Wall clock time and date at job start Mon Mar 30 2020 05:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46983 * 2 1 4 4 C 1.50695 * 109.47044 * 120.00038 * 2 1 3 5 5 H 1.08000 * 120.00368 * 119.99749 * 4 2 1 6 6 C 1.37878 * 120.00255 * 299.99867 * 4 2 1 7 7 N 1.31518 * 119.99506 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00362 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46968 * 60.00057 * 8 6 4 10 10 H 1.48503 * 109.47370 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47160 * 299.99919 * 8 6 4 12 12 O 1.42898 * 109.46663 * 239.99885 * 2 1 3 13 13 C 1.35899 * 117.00249 * 84.92141 * 12 2 1 14 14 C 1.38478 * 119.78502 * 354.53105 * 13 12 2 15 15 C 1.38133 * 119.71085 * 179.71177 * 14 13 12 16 16 C 1.38005 * 119.83076 * 0.73310 * 15 14 13 17 17 C 1.38917 * 120.65916 * 359.66916 * 16 15 14 18 18 C 1.37613 * 119.71933 * 359.75177 * 17 16 15 19 19 C 1.50619 * 122.57587 * 180.80341 * 18 17 16 20 20 C 1.52724 * 110.60287 * 342.00467 * 19 18 17 21 21 C 1.53320 * 108.40702 * 51.08352 * 20 19 18 22 22 C 1.50641 * 117.73210 * 179.42933 * 17 16 15 23 23 H 1.08997 * 109.47457 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47093 * 59.99957 * 1 2 3 25 25 H 1.09002 * 109.46927 * 300.00078 * 1 2 3 26 26 H 0.97002 * 119.99821 * 180.02562 * 7 6 4 27 27 H 1.07997 * 120.14750 * 0.02562 * 14 13 12 28 28 H 1.07998 * 120.08638 * 180.43764 * 15 14 13 29 29 H 1.07997 * 119.67352 * 179.69000 * 16 15 14 30 30 H 1.08999 * 109.25567 * 102.29624 * 19 18 17 31 31 H 1.09003 * 109.24648 * 221.71923 * 19 18 17 32 32 H 1.08997 * 109.67693 * 291.35616 * 20 19 18 33 33 H 1.09000 * 109.68060 * 170.81193 * 20 19 18 34 34 H 1.08999 * 109.68255 * 170.47932 * 21 20 19 35 35 H 1.09004 * 109.67990 * 49.93440 * 21 20 19 36 36 H 1.09004 * 109.25591 * 282.50024 * 22 17 16 37 37 H 1.08999 * 109.25442 * 41.93182 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8303 2.6033 8 14 2.3225 -1.1195 4.0079 9 1 3.8075 -1.1189 4.0077 10 1 1.8279 -0.4192 5.2205 11 1 1.8280 -2.5198 4.0082 12 8 2.0062 -0.6737 -1.1668 13 6 2.1108 0.0621 -2.3046 14 6 1.6556 1.3698 -2.3224 15 6 1.7681 2.1181 -3.4780 16 6 2.3189 1.5537 -4.6105 17 6 2.7692 0.2396 -4.5998 18 6 2.6702 -0.5061 -3.4475 19 6 3.1538 -1.9298 -3.3588 20 6 3.3232 -2.5277 -4.7538 21 6 4.1736 -1.5664 -5.5926 22 6 3.3468 -0.3139 -5.8762 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 0.7096 1.1619 3.4844 27 1 1.2192 1.8043 -1.4353 28 1 1.4215 3.1408 -3.4966 29 1 2.4010 2.1396 -5.5141 30 1 4.1118 -1.9523 -2.8393 31 1 2.4286 -2.5214 -2.7999 32 1 2.3461 -2.6551 -5.2197 33 1 3.8244 -3.4929 -4.6811 34 1 4.4496 -2.0448 -6.5323 35 1 5.0733 -1.2949 -5.0403 36 1 2.5350 -0.5661 -6.5585 37 1 3.9835 0.4400 -6.3392 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041228425.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:21 Heat of formation + Delta-G solvation = -40.838770 kcal Electronic energy + Delta-G solvation = -17874.504719 eV Core-core repulsion = 15194.761198 eV Total energy + Delta-G solvation = -2679.743522 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.92727 -37.59932 -35.33834 -33.40371 -31.46686 -30.09479 -29.15805 -27.83080 -25.30313 -23.40722 -22.63610 -21.89561 -20.36332 -18.93867 -17.03184 -16.44072 -15.48607 -15.24399 -14.78193 -14.44960 -14.14395 -13.72000 -13.63532 -13.10208 -12.85454 -12.48928 -12.26896 -11.98185 -11.57776 -11.47026 -11.19288 -11.04913 -10.96857 -10.79541 -10.69835 -10.43433 -10.28514 -10.20862 -9.85443 -9.77865 -8.98087 -8.51780 -8.12687 -7.30179 -6.20698 -4.26123 1.82731 2.03845 3.25778 3.29153 3.32348 4.16701 4.27149 4.54472 4.88736 5.01103 5.05791 5.13136 5.36770 5.44999 5.54445 5.63639 5.72861 5.77656 5.85149 5.97638 6.05113 6.18313 6.22034 6.25026 6.38927 6.50198 6.56787 6.67367 6.81363 6.86651 6.99342 7.00950 7.09128 7.27581 7.44589 7.64989 7.80158 8.11385 8.55425 8.87528 9.39725 10.87064 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.031598 B = 0.006029 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.932634 B = 4643.443198 C = 5264.610331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.208 3.792 3 H 0.033 0.967 4 C -0.516 4.516 5 H 0.067 0.933 6 C 0.063 3.937 7 N -0.892 5.892 8 Si 0.911 3.089 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.311 6.311 13 C 0.157 3.843 14 C -0.218 4.218 15 C -0.083 4.083 16 C -0.182 4.182 17 C -0.049 4.049 18 C -0.125 4.125 19 C -0.067 4.067 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.075 4.075 23 H 0.038 0.962 24 H 0.017 0.983 25 H 0.096 0.904 26 H 0.266 0.734 27 H 0.134 0.866 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.095 -1.250 -13.641 14.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.154 3.846 3 H 0.051 0.949 4 C -0.554 4.554 5 H 0.086 0.914 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.738 3.262 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.199 1.199 12 O -0.224 6.224 13 C 0.109 3.891 14 C -0.237 4.237 15 C -0.102 4.102 16 C -0.201 4.201 17 C -0.049 4.049 18 C -0.126 4.126 19 C -0.104 4.104 20 C -0.155 4.155 21 C -0.157 4.157 22 C -0.112 4.112 23 H 0.057 0.943 24 H 0.036 0.964 25 H 0.115 0.885 26 H 0.076 0.924 27 H 0.152 0.848 28 H 0.133 0.867 29 H 0.129 0.871 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.045 -1.339 -13.423 13.829 hybrid contribution 0.032 0.053 1.013 1.015 sum 3.077 -1.286 -12.411 12.851 Atomic orbital electron populations 1.22315 0.98271 1.00489 1.01180 1.20264 0.91215 0.93427 0.79644 0.94906 1.20955 1.32137 1.13418 0.88865 0.91431 1.24866 0.94893 0.95110 0.99047 1.69870 1.36265 1.22662 1.24238 0.86344 0.79246 0.79599 0.81037 1.19989 1.21046 1.19949 1.86125 1.79651 1.39620 1.17046 1.19219 0.92158 0.90075 0.87696 1.21432 1.07207 0.94924 1.00123 1.20776 0.97845 0.98912 0.92629 1.20804 1.05470 0.95330 0.98453 1.19257 0.98249 0.93481 0.93939 1.18882 1.05046 0.96992 0.91647 1.20181 1.01581 0.92126 0.96516 1.21549 0.99977 0.98048 0.95952 1.21544 0.98650 0.95749 0.99727 1.20409 0.98960 0.97269 0.94535 0.94325 0.96365 0.88520 0.92411 0.84800 0.86681 0.87079 0.91191 0.90521 0.91963 0.91856 0.91980 0.91672 0.91023 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.07 8.94 37.16 0.33 -3.73 16 2 C 0.21 5.43 2.22 -27.88 -0.06 5.37 16 3 H 0.03 0.91 6.30 -51.93 -0.33 0.58 16 4 C -0.52 -14.44 8.89 -34.44 -0.31 -14.75 16 5 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.87 11.32 55.43 0.63 -24.24 16 8 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 12 O -0.31 -7.57 8.81 -19.42 -0.17 -7.74 16 13 C 0.16 3.34 6.56 -39.08 -0.26 3.09 16 14 C -0.22 -4.39 8.22 -39.53 -0.32 -4.71 16 15 C -0.08 -1.41 10.04 -39.71 -0.40 -1.81 16 16 C -0.18 -2.83 9.60 -39.42 -0.38 -3.20 16 17 C -0.05 -0.78 5.74 -104.63 -0.60 -1.38 16 18 C -0.12 -2.29 5.75 -104.48 -0.60 -2.89 16 19 C -0.07 -1.10 5.28 -28.06 -0.15 -1.24 16 20 C -0.12 -1.49 5.98 -26.71 -0.16 -1.65 16 21 C -0.12 -1.36 5.98 -26.70 -0.16 -1.52 16 22 C -0.07 -0.91 5.67 -28.05 -0.16 -1.06 16 23 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.02 0.40 6.89 -51.93 -0.36 0.04 16 25 H 0.10 2.54 6.07 -51.93 -0.32 2.22 16 26 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.13 2.84 5.39 -52.49 -0.28 2.56 16 28 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 29 H 0.11 1.41 8.05 -52.49 -0.42 0.99 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.08 1.35 7.75 -51.93 -0.40 0.95 16 32 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.75 8.12 -51.93 -0.42 0.32 16 LS Contribution 294.83 15.07 4.44 4.44 Total: -1.00 -28.52 294.83 -8.89 -37.41 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -5.45 Total: 1.94 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: -3.32 Total: -27.88 kcal Atomic # 7 Polarization: -24.87 SS G_CDS: 0.63 Total: -24.24 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.17 Total: -7.74 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.52 -8.89 -37.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041228425.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.432 kcal (2) G-P(sol) polarization free energy of solvation -28.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds