Wall clock time and date at job start Mon Mar 30 2020 05:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47102 * 2 1 4 4 C 1.50696 * 109.47082 * 120.00120 * 2 1 3 5 5 C 1.38403 * 119.82788 * 119.99386 * 4 2 1 6 6 C 1.37887 * 120.17514 * 179.72107 * 5 4 2 7 7 C 1.39858 * 119.82494 * 0.26404 * 6 5 4 8 8 C 1.47163 * 120.17211 * 179.97438 * 7 6 5 9 9 O 1.21249 * 119.99974 * 359.97438 * 8 7 6 10 10 C 1.50707 * 119.99863 * 179.97438 * 8 7 6 11 11 H 1.09000 * 109.47213 * 330.00163 * 10 8 7 12 12 C 1.53001 * 109.46801 * 90.00018 * 10 8 7 13 13 C 1.50691 * 109.47044 * 209.99783 * 10 8 7 14 14 H 1.08000 * 120.00253 * 0.02562 * 13 10 8 15 15 C 1.37887 * 120.00038 * 179.97438 * 13 10 8 16 16 N 1.31515 * 120.00048 * 180.02562 * 15 13 10 17 17 Si 1.86797 * 119.99638 * 0.02562 * 15 13 10 18 18 H 1.48503 * 109.47083 * 90.00235 * 17 15 13 19 19 H 1.48502 * 109.47151 * 209.99714 * 17 15 13 20 20 H 1.48499 * 109.47589 * 329.99918 * 17 15 13 21 21 C 1.39854 * 119.65579 * 359.97438 * 7 6 5 22 22 C 1.37892 * 119.82228 * 0.02562 * 21 7 6 23 23 H 1.09007 * 109.46959 * 300.00334 * 1 2 3 24 24 H 1.09005 * 109.47309 * 59.99746 * 1 2 3 25 25 H 1.08991 * 109.47435 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47015 * 239.99571 * 2 1 3 27 27 H 1.08995 * 109.47277 * 60.00362 * 3 2 1 28 28 H 1.09008 * 109.46693 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47561 * 299.99763 * 3 2 1 30 30 H 1.08002 * 119.91492 * 0.02562 * 5 4 2 31 31 H 1.07994 * 120.09284 * 180.27884 * 6 5 4 32 32 H 1.09000 * 109.47119 * 60.00087 * 12 10 8 33 33 H 1.09000 * 109.47107 * 180.02562 * 12 10 8 34 34 H 1.08998 * 109.47215 * 299.99861 * 12 10 8 35 35 H 0.96996 * 119.99830 * 180.02562 * 16 15 13 36 36 H 1.07999 * 120.09106 * 180.02562 * 21 7 6 37 37 H 1.08007 * 119.90906 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8277 -1.8355 1.0993 6 6 3.2960 -2.4877 2.2202 7 6 2.9607 -2.0128 3.4923 8 6 3.4558 -2.7033 4.6938 9 8 4.1559 -3.6869 4.5825 10 6 3.0925 -2.1878 6.0626 11 1 2.9539 -1.1076 6.0191 12 6 1.7946 -2.8502 6.5290 13 6 4.1993 -2.5136 7.0320 14 1 5.0780 -3.0408 6.6911 15 6 4.0905 -2.1377 8.3542 16 7 5.0566 -2.4216 9.2002 17 14 2.5709 -1.2253 8.9437 18 1 1.5501 -2.2043 9.3963 19 1 2.9362 -0.3334 10.0735 20 1 2.0182 -0.4128 7.8304 21 6 2.1524 -0.8782 3.6164 22 6 1.6920 -0.2371 2.4857 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 3.0863 -2.2006 0.1163 31 1 3.9202 -3.3628 2.1164 32 1 1.9332 -3.9305 6.5726 33 1 1.5316 -2.4771 7.5188 34 1 0.9940 -2.6146 5.8278 35 1 4.9799 -2.1575 10.1303 36 1 1.8895 -0.5052 4.5953 37 1 1.0681 0.6394 2.5800 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033426645.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:15 Heat of formation + Delta-G solvation = -47.294261 kcal Electronic energy + Delta-G solvation = -17414.662285 eV Core-core repulsion = 14734.638832 eV Total energy + Delta-G solvation = -2680.023453 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.12485 -39.60811 -36.16023 -35.87289 -33.50195 -31.88748 -30.93744 -27.91173 -27.21213 -26.18516 -23.82947 -23.53175 -21.16566 -20.29763 -18.96535 -17.73957 -17.25882 -16.46885 -16.13567 -15.71245 -15.44701 -15.18259 -14.79831 -14.57497 -14.34378 -14.32514 -13.96452 -13.70748 -13.54735 -13.24386 -12.88343 -12.80523 -12.59557 -12.25279 -12.11922 -11.96678 -11.73046 -11.52073 -11.48569 -11.24245 -10.80359 -10.29072 -9.92497 -9.66988 -8.31907 -6.40118 -0.24719 0.45206 1.31828 1.37438 1.49552 1.57922 2.31812 2.85926 3.02158 3.23487 3.70846 3.84119 4.04288 4.17262 4.32238 4.36738 4.39928 4.48971 4.53968 4.55529 4.62755 4.79929 4.88787 4.90296 4.96676 5.05236 5.06403 5.10351 5.20902 5.35353 5.37893 5.42422 5.45960 5.47249 5.59813 5.68251 5.98763 6.22218 6.67102 6.78831 7.24084 8.85894 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.032976 B = 0.005545 C = 0.005117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.904251 B = 5047.962879 C = 5471.070307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.057 4.057 3 C -0.145 4.145 4 C -0.046 4.046 5 C -0.131 4.131 6 C -0.078 4.078 7 C -0.189 4.189 8 C 0.404 3.596 9 O -0.502 6.502 10 C -0.034 4.034 11 H 0.072 0.928 12 C -0.137 4.137 13 C -0.526 4.526 14 H 0.021 0.979 15 C 0.009 3.991 16 N -0.951 5.951 17 Si 0.957 3.043 18 H -0.263 1.263 19 H -0.295 1.295 20 H -0.226 1.226 21 C -0.072 4.072 22 C -0.125 4.125 23 H 0.060 0.940 24 H 0.074 0.926 25 H 0.051 0.949 26 H 0.089 0.911 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.150 0.850 31 H 0.117 0.883 32 H 0.041 0.959 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.269 0.731 36 H 0.140 0.860 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.759 9.711 -19.590 25.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 C -0.202 4.202 4 C -0.046 4.046 5 C -0.149 4.149 6 C -0.097 4.097 7 C -0.190 4.190 8 C 0.285 3.715 9 O -0.380 6.380 10 C -0.053 4.053 11 H 0.090 0.910 12 C -0.194 4.194 13 C -0.563 4.563 14 H 0.040 0.960 15 C -0.188 4.188 16 N -0.591 5.591 17 Si 0.782 3.218 18 H -0.189 1.189 19 H -0.223 1.223 20 H -0.148 1.148 21 C -0.090 4.090 22 C -0.143 4.143 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.070 0.930 26 H 0.107 0.893 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.167 0.833 31 H 0.135 0.865 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.158 0.842 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.328 9.209 -19.488 25.342 hybrid contribution 0.415 -0.346 1.083 1.211 sum -12.913 8.862 -18.405 24.167 Atomic orbital electron populations 1.21867 0.93151 1.02118 1.02952 1.20257 0.96802 0.96354 0.94117 1.21874 1.00924 0.94459 1.02953 1.20487 0.94296 0.93952 0.95859 1.21255 0.98937 0.96164 0.98518 1.21471 0.97307 0.99002 0.91893 1.20652 1.04129 1.00033 0.94146 1.23089 0.75083 0.81702 0.91611 1.90368 1.31609 1.26116 1.89912 1.19623 0.95386 0.98752 0.91586 0.91005 1.21943 0.96202 1.00504 1.00739 1.21057 1.03550 1.37494 0.94245 0.96017 1.26045 1.00285 0.96244 0.96249 1.70073 1.35635 1.48625 1.04737 0.85725 0.78489 0.78896 0.78733 1.18871 1.22286 1.14845 1.21706 0.93938 0.92723 1.00660 1.21238 1.01055 1.01007 0.90989 0.92066 0.90755 0.92980 0.89291 0.92117 0.93234 0.90681 0.83258 0.86470 0.93950 0.93122 0.90222 0.92259 0.84216 0.82801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.00 71.98 0.65 -0.99 16 2 C -0.06 -0.77 3.09 -11.54 -0.04 -0.80 16 3 C -0.14 -1.76 9.01 71.98 0.65 -1.11 16 4 C -0.05 -0.92 4.79 -19.79 -0.09 -1.02 16 5 C -0.13 -3.05 9.65 22.23 0.21 -2.84 16 6 C -0.08 -2.48 9.60 22.58 0.22 -2.26 16 7 C -0.19 -6.75 5.87 -20.15 -0.12 -6.87 16 8 C 0.40 18.72 6.17 28.03 0.17 18.89 16 9 O -0.50 -27.20 15.95 -2.93 -0.05 -27.24 16 10 C -0.03 -1.63 1.67 -12.29 -0.02 -1.66 16 11 H 0.07 3.10 5.53 -2.39 -0.01 3.09 16 12 C -0.14 -5.67 8.65 71.98 0.62 -5.05 16 13 C -0.53 -32.03 8.90 25.60 0.23 -31.80 16 14 H 0.02 1.54 7.38 -2.91 -0.02 1.52 16 15 C 0.01 0.51 5.45 84.66 0.46 0.97 16 16 N -0.95 -61.55 13.96 21.45 0.30 -61.25 16 17 Si 0.96 43.47 24.37 68.60 1.67 45.14 16 18 H -0.26 -11.30 6.87 99.48 0.68 -10.62 16 19 H -0.30 -13.36 7.11 99.48 0.71 -12.65 16 20 H -0.23 -8.75 6.53 99.48 0.65 -8.10 16 21 C -0.07 -2.06 9.37 22.58 0.21 -1.85 16 22 C -0.13 -2.70 8.68 22.23 0.19 -2.51 16 23 H 0.06 0.68 7.36 -2.38 -0.02 0.67 16 24 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.09 1.04 7.86 -2.39 -0.02 1.02 16 27 H 0.06 0.73 7.38 -2.39 -0.02 0.71 16 28 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.15 2.60 7.94 -2.91 -0.02 2.58 16 31 H 0.12 3.90 7.65 -2.91 -0.02 3.88 16 32 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.05 2.08 3.27 -2.39 -0.01 2.07 16 34 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.27 16.05 8.31 -92.71 -0.77 15.27 16 36 H 0.14 3.77 6.36 -2.91 -0.02 3.75 16 37 H 0.15 2.39 7.07 -2.91 -0.02 2.37 16 Total: -1.00 -75.95 299.65 6.24 -69.71 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.97 Total: 12.53 kcal Atomic # 6 Polarization: -42.24 SS G_CDS: 3.35 Total: -38.89 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: 0.30 Total: -61.25 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.05 Total: -27.24 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.67 Total: 45.14 kcal Total: -75.95 6.24 -69.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033426645.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.414 kcal (2) G-P(sol) polarization free energy of solvation -75.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds