Wall clock time and date at job start Mon Mar 30 2020 05:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00414 * 2 1 4 4 H 1.48503 * 109.46849 * 269.99899 * 3 2 1 5 5 H 1.48502 * 109.47195 * 29.99946 * 3 2 1 6 6 H 1.48497 * 109.46971 * 150.00060 * 3 2 1 7 7 C 1.37885 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00277 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99856 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47114 * 185.34441 * 9 7 2 11 11 C 1.46903 * 110.99972 * 191.60035 * 10 9 7 12 12 C 1.50698 * 109.46744 * 163.41760 * 11 10 9 13 13 C 1.38126 * 120.03664 * 108.98671 * 12 11 10 14 14 C 1.38259 * 120.07626 * 179.97438 * 13 12 11 15 15 C 1.38313 * 120.15012 * 359.97438 * 14 13 12 16 16 C 1.38081 * 120.07533 * 359.97438 * 15 14 13 17 17 C 1.38891 * 120.04378 * 289.21618 * 12 11 10 18 18 N 1.39681 * 120.06816 * 0.02562 * 17 12 11 19 19 C 1.46906 * 110.99849 * 67.64953 * 10 9 7 20 20 C 1.52992 * 117.49874 * 264.41849 * 19 10 9 21 21 C 1.53001 * 117.50064 * 195.75871 * 19 10 9 22 22 H 0.96997 * 119.99446 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47277 * 65.34680 * 9 7 2 24 24 H 1.08998 * 109.47142 * 305.34810 * 9 7 2 25 25 H 1.08994 * 109.46635 * 43.42012 * 11 10 9 26 26 H 1.08995 * 109.46954 * 283.42004 * 11 10 9 27 27 H 1.08007 * 119.96615 * 359.97438 * 13 12 11 28 28 H 1.08005 * 119.93052 * 179.97438 * 14 13 12 29 29 H 1.07998 * 119.95875 * 180.02562 * 15 14 13 30 30 H 1.07991 * 120.04015 * 179.97438 * 16 15 14 31 31 H 0.97003 * 119.99546 * 185.55121 * 18 17 12 32 32 H 0.96993 * 120.00089 * 5.55549 * 18 17 12 33 33 H 1.09010 * 115.54737 * 50.08867 * 19 10 9 34 34 H 1.08994 * 117.50248 * 0.02562 * 20 19 10 35 35 H 1.09003 * 117.49651 * 145.01617 * 20 19 10 36 36 H 1.08995 * 117.49371 * 214.98229 * 21 19 10 37 37 H 1.08998 * 117.49422 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1943 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2003 -3.6128 0.1278 11 6 1.5431 -4.8986 -0.1422 12 6 2.5887 -5.9518 -0.4040 13 6 2.8166 -6.9463 0.5272 14 6 3.7753 -7.9133 0.2876 15 6 4.5089 -7.8889 -0.8847 16 6 4.2854 -6.8982 -1.8203 17 6 3.3276 -5.9211 -1.5796 18 7 3.1034 -4.9138 -2.5210 19 6 2.8344 -3.6139 1.4530 20 6 4.1981 -2.9327 1.5840 21 6 4.0971 -4.4594 1.6313 22 1 -0.4849 0.8401 0.0004 23 1 0.6976 -2.5993 -0.9343 24 1 0.5547 -2.5168 0.8379 25 1 0.8991 -4.8009 -1.0161 26 1 0.9434 -5.1884 0.7205 27 1 2.2453 -6.9685 1.4435 28 1 3.9518 -8.6895 1.0175 29 1 5.2567 -8.6460 -1.0688 30 1 4.8588 -6.8795 -2.7352 31 1 3.5614 -4.9382 -3.3757 32 1 2.4899 -4.1900 -2.3200 33 1 2.1526 -3.5425 2.3005 34 1 4.6246 -2.4835 0.6872 35 1 4.4136 -2.4135 2.5179 36 1 4.2461 -4.9439 2.5962 37 1 4.4569 -5.0151 0.7655 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530966.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:09 Heat of formation + Delta-G solvation = 55.970560 kcal Electronic energy + Delta-G solvation = -18067.179006 eV Core-core repulsion = 15423.926203 eV Total energy + Delta-G solvation = -2643.252803 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.43203 -37.19634 -34.23630 -33.54505 -32.54818 -30.77113 -28.37323 -26.87093 -24.46059 -22.22606 -22.00849 -21.49536 -20.79353 -19.37330 -16.82509 -16.49066 -16.28932 -15.27321 -14.83591 -14.50850 -14.30984 -13.79830 -13.57050 -13.48418 -12.92215 -12.60558 -12.20000 -12.06349 -11.52119 -11.28915 -10.94364 -10.85523 -10.76387 -10.62437 -10.49946 -10.23562 -10.00123 -9.56704 -9.20028 -9.15654 -8.43726 -8.32516 -7.29832 -7.04133 -6.01665 -4.01843 1.77360 2.03092 3.31519 3.37996 3.42050 4.19167 4.40888 4.44709 4.64482 4.88631 5.22738 5.25670 5.33966 5.44926 5.68475 5.73156 5.78162 5.86410 5.95571 6.07675 6.20253 6.29751 6.30216 6.42196 6.45874 6.69854 6.74512 6.88520 6.93292 7.00212 7.19056 7.27911 7.38580 7.83729 7.97363 8.06920 8.21297 8.30062 8.55296 9.07434 9.62358 11.09136 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.032489 B = 0.006308 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.612904 B = 4437.464015 C = 4608.076481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.895 3.105 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.498 4.498 8 H 0.067 0.933 9 C 0.194 3.806 10 N -0.506 5.506 11 C 0.098 3.902 12 C -0.140 4.140 13 C -0.063 4.063 14 C -0.191 4.191 15 C -0.080 4.080 16 C -0.212 4.212 17 C 0.243 3.757 18 N -0.867 5.867 19 C 0.041 3.959 20 C -0.154 4.154 21 C -0.183 4.183 22 H 0.260 0.740 23 H 0.025 0.975 24 H -0.005 1.005 25 H 0.070 0.930 26 H 0.033 0.967 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.389 0.611 32 H 0.411 0.589 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.549 -12.739 -1.049 14.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.147 4.147 3 Si 0.723 3.277 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.537 4.537 8 H 0.085 0.915 9 C 0.069 3.931 10 N -0.231 5.231 11 C -0.030 4.030 12 C -0.145 4.145 13 C -0.082 4.082 14 C -0.211 4.211 15 C -0.099 4.099 16 C -0.236 4.236 17 C 0.135 3.865 18 N -0.405 5.405 19 C -0.068 4.068 20 C -0.191 4.191 21 C -0.221 4.221 22 H 0.069 0.931 23 H 0.043 0.957 24 H 0.013 0.987 25 H 0.088 0.912 26 H 0.051 0.949 27 H 0.130 0.870 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.216 0.784 32 H 0.243 0.757 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.726 -12.523 -1.384 14.282 hybrid contribution -0.293 1.208 0.399 1.305 sum 6.433 -11.316 -0.985 13.054 Atomic orbital electron populations 1.69960 1.06025 1.26631 1.51537 1.24982 0.94802 0.99208 0.95705 0.86543 0.79795 0.83339 0.78004 1.20799 1.21447 1.19868 1.21186 0.93742 0.89557 1.49186 0.91521 1.19761 0.89850 0.87514 0.95992 1.61964 1.33525 1.01675 1.25931 1.20803 0.93095 0.89273 0.99839 1.19381 1.01516 0.98768 0.94839 1.20738 0.96648 0.93412 0.97397 1.20710 1.00469 1.01281 0.98645 1.20713 0.98251 0.97207 0.93698 1.20493 1.02627 0.98683 1.01753 1.17570 0.91956 0.87902 0.89039 1.42650 1.52463 1.27948 1.17408 1.21955 0.89543 1.03937 0.91388 1.22809 1.00532 0.93715 1.02092 1.23123 1.03041 0.94140 1.01766 0.93056 0.95685 0.98688 0.91179 0.94915 0.86964 0.87242 0.87101 0.87023 0.78391 0.75728 0.91177 0.88668 0.90126 0.90360 0.88432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 2 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.50 -13.52 8.61 -34.44 -0.30 -13.81 16 8 H 0.07 1.81 6.23 -52.49 -0.33 1.48 16 9 C 0.19 4.84 4.72 -4.98 -0.02 4.81 16 10 N -0.51 -10.39 4.02 -229.52 -0.92 -11.31 16 11 C 0.10 1.75 4.30 -4.98 -0.02 1.73 16 12 C -0.14 -2.24 3.39 -104.42 -0.35 -2.60 16 13 C -0.06 -0.91 7.91 -39.61 -0.31 -1.22 16 14 C -0.19 -2.51 10.04 -39.55 -0.40 -2.91 16 15 C -0.08 -1.02 10.04 -39.61 -0.40 -1.42 16 16 C -0.21 -2.92 9.90 -39.38 -0.39 -3.31 16 17 C 0.24 3.74 6.55 -83.78 -0.55 3.19 16 18 N -0.87 -12.70 9.00 32.41 0.29 -12.41 16 19 C 0.04 0.81 4.48 -67.71 -0.30 0.51 16 20 C -0.15 -2.91 9.43 -26.70 -0.25 -3.16 16 21 C -0.18 -3.11 8.46 -26.69 -0.23 -3.34 16 22 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 23 H 0.03 0.66 7.82 -51.93 -0.41 0.25 16 24 H 0.00 -0.13 8.11 -51.93 -0.42 -0.55 16 25 H 0.07 1.26 7.32 -51.93 -0.38 0.88 16 26 H 0.03 0.58 7.82 -51.93 -0.41 0.18 16 27 H 0.11 1.53 7.98 -52.48 -0.42 1.11 16 28 H 0.11 1.22 8.06 -52.48 -0.42 0.79 16 29 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.39 4.68 8.85 -40.82 -0.36 4.31 16 32 H 0.41 6.81 6.94 -40.82 -0.28 6.53 16 33 H 0.07 1.45 8.14 -51.92 -0.42 1.02 16 34 H 0.09 1.94 7.45 -51.93 -0.39 1.55 16 35 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.10 1.74 6.06 -51.93 -0.31 1.42 16 LS Contribution 301.92 15.07 4.55 4.55 Total: -1.00 -28.75 301.92 -9.36 -38.11 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -5.38 Total: 10.35 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -3.62 Total: -20.13 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.11 Total: -49.40 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.75 -9.36 -38.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530966.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.081 kcal (2) G-P(sol) polarization free energy of solvation -28.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds