Wall clock time and date at job start Mon Mar 30 2020 05:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47127 * 2 1 4 4 H 1.08999 * 109.47007 * 304.99449 * 3 2 1 5 5 C 1.50700 * 109.47007 * 184.99380 * 3 2 1 6 6 H 1.08000 * 120.00348 * 239.99854 * 5 3 2 7 7 C 1.37879 * 119.99714 * 59.99976 * 5 3 2 8 8 N 1.31513 * 120.00160 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 120.00045 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46969 * 90.00052 * 9 7 5 11 11 H 1.48504 * 109.46831 * 210.00209 * 9 7 5 12 12 H 1.48494 * 109.46863 * 329.99939 * 9 7 5 13 13 C 1.50698 * 109.47140 * 64.99807 * 3 2 1 14 14 O 1.21255 * 120.00049 * 95.00262 * 13 3 2 15 15 C 1.47173 * 119.99877 * 274.99526 * 13 3 2 16 16 C 1.39868 * 120.16817 * 353.58180 * 15 13 3 17 17 C 1.37866 * 119.81949 * 179.71680 * 16 15 13 18 18 C 1.38426 * 120.17282 * 0.55679 * 17 16 15 19 19 C 1.50709 * 119.82618 * 179.73899 * 18 17 16 20 20 C 1.38385 * 120.34973 * 359.71516 * 18 17 16 21 21 C 1.37908 * 120.17088 * 0.02562 * 20 18 17 22 22 C 1.50696 * 120.08526 * 179.97438 * 21 20 18 23 23 H 1.09000 * 109.46582 * 60.00325 * 1 2 3 24 24 H 1.08994 * 109.47004 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47007 * 300.00607 * 1 2 3 26 26 H 1.09000 * 109.46582 * 119.99675 * 2 1 3 27 27 H 1.08999 * 109.47481 * 239.99621 * 2 1 3 28 28 H 0.97000 * 120.00280 * 179.97438 * 8 7 5 29 29 H 1.07993 * 120.08965 * 359.97438 * 16 15 13 30 30 H 1.08005 * 119.91446 * 180.25338 * 17 16 15 31 31 H 1.08998 * 109.46993 * 269.97508 * 19 18 17 32 32 H 1.09001 * 109.46672 * 29.97844 * 19 18 17 33 33 H 1.09000 * 109.46355 * 149.97585 * 19 18 17 34 34 H 1.07998 * 119.91475 * 180.02562 * 20 18 17 35 35 H 1.09002 * 109.47083 * 263.28462 * 22 21 20 36 36 H 1.08998 * 109.47499 * 23.29236 * 22 21 20 37 37 H 1.09000 * 109.46850 * 143.28784 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4443 -0.1237 6 1 4.1472 1.8888 0.6525 7 6 4.1434 0.8783 -1.2278 8 7 3.4064 0.3364 -2.1727 9 14 6.0051 0.8810 -1.3815 10 1 6.5549 -0.3504 -0.7598 11 1 6.3831 0.9221 -2.8171 12 1 6.5570 2.0736 -0.6900 13 6 1.6413 2.1163 1.2877 14 8 2.4157 2.1484 2.2202 15 6 0.3121 2.7354 1.4133 16 6 -0.5321 2.8195 0.3012 17 6 -1.7781 3.3957 0.4284 18 6 -2.1898 3.9005 1.6498 19 6 -3.5512 4.5340 1.7786 20 6 -1.3581 3.8262 2.7534 21 6 -0.1109 3.2480 2.6436 22 6 0.7934 3.1686 3.8464 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 3.8294 -0.0614 -2.9496 29 1 -0.2103 2.4304 -0.6534 30 1 -2.4328 3.4577 -0.4283 31 1 -3.4769 5.6009 1.5679 32 1 -4.2363 4.0703 1.0688 33 1 -3.9249 4.3889 2.7922 34 1 -1.6866 4.2219 3.7030 35 1 1.4949 4.0027 3.8293 36 1 0.1940 3.2165 4.7555 37 1 1.3455 2.2290 3.8244 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043368492.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:10 Heat of formation + Delta-G solvation = -46.005249 kcal Electronic energy + Delta-G solvation = -17982.334291 eV Core-core repulsion = 15302.366734 eV Total energy + Delta-G solvation = -2679.967557 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.28526 -39.21544 -36.45385 -34.26413 -33.94633 -32.57595 -29.74879 -28.40286 -28.05208 -25.55264 -23.42465 -23.35632 -21.50248 -20.14270 -18.48562 -17.61354 -16.86218 -16.37527 -16.12647 -15.80668 -15.31740 -14.92546 -14.53361 -14.44703 -14.10621 -14.03413 -13.75461 -13.52933 -13.29616 -13.16669 -12.81419 -12.73562 -12.56774 -12.51742 -12.42504 -12.09608 -11.90469 -11.71634 -11.54268 -10.96821 -10.51366 -9.92887 -9.64787 -9.49473 -8.15316 -6.27633 -0.15247 0.48015 1.38101 1.39023 1.49973 1.68973 2.40383 2.87725 3.12069 3.46069 3.85039 3.97074 4.02259 4.37068 4.42135 4.46465 4.53571 4.63299 4.67945 4.76371 4.82745 4.86824 4.90924 4.92654 5.03005 5.08808 5.23732 5.27511 5.32895 5.35243 5.45143 5.58371 5.64482 5.69420 5.74191 5.98295 6.07519 6.25608 6.76751 6.96390 7.39329 8.89186 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.031867 B = 0.006476 C = 0.005905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.433250 B = 4322.911723 C = 4740.313610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.101 4.101 3 C 0.007 3.993 4 H 0.042 0.958 5 C -0.535 4.535 6 H 0.043 0.957 7 C 0.022 3.978 8 N -0.907 5.907 9 Si 0.953 3.047 10 H -0.276 1.276 11 H -0.273 1.273 12 H -0.277 1.277 13 C 0.395 3.605 14 O -0.492 6.492 15 C -0.195 4.195 16 C -0.065 4.065 17 C -0.146 4.146 18 C -0.053 4.053 19 C -0.113 4.113 20 C -0.142 4.142 21 C -0.045 4.045 22 C -0.116 4.116 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.048 0.952 26 H 0.018 0.982 27 H 0.079 0.921 28 H 0.265 0.735 29 H 0.129 0.871 30 H 0.152 0.848 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.151 0.849 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.698 6.300 5.810 17.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.140 4.140 3 C -0.012 4.012 4 H 0.060 0.940 5 C -0.573 4.573 6 H 0.061 0.939 7 C -0.177 4.177 8 N -0.546 5.546 9 Si 0.778 3.222 10 H -0.202 1.202 11 H -0.198 1.198 12 H -0.202 1.202 13 C 0.277 3.723 14 O -0.371 6.371 15 C -0.196 4.196 16 C -0.083 4.083 17 C -0.163 4.163 18 C -0.053 4.053 19 C -0.169 4.169 20 C -0.160 4.160 21 C -0.045 4.045 22 C -0.172 4.172 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.037 0.963 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.146 0.854 30 H 0.170 0.830 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.169 0.831 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.284 6.225 6.113 16.738 hybrid contribution 1.561 -0.304 -0.384 1.636 sum -12.723 5.921 5.730 15.158 Atomic orbital electron populations 1.21999 0.95451 1.01323 1.01221 1.21302 0.94844 0.96757 1.01061 1.19119 0.95989 0.94416 0.91633 0.94044 1.21309 0.92090 1.38469 1.05413 0.93858 1.25583 1.02389 0.94611 0.95132 1.69937 1.36319 1.38677 1.09715 0.85639 0.80655 0.78381 0.77491 1.20152 1.19799 1.20210 1.23308 0.85229 0.74557 0.89222 1.90282 1.53625 1.52167 1.41046 1.20593 0.96968 1.06112 0.95942 1.21711 0.93776 0.95110 0.97746 1.21296 0.95938 1.00345 0.98741 1.20553 0.97323 0.94968 0.92465 1.20914 0.90895 1.00986 1.04101 1.21153 0.92850 1.01707 1.00264 1.20421 0.95734 0.94221 0.94139 1.20976 0.98387 1.02998 0.94845 0.92138 0.92549 0.93276 0.96320 0.90228 0.92545 0.85371 0.83029 0.89677 0.89988 0.90034 0.83112 0.91706 0.89588 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.44 8.33 71.98 0.60 -4.84 16 2 C -0.10 -4.93 5.23 30.60 0.16 -4.77 16 3 C 0.01 0.38 1.76 -12.29 -0.02 0.35 16 4 H 0.04 2.20 6.51 -2.39 -0.02 2.19 16 5 C -0.53 -31.48 8.33 25.60 0.21 -31.27 16 6 H 0.04 2.69 7.03 -2.91 -0.02 2.67 16 7 C 0.02 1.26 5.29 84.66 0.45 1.71 16 8 N -0.91 -51.55 11.29 21.45 0.24 -51.31 16 9 Si 0.95 45.26 29.54 68.60 2.03 47.29 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 13 C 0.40 18.96 5.81 28.03 0.16 19.13 16 14 O -0.49 -25.72 12.81 -2.95 -0.04 -25.75 16 15 C -0.20 -7.56 4.68 -20.15 -0.09 -7.66 16 16 C -0.07 -2.18 7.25 22.58 0.16 -2.01 16 17 C -0.15 -3.68 9.68 22.23 0.22 -3.47 16 18 C -0.05 -1.18 5.89 -19.78 -0.12 -1.30 16 19 C -0.11 -1.52 10.00 71.24 0.71 -0.80 16 20 C -0.14 -3.57 9.31 22.23 0.21 -3.36 16 21 C -0.04 -1.49 5.92 -19.56 -0.12 -1.61 16 22 C -0.12 -3.75 8.73 71.23 0.62 -3.13 16 23 H 0.06 2.16 6.81 -2.39 -0.02 2.14 16 24 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.05 1.81 5.49 -2.39 -0.01 1.79 16 26 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.08 4.25 5.95 -2.39 -0.01 4.23 16 28 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 29 H 0.13 4.49 4.87 -2.91 -0.01 4.47 16 30 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 0.91 8.08 -2.39 -0.02 0.89 16 33 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 34 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 35 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.09 2.10 8.04 -2.39 -0.02 2.08 16 37 H 0.06 2.45 5.87 -2.39 -0.01 2.44 16 Total: -1.00 -66.72 294.89 6.45 -60.27 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 1.06 Total: 12.51 kcal Atomic # 6 Polarization: -46.17 SS G_CDS: 3.16 Total: -43.01 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: 0.24 Total: -51.31 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.04 Total: -25.75 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -66.72 6.45 -60.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043368492.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.269 kcal (2) G-P(sol) polarization free energy of solvation -66.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds