Wall clock time and date at job start Mon Mar 30 2020 05:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46684 * 2 1 4 4 C 1.50694 * 109.47071 * 119.99776 * 2 1 3 5 5 H 1.08001 * 120.00159 * 120.00247 * 4 2 1 6 6 C 1.37875 * 120.00397 * 299.99879 * 4 2 1 7 7 N 1.31517 * 119.99977 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00462 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46895 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47407 * 120.00096 * 8 6 4 11 11 H 1.48508 * 109.47187 * 240.00346 * 8 6 4 12 12 O 1.42893 * 109.47037 * 239.99786 * 2 1 3 13 13 C 1.35906 * 116.99945 * 84.90915 * 12 2 1 14 14 C 1.38756 * 120.17316 * 354.62463 * 13 12 2 15 15 C 1.37833 * 119.71217 * 180.12054 * 14 13 12 16 16 C 1.38958 * 120.62293 * 359.97438 * 15 14 13 17 17 C 1.37715 * 119.77390 * 359.72404 * 16 15 14 18 18 C 1.38433 * 120.17147 * 174.60003 * 13 12 2 19 19 C 1.50627 * 122.55622 * 180.82039 * 17 16 15 20 20 C 1.52720 * 110.60986 * 342.01536 * 19 17 16 21 21 C 1.53328 * 108.40673 * 51.09362 * 20 19 17 22 22 C 1.50651 * 117.69335 * 179.42464 * 16 15 14 23 23 H 1.08996 * 109.47442 * 60.00067 * 1 2 3 24 24 H 1.09007 * 109.47276 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47375 * 300.00387 * 1 2 3 26 26 H 0.96998 * 120.00692 * 179.97438 * 7 6 4 27 27 H 1.07997 * 120.14454 * 0.13752 * 14 13 12 28 28 H 1.07999 * 119.68813 * 179.97438 * 15 14 13 29 29 H 1.08002 * 119.74590 * 0.06031 * 18 13 12 30 30 H 1.08993 * 109.25085 * 102.30771 * 19 17 16 31 31 H 1.09004 * 109.24956 * 221.72602 * 19 17 16 32 32 H 1.09005 * 109.68174 * 291.36946 * 20 19 17 33 33 H 1.09003 * 109.71378 * 170.84018 * 20 19 17 34 34 H 1.09001 * 109.68177 * 170.44881 * 21 20 19 35 35 H 1.09001 * 109.67689 * 49.90013 * 21 20 19 36 36 H 1.09000 * 109.25034 * 282.45469 * 22 16 15 37 37 H 1.08990 * 109.25562 * 41.89174 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6532 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1194 4.0079 9 1 3.1474 -2.2862 3.6038 10 1 3.1473 -0.1856 4.8161 11 1 1.1677 -1.5865 4.8165 12 8 2.0063 -0.6737 -1.1667 13 6 2.1106 0.0621 -2.3046 14 6 1.6586 1.3737 -2.3309 15 6 1.7668 2.1104 -3.4908 16 6 2.3250 1.5523 -4.6344 17 6 2.7800 0.2527 -4.6090 18 6 2.6689 -0.4929 -3.4433 19 6 3.4118 -0.4084 -5.8059 20 6 3.0714 0.3552 -7.0839 21 6 3.4024 1.8364 -6.8656 22 6 2.3987 2.4125 -5.8690 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.7081 1.1610 3.4844 27 1 1.2241 1.8155 -1.4464 28 1 1.4145 3.1311 -3.5110 29 1 3.0207 -1.5139 -3.4246 30 1 4.4938 -0.4278 -5.6763 31 1 3.0420 -1.4305 -5.8887 32 1 2.0098 0.2453 -7.3056 33 1 3.6618 -0.0343 -7.9133 34 1 3.3290 2.3723 -7.8119 35 1 4.4121 1.9318 -6.4664 36 1 1.4144 2.4570 -6.3353 37 1 2.7085 3.4189 -5.5879 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041228417.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:18 Heat of formation + Delta-G solvation = -42.056332 kcal Electronic energy + Delta-G solvation = -17526.879604 eV Core-core repulsion = 14847.083285 eV Total energy + Delta-G solvation = -2679.796319 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.86417 -37.95466 -35.00663 -33.28070 -32.19715 -29.75524 -29.30828 -27.84890 -25.34154 -23.38631 -22.66119 -21.79043 -20.90697 -18.83694 -16.96831 -16.59161 -15.53617 -15.20879 -14.83093 -14.31163 -14.12354 -13.90407 -13.75887 -13.06770 -12.95483 -12.68560 -12.32897 -12.09433 -11.85257 -11.55127 -11.22347 -10.97263 -10.96124 -10.88056 -10.69177 -10.42499 -10.32855 -10.25632 -9.97212 -9.73403 -8.95972 -8.53254 -8.27866 -7.28182 -6.21125 -4.26385 1.81787 2.00059 3.22729 3.29924 3.35804 4.16739 4.25198 4.52548 4.82308 4.88648 4.91257 5.12686 5.29200 5.31513 5.45616 5.61381 5.62142 5.66951 5.78935 5.85592 5.96952 5.99763 6.05688 6.19952 6.30145 6.32957 6.52646 6.57250 6.80683 6.83237 6.89274 7.02564 7.08664 7.26906 7.42877 7.64907 7.80310 8.11085 8.55694 8.88163 9.39668 10.86751 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.048920 B = 0.004757 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.230903 B = 5884.310187 C = 6170.712008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.207 3.793 3 H 0.034 0.966 4 C -0.515 4.515 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.910 3.090 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 O -0.315 6.315 13 C 0.157 3.843 14 C -0.210 4.210 15 C -0.082 4.082 16 C -0.140 4.140 17 C -0.042 4.042 18 C -0.177 4.177 19 C -0.078 4.078 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.069 4.069 23 H 0.017 0.983 24 H 0.038 0.962 25 H 0.097 0.903 26 H 0.265 0.735 27 H 0.134 0.866 28 H 0.115 0.885 29 H 0.121 0.879 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.581 2.144 -15.596 15.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.154 3.846 3 H 0.051 0.949 4 C -0.553 4.553 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.737 3.263 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 O -0.228 6.228 13 C 0.109 3.891 14 C -0.228 4.228 15 C -0.100 4.100 16 C -0.140 4.140 17 C -0.043 4.043 18 C -0.195 4.195 19 C -0.115 4.115 20 C -0.155 4.155 21 C -0.156 4.156 22 C -0.106 4.106 23 H 0.036 0.964 24 H 0.057 0.943 25 H 0.115 0.885 26 H 0.075 0.925 27 H 0.152 0.848 28 H 0.133 0.867 29 H 0.139 0.861 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.535 2.048 -15.384 15.725 hybrid contribution 0.053 -0.132 1.108 1.117 sum 2.588 1.916 -14.276 14.635 Atomic orbital electron populations 1.22317 0.98231 1.00526 1.01191 1.20278 0.91262 0.93429 0.79674 0.94877 1.21044 1.32002 1.13397 0.88857 0.91312 1.24871 0.94897 0.95114 0.99074 1.69885 1.36345 1.22772 1.24039 0.86234 0.78652 0.79573 0.81804 1.19461 1.20741 1.20724 1.86146 1.79844 1.39700 1.17153 1.19129 0.91981 0.90144 0.87853 1.21455 1.06596 0.94974 0.99823 1.20878 0.97990 0.99008 0.92146 1.19277 1.04792 0.94433 0.95527 1.19206 0.97880 0.93051 0.94115 1.20355 1.06693 1.00953 0.91545 1.20423 1.00238 0.98812 0.92008 1.21526 1.01609 0.95450 0.96928 1.21534 0.99526 0.95889 0.98671 1.20298 0.99232 0.97768 0.93301 0.96363 0.94295 0.88484 0.92515 0.84791 0.86726 0.86056 0.90860 0.90968 0.91743 0.91862 0.91984 0.91761 0.91585 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 8.95 37.16 0.33 -3.76 16 2 C 0.21 5.46 2.22 -27.89 -0.06 5.40 16 3 H 0.03 0.91 6.32 -51.93 -0.33 0.59 16 4 C -0.51 -14.55 8.89 -34.44 -0.31 -14.86 16 5 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.92 11.32 55.43 0.63 -24.29 16 8 Si 0.91 21.16 29.54 -169.99 -5.02 16.14 16 9 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 O -0.32 -7.84 9.79 -19.44 -0.19 -8.03 16 13 C 0.16 3.37 6.59 -39.32 -0.26 3.11 16 14 C -0.21 -4.19 8.24 -39.54 -0.33 -4.52 16 15 C -0.08 -1.38 9.60 -39.46 -0.38 -1.76 16 16 C -0.14 -2.15 5.74 -104.57 -0.60 -2.75 16 17 C -0.04 -0.67 5.74 -104.63 -0.60 -1.27 16 18 C -0.18 -3.26 9.55 -39.29 -0.38 -3.64 16 19 C -0.08 -0.94 5.67 -28.06 -0.16 -1.10 16 20 C -0.12 -1.19 5.98 -26.71 -0.16 -1.35 16 21 C -0.12 -1.20 5.98 -26.70 -0.16 -1.36 16 22 C -0.07 -0.81 5.67 -28.05 -0.16 -0.97 16 23 H 0.02 0.40 6.92 -51.93 -0.36 0.04 16 24 H 0.04 0.95 8.14 -51.92 -0.42 0.53 16 25 H 0.10 2.56 6.07 -51.93 -0.32 2.24 16 26 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 27 H 0.13 2.82 5.46 -52.49 -0.29 2.53 16 28 H 0.11 1.64 8.05 -52.49 -0.42 1.21 16 29 H 0.12 2.10 8.05 -52.49 -0.42 1.68 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 32 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 LS Contribution 296.23 15.07 4.46 4.46 Total: -1.00 -28.86 296.23 -8.90 -37.76 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -5.48 Total: 1.16 kcal Atomic # 6 Polarization: -23.90 SS G_CDS: -3.31 Total: -27.20 kcal Atomic # 7 Polarization: -24.92 SS G_CDS: 0.63 Total: -24.29 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: -0.19 Total: -8.03 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.86 -8.90 -37.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041228417.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.296 kcal (2) G-P(sol) polarization free energy of solvation -28.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds