7 6 5 9 9 O 1.21249 * 119.99974 * 359.97438 * 8 7 6 10 10 C 1.50707 * 119.99863 * 179.97438 * 8 7 6 11 11 H 1.09000 * 109.47213 * 330.00163 * 10 8 7 12 12 C 1.53001 * 109.46801 * 90.00018 * 10 8 7 13 13 C 1.50691 * 109.47044 * 209.99783 * 10 8 7 14 14 H 1.08000 * 120.00253 * 0.02562 * 13 10 8 15 15 C 1.37887 * 120.00038 * 179.97438 * 13 10 8 16 16 N 1.31515 * 120.00048 * 180.02562 * 15 13 10 17 17 Si 1.86797 * 119.99638 * 0.02562 * 15 13 10 18 18 H 1.48503 * 109.47083 * 90.00235 * 17 15 13 19 19 H 1.48502 * 109.47151 * 209.99714 * 17 15 13 20 20 H 1.48499 * 109.47589 * 329.99918 * 17 15 13 21 21 C 1.39854 * 119.65579 * 359.97438 * 7 6 5 22 22 C 1.37892 * 119.82228 * 0.02562 * 21 7 6 23 23 H 1.09007 * 109.46959 * 300.00334 * 1 2 3 24 24 H 1.09005 * 109.47309 * 59.99746 * 1 2 3 25 25 H 1.08991 * 109.47435 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47015 * 239.99571 * 2 1 3 27 27 H 1.08995 * 109.47277 * 60.00362 * 3 2 1 28 28 H 1.09008 * 109.46693 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47561 * 299.99763 * 3 2 1 30 30 H 1.08002 * 119.91492 * 0.02562 * 5 4 2 31 31 H 1.07994 * 120.09284 * 180.27884 * 6 5 4 32 32 H 1.09000 * 109.47119 * 60.00087 * 12 10 8 33 33 H 1.09000 * 109.47107 * 180.02562 * 12 10 8 34 34 H 1.08998 * 109.47215 * 299.99861 * 12 10 8 35 35 H 0.96996 * 119.99830 * 180.02562 * 16 15 13 36 36 H 1.07999 * 120.09106 * 180.02562 * 21 7 6 37 37 H 1.08007 * 119.90906 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8277 -1.8355 1.0993 6 6 3.2960 -2.4877 2.2202 7 6 2.9607 -2.0128 3.4923 8 6 3.4558 -2.7033 4.6938 9 8 4.1559 -3.6869 4.5825 10 6 3.0925 -2.1878 6.0626 11 1 2.9539 -1.1076 6.0191 12 6 1.7946 -2.8502 6.5290 13 6 4.1993 -2.5136 7.0320 14 1 5.0780 -3.0408 6.6911 15 6 4.0905 -2.1377 8.3542 16 7 5.0566 -2.4216 9.2002 17 14 2.5709 -1.2253 8.9437 18 1 1.5501 -2.2043 9.3963 19 1 2.9362 -0.3334 10.0735 20 1 2.0182 -0.4128 7.8304 21 6 2.1524 -0.8782 3.6164 22 6 1.6920 -0.2371 2.4857 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 3.0863 -2.2006 0.1163 31 1 3.9202 -3.3628 2.1164 32 1 1.9332 -3.9305 6.5726 33 1 1.5316 -2.4771 7.5188 34 1 0.9940 -2.6146 5.8278 35 1 4.9799 -2.1575 10.1303 36 1 1.8895 -0.5052 4.5953 37 1 1.0681 0.6394 2.5800 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033426645.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:15 Heat of formation + Delta-G solvation = -27.876415 kcal Electronic energy + Delta-G solvation = -17413.820264 eV Core-core repulsion = 14734.638832 eV Total energy + Delta-G solvation = -2679.181432 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.79511 -38.16409 -35.20458 -33.90467 -31.53706 -30.65797 -29.77974 -27.33002 -25.19779 -24.73450 -22.56731 -22.23675 -20.14559 -18.77736 -17.07552 -16.16972 -15.69904 -15.10777 -14.86185 -14.29803 -14.05764 -13.85661 -13.56354 -13.39902 -13.22023 -12.72468 -12.61283 -12.47692 -12.23604 -11.98015 -11.74265 -11.32565 -11.27981 -10.98021 -10.88803 -10.70463 -10.59442 -10.22070 -9.67309 -9.13102 -8.81970 -8.63940 -8.53714 -8.51037 -6.08235 -4.08660 1.02831 1.55181 3.06089 3.23709 3.30325 3.35826 4.10107 4.36554 4.51101 4.64755 4.79988 5.01317 5.08561 5.11917 5.22766 5.27721 5.42519 5.50597 5.54918 5.63425 5.74285 5.77966 5.91709 6.04171 6.05664 6.09640 6.14513 6.21973 6.38261 6.48426 6.56154 6.63987 6.66229 6.88947 7.06611 7.17182 7.60344 8.40687 8.54480 9.02325 9.50495 11.04866 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.032976 B = 0.005545 C = 0.005117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.904251 B = 5047.962879 C = 5471.070307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.058 4.058 3 C -0.145 4.145 4 C -0.061 4.061 5 C -0.134 4.134 6 C -0.068 4.068 7 C -0.157 4.157 8 C 0.406 3.594 9 O -0.451 6.451 10 C -0.030 4.030 11 H 0.050 0.950 12 C -0.141 4.141 13 C -0.509 4.509 14 H 0.084 0.916 15 C 0.071 3.929 16 N -0.896 5.896 17 Si 0.886 3.114 18 H -0.277 1.277 19 H -0.295 1.295 20 H -0.266 1.266 21 C -0.070 4.070 22 C -0.131 4.131 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.122 0.878 31 H 0.130 0.870 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.035 0.965 35 H 0.265 0.735 36 H 0.135 0.865 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.158 6.905 -17.337 21.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.077 4.077 3 C -0.202 4.202 4 C -0.061 4.061 5 C -0.152 4.152 6 C -0.086 4.086 7 C -0.158 4.158 8 C 0.283 3.717 9 O -0.325 6.325 10 C -0.049 4.049 11 H 0.068 0.932 12 C -0.198 4.198 13 C -0.547 4.547 14 H 0.102 0.898 15 C -0.130 4.130 16 N -0.533 5.533 17 Si 0.716 3.284 18 H -0.204 1.204 19 H -0.223 1.223 20 H -0.191 1.191 21 C -0.088 4.088 22 C -0.149 4.149 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.095 0.905 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.140 0.860 31 H 0.148 0.852 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.153 0.847 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.711 6.393 -17.201 20.762 hybrid contribution -0.787 0.530 0.525 1.085 sum -10.498 6.923 -16.676 20.886 Atomic orbital electron populations 1.21862 0.94302 1.02085 1.01903 1.20159 0.95984 0.96116 0.95406 1.21862 1.01404 0.95021 1.01902 1.20023 0.96423 0.95046 0.94634 1.20964 0.99572 0.96252 0.98429 1.21441 0.96882 0.98801 0.91445 1.21033 1.01077 0.98153 0.95575 1.22807 0.76206 0.82384 0.90287 1.90394 1.29040 1.23761 1.89278 1.19598 0.96128 0.97364 0.91800 0.93191 1.22027 0.96340 1.01782 0.99651 1.20874 1.03523 1.37871 0.92401 0.89753 1.24979 0.96187 0.95343 0.96534 1.69886 1.32611 1.46734 1.04114 0.86875 0.83338 0.79862 0.78329 1.20442 1.22275 1.19097 1.21617 0.94381 0.93571 0.99255 1.20914 1.01574 1.00649 0.91756 0.92300 0.92485 0.92486 0.90513 0.92282 0.92417 0.92485 0.86040 0.85166 0.92276 0.93227 0.94632 0.92513 0.84716 0.85925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.00 37.16 0.33 -0.83 16 2 C -0.06 -0.53 3.09 -91.77 -0.28 -0.81 16 3 C -0.14 -1.20 9.01 37.16 0.33 -0.87 16 4 C -0.06 -0.73 4.79 -104.50 -0.50 -1.23 16 5 C -0.13 -1.73 9.65 -39.65 -0.38 -2.12 16 6 C -0.07 -1.07 9.60 -39.10 -0.38 -1.45 16 7 C -0.16 -2.84 5.87 -105.06 -0.62 -3.46 16 8 C 0.41 9.07 6.17 -30.68 -0.19 8.88 16 9 O -0.45 -11.34 15.95 5.58 0.09 -11.25 16 10 C -0.03 -0.70 1.67 -92.92 -0.15 -0.86 16 11 H 0.05 1.12 5.53 -51.93 -0.29 0.84 16 12 C -0.14 -3.03 8.65 37.16 0.32 -2.71 16 13 C -0.51 -14.74 8.90 -34.44 -0.31 -15.04 16 14 H 0.08 2.75 7.38 -52.49 -0.39 2.36 16 15 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 16 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 17 Si 0.89 21.43 24.37 -169.99 -4.14 17.29 16 18 H -0.28 -6.53 6.87 56.52 0.39 -6.15 16 19 H -0.30 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.27 -5.92 6.53 56.52 0.37 -5.55 16 21 C -0.07 -1.09 9.37 -39.10 -0.37 -1.46 16 22 C -0.13 -1.68 8.68 -39.65 -0.34 -2.02 16 23 H 0.06 0.48 7.36 -51.93 -0.38 0.09 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.63 7.86 -51.93 -0.41 0.23 16 27 H 0.06 0.49 7.38 -51.93 -0.38 0.11 16 28 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.12 1.26 7.94 -52.49 -0.42 0.84 16 31 H 0.13 2.07 7.65 -52.49 -0.40 1.66 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 34 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.14 2.05 6.36 -52.49 -0.33 1.72 16 37 H 0.12 1.29 7.07 -52.48 -0.37 0.92 16 LS Contribution 299.65 15.07 4.52 4.52 Total: -1.00 -32.05 299.65 -6.65 -38.70 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -5.26 Total: -0.33 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: -2.63 Total: -22.00 kcal Atomic # 7 Polarization: -27.69 SS G_CDS: 0.77 Total: -26.92 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.14 Total: 17.29 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.05 -6.65 -38.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033426645.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.822 kcal (2) G-P(sol) polarization free energy of solvation -32.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds