Wall clock time and date at job start Mon Mar 30 2020 06:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00073 * 2 1 4 4 H 1.48500 * 109.47098 * 269.99219 * 3 2 1 5 5 H 1.48500 * 109.46951 * 29.99516 * 3 2 1 6 6 H 1.48505 * 109.47016 * 149.99248 * 3 2 1 7 7 C 1.37880 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00269 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99840 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.46998 * 184.84630 * 9 7 2 11 11 C 1.46905 * 111.00011 * 285.62881 * 10 9 7 12 12 C 1.53000 * 109.46908 * 170.00047 * 11 10 9 13 13 C 1.50698 * 109.46988 * 179.97438 * 12 11 10 14 14 C 1.38654 * 120.79173 * 269.71584 * 13 12 11 15 15 C 1.38200 * 119.16134 * 179.79575 * 14 13 12 16 16 N 1.31872 * 120.76628 * 0.49738 * 15 14 13 17 17 C 1.31878 * 121.72479 * 359.73110 * 16 15 14 18 18 C 1.38199 * 120.76160 * 0.02872 * 17 16 15 19 19 C 1.46895 * 110.99953 * 161.67235 * 10 9 7 20 20 C 1.52993 * 117.49936 * 10.39875 * 19 10 9 21 21 C 1.52998 * 60.00265 * 252.51000 * 20 19 10 22 22 H 0.97002 * 120.00055 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.46644 * 64.85240 * 9 7 2 24 24 H 1.08994 * 109.47240 * 304.85065 * 9 7 2 25 25 H 1.08993 * 109.47430 * 50.00138 * 11 10 9 26 26 H 1.09000 * 109.47118 * 289.99760 * 11 10 9 27 27 H 1.09000 * 109.46997 * 299.99787 * 12 11 10 28 28 H 1.09003 * 109.47024 * 59.99840 * 12 11 10 29 29 H 1.07999 * 120.41409 * 0.02562 * 14 13 12 30 30 H 1.07998 * 119.61717 * 180.20657 * 15 14 13 31 31 H 1.08001 * 119.61677 * 180.02562 * 17 16 15 32 32 H 1.07995 * 120.41658 * 179.97438 * 18 17 16 33 33 H 1.09005 * 115.55217 * 156.10546 * 19 10 9 34 34 H 1.09005 * 117.50102 * 0.02562 * 20 19 10 35 35 H 1.09003 * 117.50112 * 145.02032 * 20 19 10 36 36 H 1.09001 * 117.49861 * 252.51383 * 21 20 19 37 37 H 1.08998 * 117.52158 * 107.47980 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2011 -3.6133 0.1182 11 6 2.9193 -3.8283 -1.1452 12 6 4.0644 -4.8174 -0.9189 13 6 4.8007 -5.0385 -2.2150 14 6 4.4214 -6.0509 -3.0831 15 6 5.1176 -6.2209 -4.2647 16 7 6.1372 -5.4404 -4.5652 17 6 6.5287 -4.4708 -3.7616 18 6 5.8774 -4.2380 -2.5652 19 6 1.5218 -4.8409 0.5531 20 6 -0.0081 -4.8351 0.5657 21 6 0.7678 -4.7975 1.8838 22 1 -0.4850 0.8401 -0.0004 23 1 0.6914 -2.5956 -0.9300 24 1 0.5604 -2.5200 0.8436 25 1 3.3230 -2.8800 -1.4997 26 1 2.2326 -4.2317 -1.8894 27 1 4.7512 -4.4140 -0.1747 28 1 3.6606 -5.7658 -0.5644 29 1 3.5899 -6.6961 -2.8406 30 1 4.8263 -7.0051 -4.9478 31 1 7.3680 -3.8515 -4.0418 32 1 6.2029 -3.4427 -1.9111 33 1 2.0197 -5.7733 0.2870 34 1 -0.5106 -3.9205 0.2508 35 1 -0.5171 -5.7638 0.3076 36 1 0.7694 -5.7015 2.4928 37 1 0.7763 -3.8582 2.4366 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042549341.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:42 Heat of formation + Delta-G solvation = 61.398979 kcal Electronic energy + Delta-G solvation = -17331.619751 eV Core-core repulsion = 14688.602342 eV Total energy + Delta-G solvation = -2643.017409 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.09073 -38.22123 -34.79333 -33.24828 -32.00817 -31.13733 -28.95989 -26.40966 -23.52246 -23.39209 -22.68156 -21.71989 -21.23941 -18.83890 -16.80795 -16.50840 -16.28087 -15.56445 -15.32622 -14.88682 -14.34967 -13.91376 -13.72554 -13.40760 -13.16314 -12.59459 -12.20494 -12.10829 -11.73200 -11.46694 -11.14081 -10.93592 -10.83228 -10.71965 -10.53234 -10.10026 -9.88409 -9.74805 -9.43845 -9.26649 -9.16146 -9.10173 -8.45333 -7.18093 -6.05987 -4.07430 1.19003 1.33029 3.29511 3.36011 3.39854 3.86717 4.30718 4.42734 4.49220 4.68945 4.81928 5.03648 5.17868 5.21920 5.29892 5.37876 5.49196 5.54135 5.61070 5.65155 5.77098 5.84672 6.01110 6.06964 6.15195 6.22375 6.26641 6.54432 6.59028 6.63621 6.76042 6.77842 7.21624 7.26504 7.76661 8.00579 8.05738 8.13856 8.48509 8.99548 9.56736 11.04622 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017154 B = 0.006475 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.880093 B = 4323.598084 C = 5605.956633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.189 3.811 10 N -0.504 5.504 11 C 0.074 3.926 12 C -0.083 4.083 13 C -0.025 4.025 14 C -0.173 4.173 15 C 0.094 3.906 16 N -0.496 5.496 17 C 0.096 3.904 18 C -0.167 4.167 19 C 0.022 3.978 20 C -0.226 4.226 21 C -0.174 4.174 22 H 0.261 0.739 23 H -0.009 1.009 24 H 0.041 0.959 25 H 0.084 0.916 26 H 0.024 0.976 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.131 0.869 30 H 0.151 0.849 31 H 0.153 0.847 32 H 0.137 0.863 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.275 -11.486 -3.234 13.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.065 3.935 10 N -0.226 5.226 11 C -0.054 4.054 12 C -0.121 4.121 13 C -0.034 4.034 14 C -0.193 4.193 15 C -0.062 4.062 16 N -0.206 5.206 17 C -0.061 4.061 18 C -0.187 4.187 19 C -0.088 4.088 20 C -0.265 4.265 21 C -0.212 4.212 22 H 0.071 0.929 23 H 0.009 0.991 24 H 0.059 0.941 25 H 0.103 0.897 26 H 0.042 0.958 27 H 0.103 0.897 28 H 0.090 0.910 29 H 0.149 0.851 30 H 0.169 0.831 31 H 0.170 0.830 32 H 0.155 0.845 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.927 -11.341 -3.661 14.313 hybrid contribution -0.804 0.875 0.228 1.210 sum 7.122 -10.466 -3.433 13.117 Atomic orbital electron populations 1.69949 1.06045 1.26828 1.50978 1.24974 0.94861 0.99281 0.95420 0.86517 0.79852 0.83136 0.78052 1.20742 1.21226 1.19743 1.21155 0.93504 0.89895 1.50041 0.91949 1.19860 0.90484 0.86996 0.96180 1.62010 1.28954 1.03163 1.28442 1.21882 0.93730 0.98785 0.91041 1.20785 0.97878 1.00565 0.92832 1.20458 0.93766 0.92962 0.96217 1.22064 1.01658 0.99707 0.95842 1.22682 0.91396 0.97204 0.94932 1.67645 1.14433 1.05326 1.33192 1.22726 0.98511 0.94332 0.90482 1.22145 0.97006 1.00826 0.98741 1.22671 0.90603 0.94840 1.00698 1.23576 0.96900 1.03168 1.02868 1.22979 1.04592 1.02716 0.90947 0.92890 0.99078 0.94102 0.89731 0.95796 0.89717 0.91042 0.85068 0.83121 0.82970 0.84543 0.87776 0.87515 0.90139 0.89631 0.88332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.51 -13.98 8.58 -34.44 -0.30 -14.28 16 8 H 0.06 1.70 7.57 -52.49 -0.40 1.30 16 9 C 0.19 4.78 3.38 -4.97 -0.02 4.76 16 10 N -0.50 -10.44 4.65 -228.09 -1.06 -11.50 16 11 C 0.07 1.35 4.77 -3.82 -0.02 1.33 16 12 C -0.08 -1.19 5.39 -27.88 -0.15 -1.34 16 13 C -0.03 -0.34 5.17 -104.32 -0.54 -0.88 16 14 C -0.17 -2.11 9.82 -39.44 -0.39 -2.50 16 15 C 0.09 1.15 11.18 -17.55 -0.20 0.95 16 16 N -0.50 -6.79 10.36 -13.25 -0.14 -6.93 16 17 C 0.10 1.20 11.18 -17.55 -0.20 1.01 16 18 C -0.17 -2.16 9.82 -39.44 -0.39 -2.54 16 19 C 0.02 0.39 5.83 -67.72 -0.39 -0.01 16 20 C -0.23 -3.96 9.56 -26.74 -0.26 -4.21 16 21 C -0.17 -2.96 9.91 -26.73 -0.26 -3.22 16 22 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 23 H -0.01 -0.23 7.82 -51.93 -0.41 -0.64 16 24 H 0.04 1.10 5.63 -51.93 -0.29 0.81 16 25 H 0.08 1.72 7.21 -51.93 -0.37 1.34 16 26 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 27 H 0.08 1.23 8.10 -51.93 -0.42 0.81 16 28 H 0.07 0.93 6.36 -51.93 -0.33 0.60 16 29 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 30 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.15 1.50 8.06 -52.49 -0.42 1.07 16 32 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.10 1.57 6.34 -51.93 -0.33 1.24 16 34 H 0.11 2.19 6.02 -51.93 -0.31 1.88 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.10 1.89 7.48 -51.93 -0.39 1.50 16 LS Contribution 306.68 15.07 4.62 4.62 Total: -1.00 -30.21 306.68 -9.41 -39.61 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -5.35 Total: 2.86 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -3.20 Total: -19.46 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: -0.46 Total: -44.05 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.21 -9.41 -39.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549341.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.009 kcal (2) G-P(sol) polarization free energy of solvation -30.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds