Wall clock time and date at job start Mon Mar 30 2020 05:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00414 * 2 1 4 4 H 1.48503 * 109.46849 * 269.99899 * 3 2 1 5 5 H 1.48502 * 109.47195 * 29.99946 * 3 2 1 6 6 H 1.48497 * 109.46971 * 150.00060 * 3 2 1 7 7 C 1.37885 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00277 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99856 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47114 * 185.34441 * 9 7 2 11 11 C 1.46903 * 110.99972 * 191.60035 * 10 9 7 12 12 C 1.50698 * 109.46744 * 163.41760 * 11 10 9 13 13 C 1.38126 * 120.03664 * 108.98671 * 12 11 10 14 14 C 1.38259 * 120.07626 * 179.97438 * 13 12 11 15 15 C 1.38313 * 120.15012 * 359.97438 * 14 13 12 16 16 C 1.38081 * 120.07533 * 359.97438 * 15 14 13 17 17 C 1.38891 * 120.04378 * 289.21618 * 12 11 10 18 18 N 1.39681 * 120.06816 * 0.02562 * 17 12 11 19 19 C 1.46906 * 110.99849 * 67.64953 * 10 9 7 20 20 C 1.52992 * 117.49874 * 264.41849 * 19 10 9 21 21 C 1.53001 * 117.50064 * 195.75871 * 19 10 9 22 22 H 0.96997 * 119.99446 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47277 * 65.34680 * 9 7 2 24 24 H 1.08998 * 109.47142 * 305.34810 * 9 7 2 25 25 H 1.08994 * 109.46635 * 43.42012 * 11 10 9 26 26 H 1.08995 * 109.46954 * 283.42004 * 11 10 9 27 27 H 1.08007 * 119.96615 * 359.97438 * 13 12 11 28 28 H 1.08005 * 119.93052 * 179.97438 * 14 13 12 29 29 H 1.07998 * 119.95875 * 180.02562 * 15 14 13 30 30 H 1.07991 * 120.04015 * 179.97438 * 16 15 14 31 31 H 0.97003 * 119.99546 * 185.55121 * 18 17 12 32 32 H 0.96993 * 120.00089 * 5.55549 * 18 17 12 33 33 H 1.09010 * 115.54737 * 50.08867 * 19 10 9 34 34 H 1.08994 * 117.50248 * 0.02562 * 20 19 10 35 35 H 1.09003 * 117.49651 * 145.01617 * 20 19 10 36 36 H 1.08995 * 117.49371 * 214.98229 * 21 19 10 37 37 H 1.08998 * 117.49422 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1943 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2003 -3.6128 0.1278 11 6 1.5431 -4.8986 -0.1422 12 6 2.5887 -5.9518 -0.4040 13 6 2.8166 -6.9463 0.5272 14 6 3.7753 -7.9133 0.2876 15 6 4.5089 -7.8889 -0.8847 16 6 4.2854 -6.8982 -1.8203 17 6 3.3276 -5.9211 -1.5796 18 7 3.1034 -4.9138 -2.5210 19 6 2.8344 -3.6139 1.4530 20 6 4.1981 -2.9327 1.5840 21 6 4.0971 -4.4594 1.6313 22 1 -0.4849 0.8401 0.0004 23 1 0.6976 -2.5993 -0.9343 24 1 0.5547 -2.5168 0.8379 25 1 0.8991 -4.8009 -1.0161 26 1 0.9434 -5.1884 0.7205 27 1 2.2453 -6.9685 1.4435 28 1 3.9518 -8.6895 1.0175 29 1 5.2567 -8.6460 -1.0688 30 1 4.8588 -6.8795 -2.7352 31 1 3.5614 -4.9382 -3.3757 32 1 2.4899 -4.1900 -2.3200 33 1 2.1526 -3.5425 2.3005 34 1 4.6246 -2.4835 0.6872 35 1 4.4136 -2.4135 2.5179 36 1 4.2461 -4.9439 2.5962 37 1 4.4569 -5.0151 0.7655 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042530966.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:09 Heat of formation + Delta-G solvation = 38.622560 kcal Electronic energy + Delta-G solvation = -18067.931271 eV Core-core repulsion = 15423.926203 eV Total energy + Delta-G solvation = -2644.005069 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.65227 -38.67175 -35.60709 -35.06944 -34.33828 -32.17915 -29.60290 -28.60791 -25.98093 -24.13472 -23.21777 -22.86797 -22.05021 -20.92348 -18.56166 -17.74332 -17.61318 -16.90236 -16.37150 -16.03273 -15.81574 -15.48091 -14.73384 -14.61751 -14.42360 -13.99430 -13.81090 -13.57353 -13.22704 -12.89956 -12.77275 -12.56743 -12.26226 -12.07352 -11.87253 -11.69257 -11.32166 -11.26093 -11.08170 -10.69698 -10.56039 -9.47682 -9.00850 -8.20495 -8.13521 -6.23811 0.67241 0.94864 1.41063 1.41409 1.52682 2.41775 3.01703 3.12661 3.18105 3.28933 3.38203 4.06923 4.10506 4.20863 4.30397 4.39379 4.47444 4.60372 4.70223 4.80538 4.83532 4.90702 4.95707 5.12207 5.14102 5.19800 5.31640 5.36803 5.46347 5.62119 5.73535 5.81277 5.91319 6.09151 6.22742 6.42210 6.65566 6.82242 6.93718 7.16104 7.45279 8.94660 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.032489 B = 0.006308 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.612904 B = 4437.464015 C = 4608.076481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.001 3.999 3 Si 0.962 3.038 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.504 4.504 8 H 0.066 0.934 9 C 0.209 3.791 10 N -0.499 5.499 11 C 0.102 3.898 12 C -0.159 4.159 13 C -0.068 4.068 14 C -0.189 4.189 15 C -0.075 4.075 16 C -0.215 4.215 17 C 0.226 3.774 18 N -0.869 5.869 19 C 0.015 3.985 20 C -0.161 4.161 21 C -0.142 4.142 22 H 0.261 0.739 23 H 0.005 0.995 24 H -0.040 1.040 25 H 0.060 0.940 26 H 0.028 0.972 27 H 0.117 0.883 28 H 0.135 0.865 29 H 0.142 0.858 30 H 0.130 0.870 31 H 0.400 0.600 32 H 0.400 0.600 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.884 -14.059 -0.812 16.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.543 4.543 8 H 0.085 0.915 9 C 0.083 3.917 10 N -0.223 5.223 11 C -0.025 4.025 12 C -0.165 4.165 13 C -0.087 4.087 14 C -0.209 4.209 15 C -0.094 4.094 16 C -0.238 4.238 17 C 0.119 3.881 18 N -0.407 5.407 19 C -0.095 4.095 20 C -0.199 4.199 21 C -0.179 4.179 22 H 0.070 0.930 23 H 0.023 0.977 24 H -0.022 1.022 25 H 0.078 0.922 26 H 0.047 0.953 27 H 0.135 0.865 28 H 0.153 0.847 29 H 0.160 0.840 30 H 0.148 0.852 31 H 0.229 0.771 32 H 0.229 0.771 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.123 0.877 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.090 -13.877 -1.159 16.629 hybrid contribution -1.013 1.503 0.322 1.841 sum 8.077 -12.373 -0.837 14.800 Atomic orbital electron populations 1.70090 1.07624 1.27528 1.52669 1.25830 0.95587 1.02837 0.95373 0.85491 0.78609 0.78905 0.78270 1.20026 1.21223 1.19027 1.21449 0.93784 0.90526 1.48525 0.91539 1.19408 0.89749 0.89067 0.93449 1.61897 1.32171 1.01577 1.26653 1.20761 0.93876 0.88770 0.99126 1.19217 1.02008 0.99046 0.96204 1.20868 0.97177 0.93407 0.97258 1.21018 0.99448 1.01096 0.99303 1.21116 0.98206 0.97135 0.92937 1.20774 1.02056 0.98218 1.02778 1.17805 0.92678 0.88625 0.89029 1.42640 1.52434 1.27583 1.18057 1.22000 0.90112 1.06952 0.90399 1.22826 0.99623 0.95466 1.01952 1.23064 0.99180 0.92772 1.02886 0.92997 0.97674 1.02225 0.92200 0.95347 0.86484 0.84716 0.84041 0.85217 0.77116 0.77118 0.92510 0.90342 0.88899 0.87678 0.88664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.40 13.29 21.45 0.28 -56.12 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.96 44.48 29.54 68.60 2.03 46.50 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.50 -28.03 8.61 25.60 0.22 -27.81 16 8 H 0.07 3.64 6.23 -2.92 -0.02 3.62 16 9 C 0.21 10.97 4.72 85.56 0.40 11.38 16 10 N -0.50 -21.09 4.02 -880.07 -3.54 -24.62 16 11 C 0.10 3.78 4.30 85.56 0.37 4.15 16 12 C -0.16 -5.01 3.39 -19.74 -0.07 -5.07 16 13 C -0.07 -1.84 7.91 22.25 0.18 -1.66 16 14 C -0.19 -4.28 10.04 22.29 0.22 -4.06 16 15 C -0.08 -1.64 10.04 22.25 0.22 -1.41 16 16 C -0.22 -5.33 9.90 22.40 0.22 -5.11 16 17 C 0.23 6.70 6.55 38.21 0.25 6.95 16 18 N -0.87 -25.37 9.00 -51.37 -0.46 -25.84 16 19 C 0.01 0.58 4.48 44.91 0.20 0.78 16 20 C -0.16 -5.94 9.43 30.61 0.29 -5.66 16 21 C -0.14 -4.53 8.46 30.62 0.26 -4.28 16 22 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 23 H 0.01 0.29 7.82 -2.39 -0.02 0.27 16 24 H -0.04 -2.34 8.11 -2.39 -0.02 -2.36 16 25 H 0.06 2.28 7.32 -2.39 -0.02 2.26 16 26 H 0.03 1.05 7.82 -2.39 -0.02 1.03 16 27 H 0.12 2.98 7.98 -2.91 -0.02 2.96 16 28 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 29 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 30 H 0.13 2.68 8.06 -2.92 -0.02 2.66 16 31 H 0.40 9.40 8.85 -92.71 -0.82 8.58 16 32 H 0.40 13.64 6.94 -92.71 -0.64 12.99 16 33 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 34 H 0.08 3.16 7.45 -2.39 -0.02 3.15 16 35 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 36 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 37 H 0.09 3.16 6.06 -2.39 -0.01 3.15 16 Total: -1.00 -62.34 301.92 1.15 -61.19 By element: Atomic # 1 Polarization: 30.57 SS G_CDS: -0.39 Total: 30.18 kcal Atomic # 6 Polarization: -34.52 SS G_CDS: 3.23 Total: -31.29 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -3.71 Total: -106.58 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -62.34 1.15 -61.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530966.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.811 kcal (2) G-P(sol) polarization free energy of solvation -62.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds