Wall clock time and date at job start Mon Mar 30 2020 06:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00073 * 2 1 4 4 H 1.48500 * 109.47098 * 269.99219 * 3 2 1 5 5 H 1.48500 * 109.46951 * 29.99516 * 3 2 1 6 6 H 1.48505 * 109.47016 * 149.99248 * 3 2 1 7 7 C 1.37880 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00269 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99840 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.46998 * 184.84630 * 9 7 2 11 11 C 1.46905 * 111.00011 * 285.62881 * 10 9 7 12 12 C 1.53000 * 109.46908 * 170.00047 * 11 10 9 13 13 C 1.50698 * 109.46988 * 179.97438 * 12 11 10 14 14 C 1.38654 * 120.79173 * 269.71584 * 13 12 11 15 15 C 1.38200 * 119.16134 * 179.79575 * 14 13 12 16 16 N 1.31872 * 120.76628 * 0.49738 * 15 14 13 17 17 C 1.31878 * 121.72479 * 359.73110 * 16 15 14 18 18 C 1.38199 * 120.76160 * 0.02872 * 17 16 15 19 19 C 1.46895 * 110.99953 * 161.67235 * 10 9 7 20 20 C 1.52993 * 117.49936 * 10.39875 * 19 10 9 21 21 C 1.52998 * 60.00265 * 252.51000 * 20 19 10 22 22 H 0.97002 * 120.00055 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.46644 * 64.85240 * 9 7 2 24 24 H 1.08994 * 109.47240 * 304.85065 * 9 7 2 25 25 H 1.08993 * 109.47430 * 50.00138 * 11 10 9 26 26 H 1.09000 * 109.47118 * 289.99760 * 11 10 9 27 27 H 1.09000 * 109.46997 * 299.99787 * 12 11 10 28 28 H 1.09003 * 109.47024 * 59.99840 * 12 11 10 29 29 H 1.07999 * 120.41409 * 0.02562 * 14 13 12 30 30 H 1.07998 * 119.61717 * 180.20657 * 15 14 13 31 31 H 1.08001 * 119.61677 * 180.02562 * 17 16 15 32 32 H 1.07995 * 120.41658 * 179.97438 * 18 17 16 33 33 H 1.09005 * 115.55217 * 156.10546 * 19 10 9 34 34 H 1.09005 * 117.50102 * 0.02562 * 20 19 10 35 35 H 1.09003 * 117.50112 * 145.02032 * 20 19 10 36 36 H 1.09001 * 117.49861 * 252.51383 * 21 20 19 37 37 H 1.08998 * 117.52158 * 107.47980 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2011 -3.6133 0.1182 11 6 2.9193 -3.8283 -1.1452 12 6 4.0644 -4.8174 -0.9189 13 6 4.8007 -5.0385 -2.2150 14 6 4.4214 -6.0509 -3.0831 15 6 5.1176 -6.2209 -4.2647 16 7 6.1372 -5.4404 -4.5652 17 6 6.5287 -4.4708 -3.7616 18 6 5.8774 -4.2380 -2.5652 19 6 1.5218 -4.8409 0.5531 20 6 -0.0081 -4.8351 0.5657 21 6 0.7678 -4.7975 1.8838 22 1 -0.4850 0.8401 -0.0004 23 1 0.6914 -2.5956 -0.9300 24 1 0.5604 -2.5200 0.8436 25 1 3.3230 -2.8800 -1.4997 26 1 2.2326 -4.2317 -1.8894 27 1 4.7512 -4.4140 -0.1747 28 1 3.6606 -5.7658 -0.5644 29 1 3.5899 -6.6961 -2.8406 30 1 4.8263 -7.0051 -4.9478 31 1 7.3680 -3.8515 -4.0418 32 1 6.2029 -3.4427 -1.9111 33 1 2.0197 -5.7733 0.2870 34 1 -0.5106 -3.9205 0.2508 35 1 -0.5171 -5.7638 0.3076 36 1 0.7694 -5.7015 2.4928 37 1 0.7763 -3.8582 2.4366 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042549341.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:41 Heat of formation + Delta-G solvation = 43.069556 kcal Electronic energy + Delta-G solvation = -17332.414574 eV Core-core repulsion = 14688.602342 eV Total energy + Delta-G solvation = -2643.812232 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.07341 -39.74130 -36.03440 -35.13451 -33.61587 -32.06711 -30.47367 -28.20100 -25.02298 -24.41330 -24.28876 -23.13385 -22.40349 -20.41015 -18.74652 -17.59969 -17.30405 -17.01540 -16.67115 -16.41827 -16.02789 -15.14457 -14.93263 -14.54759 -14.51137 -14.19528 -13.79906 -13.67887 -13.05723 -12.95455 -12.72759 -12.57987 -12.46314 -12.31385 -12.06802 -11.89668 -11.51148 -11.13183 -11.10541 -10.63035 -10.41258 -10.37353 -10.03319 -8.85539 -8.21475 -6.31590 0.25826 0.32668 1.39063 1.40080 1.51620 2.38145 2.84271 2.94993 3.10542 3.32969 3.63774 3.83934 3.86639 4.04106 4.09842 4.20696 4.24906 4.28350 4.31748 4.44143 4.66747 4.73014 4.80865 4.81955 4.91509 5.01617 5.06806 5.12232 5.15602 5.28222 5.29893 5.34076 5.53597 5.63981 5.84229 6.06092 6.35302 6.63046 6.84300 7.06267 7.37858 8.88867 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017154 B = 0.006475 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.880093 B = 4323.598084 C = 5605.956633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.524 4.524 8 H 0.061 0.939 9 C 0.210 3.790 10 N -0.514 5.514 11 C 0.079 3.921 12 C -0.065 4.065 13 C -0.041 4.041 14 C -0.173 4.173 15 C 0.089 3.911 16 N -0.517 5.517 17 C 0.089 3.911 18 C -0.177 4.177 19 C 0.015 3.985 20 C -0.228 4.228 21 C -0.167 4.167 22 H 0.264 0.736 23 H -0.042 1.042 24 H 0.016 0.984 25 H 0.055 0.945 26 H 0.019 0.981 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.153 0.847 30 H 0.179 0.821 31 H 0.174 0.826 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.065 0.935 35 H 0.114 0.886 36 H 0.126 0.874 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.532 -12.881 -3.306 15.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.195 4.195 3 Si 0.790 3.210 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.562 4.562 8 H 0.079 0.921 9 C 0.084 3.916 10 N -0.235 5.235 11 C -0.049 4.049 12 C -0.103 4.103 13 C -0.050 4.050 14 C -0.192 4.192 15 C -0.068 4.068 16 N -0.227 5.227 17 C -0.067 4.067 18 C -0.197 4.197 19 C -0.094 4.094 20 C -0.267 4.267 21 C -0.205 4.205 22 H 0.073 0.927 23 H -0.024 1.024 24 H 0.034 0.966 25 H 0.074 0.926 26 H 0.038 0.962 27 H 0.100 0.900 28 H 0.110 0.890 29 H 0.170 0.830 30 H 0.196 0.804 31 H 0.191 0.809 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.084 0.916 35 H 0.132 0.868 36 H 0.144 0.856 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.199 -12.753 -3.732 16.162 hybrid contribution -1.221 1.261 0.223 1.770 sum 7.978 -11.492 -3.509 14.423 Atomic orbital electron populations 1.70080 1.07677 1.27835 1.51887 1.25877 0.95709 1.03075 0.94888 0.85441 0.78718 0.78478 0.78373 1.19960 1.20737 1.18766 1.21505 0.93619 0.91258 1.49817 0.92078 1.19415 0.90379 0.88462 0.93341 1.61903 1.28162 1.03689 1.29788 1.21817 0.94636 0.98639 0.89785 1.20569 0.96187 1.00006 0.93510 1.20476 0.94302 0.94015 0.96220 1.22310 1.02001 0.99442 0.95474 1.23170 0.90790 0.97432 0.95373 1.67696 1.15262 1.05962 1.33788 1.23093 0.99047 0.94385 0.90204 1.22316 0.97182 1.01024 0.99165 1.22947 0.90705 0.94640 1.01124 1.23493 0.96810 1.02810 1.03574 1.23023 1.03686 1.02991 0.90760 0.92736 1.02391 0.96597 0.92595 0.96224 0.89960 0.89029 0.82975 0.80431 0.80850 0.83959 0.83988 0.91647 0.86788 0.85632 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.49 13.29 21.45 0.28 -56.20 16 2 C 0.00 0.14 5.46 84.66 0.46 0.60 16 3 Si 0.97 44.45 29.54 68.60 2.03 46.48 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.52 -29.73 8.58 25.60 0.22 -29.51 16 8 H 0.06 3.40 7.57 -2.91 -0.02 3.38 16 9 C 0.21 11.08 3.38 85.56 0.29 11.37 16 10 N -0.51 -21.46 4.65 -875.54 -4.07 -25.53 16 11 C 0.08 2.89 4.77 86.30 0.41 3.31 16 12 C -0.07 -1.75 5.39 29.85 0.16 -1.59 16 13 C -0.04 -1.05 5.17 -19.67 -0.10 -1.15 16 14 C -0.17 -3.81 9.82 22.36 0.22 -3.59 16 15 C 0.09 1.95 11.18 84.68 0.95 2.90 16 16 N -0.52 -13.27 10.36 -195.84 -2.03 -15.30 16 17 C 0.09 2.10 11.18 84.68 0.95 3.05 16 18 C -0.18 -4.37 9.82 22.36 0.22 -4.15 16 19 C 0.02 0.51 5.83 44.91 0.26 0.77 16 20 C -0.23 -7.86 9.56 30.59 0.29 -7.57 16 21 C -0.17 -5.45 9.91 30.59 0.30 -5.15 16 22 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 23 H -0.04 -2.41 7.82 -2.39 -0.02 -2.43 16 24 H 0.02 0.91 5.63 -2.39 -0.01 0.90 16 25 H 0.06 2.33 7.21 -2.39 -0.02 2.31 16 26 H 0.02 0.72 8.12 -2.39 -0.02 0.70 16 27 H 0.08 2.26 8.10 -2.39 -0.02 2.24 16 28 H 0.09 2.08 6.36 -2.39 -0.02 2.07 16 29 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 30 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 31 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 32 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 33 H 0.14 3.73 6.34 -2.38 -0.02 3.71 16 34 H 0.06 2.82 6.02 -2.38 -0.01 2.81 16 35 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 36 H 0.13 3.10 8.14 -2.39 -0.02 3.08 16 37 H 0.07 2.64 7.48 -2.39 -0.02 2.62 16 Total: -1.00 -67.16 306.68 1.89 -65.28 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 1.04 Total: 15.98 kcal Atomic # 6 Polarization: -35.34 SS G_CDS: 4.63 Total: -30.70 kcal Atomic # 7 Polarization: -91.22 SS G_CDS: -5.81 Total: -97.03 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -67.16 1.89 -65.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549341.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.345 kcal (2) G-P(sol) polarization free energy of solvation -67.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds