Wall clock time and date at job start Mon Mar 30 2020 05:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47239 * 2 1 4 4 H 1.09003 * 109.47158 * 304.99691 * 3 2 1 5 5 C 1.50701 * 109.47189 * 184.99914 * 3 2 1 6 6 H 1.07995 * 120.00198 * 239.99742 * 5 3 2 7 7 C 1.37881 * 120.00050 * 59.99610 * 5 3 2 8 8 N 1.31514 * 119.99767 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00115 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47050 * 60.00005 * 9 7 5 11 11 H 1.48496 * 109.47388 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47460 * 300.00253 * 9 7 5 13 13 C 1.50694 * 109.47397 * 64.99771 * 3 2 1 14 14 O 1.21261 * 120.00149 * 95.00288 * 13 3 2 15 15 C 1.47170 * 120.00277 * 275.00115 * 13 3 2 16 16 C 1.39877 * 120.16585 * 353.62492 * 15 13 3 17 17 C 1.37861 * 119.82038 * 179.97438 * 16 15 13 18 18 C 1.38428 * 120.17561 * 359.97438 * 17 16 15 19 19 C 1.38383 * 120.34767 * 0.02562 * 18 17 16 20 20 C 1.50698 * 119.91444 * 180.02562 * 19 18 17 21 21 C 1.37906 * 120.17062 * 359.72057 * 19 18 17 22 22 C 1.50701 * 120.08586 * 180.28117 * 21 19 18 23 23 H 1.08997 * 109.46767 * 60.00125 * 1 2 3 24 24 H 1.09000 * 109.47044 * 300.00123 * 1 2 3 25 25 H 1.09004 * 109.46923 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46721 * 119.99839 * 2 1 3 27 27 H 1.08996 * 109.47262 * 239.99428 * 2 1 3 28 28 H 0.96999 * 119.99692 * 180.02562 * 8 7 5 29 29 H 1.08002 * 120.08820 * 0.02771 * 16 15 13 30 30 H 1.08007 * 119.91405 * 180.02562 * 17 16 15 31 31 H 1.07999 * 119.82562 * 180.02562 * 18 17 16 32 32 H 1.09000 * 109.47495 * 89.99470 * 20 19 18 33 33 H 1.08997 * 109.47157 * 210.00028 * 20 19 18 34 34 H 1.09011 * 109.46886 * 329.99530 * 20 19 18 35 35 H 1.08999 * 109.47137 * 263.57934 * 22 21 19 36 36 H 1.08996 * 109.47518 * 23.57876 * 22 21 19 37 37 H 1.09006 * 109.46769 * 143.58200 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8810 -1.3817 10 1 6.5975 0.1472 -0.2348 11 1 6.3978 0.2175 -2.6508 12 1 6.4996 2.2813 -1.3822 13 6 1.6414 2.1162 1.2876 14 8 2.4158 2.1484 2.2202 15 6 0.3121 2.7353 1.4133 16 6 -0.5325 2.8185 0.3015 17 6 -1.7764 3.3994 0.4275 18 6 -2.1904 3.8991 1.6502 19 6 -1.3605 3.8206 2.7548 20 6 -1.8213 4.3672 4.0814 21 6 -0.1154 3.2377 2.6462 22 6 0.7842 3.1474 3.8519 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 3.8293 -0.0613 -2.9498 29 1 -0.2114 2.4280 -0.6528 30 1 -2.4300 3.4641 -0.4300 31 1 -3.1661 4.3527 1.7426 32 1 -2.3351 3.5837 4.6386 33 1 -0.9589 4.7126 4.6514 34 1 -2.5035 5.2008 3.9137 35 1 1.4859 3.9815 3.8449 36 1 0.1813 3.1876 4.7590 37 1 1.3363 2.2079 3.8237 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043368550.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:20 Heat of formation + Delta-G solvation = -28.703654 kcal Electronic energy + Delta-G solvation = -18078.418959 eV Core-core repulsion = 15399.201655 eV Total energy + Delta-G solvation = -2679.217303 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.89003 -37.70669 -34.65184 -33.07630 -31.95065 -31.27391 -28.06704 -27.28836 -26.18372 -24.10171 -22.64825 -21.03813 -20.33753 -18.20926 -16.54185 -16.00132 -15.36435 -15.03567 -14.73323 -14.41930 -13.89680 -13.44681 -13.15600 -12.84770 -12.58081 -12.55289 -12.32838 -12.07122 -11.87379 -11.58484 -11.44218 -11.25933 -11.21711 -10.85290 -10.65433 -10.62814 -10.10199 -9.92797 -9.74527 -8.95287 -8.45294 -8.41712 -8.29486 -8.10337 -6.03406 -4.08272 1.20611 1.64414 3.22914 3.34530 3.37520 3.42814 4.19755 4.42503 4.89785 4.95989 5.11828 5.27505 5.29797 5.39242 5.49693 5.62437 5.72762 5.85383 5.94994 6.07494 6.15026 6.16932 6.23114 6.26561 6.37677 6.51640 6.60992 6.69561 6.73734 6.84986 6.94657 7.02704 7.17757 7.24621 7.57068 7.79172 8.01002 8.27004 8.70020 8.96672 9.56146 11.02856 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.032258 B = 0.006665 C = 0.006020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.801483 B = 4200.330701 C = 4650.219701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.108 4.108 3 C 0.012 3.988 4 H 0.051 0.949 5 C -0.507 4.507 6 H 0.066 0.934 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.897 3.103 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.397 3.603 14 O -0.459 6.459 15 C -0.154 4.154 16 C -0.067 4.067 17 C -0.144 4.144 18 C -0.099 4.099 19 C -0.113 4.113 20 C -0.111 4.111 21 C -0.037 4.037 22 C -0.121 4.121 23 H 0.049 0.951 24 H 0.042 0.958 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.104 0.896 28 H 0.262 0.738 29 H 0.140 0.860 30 H 0.122 0.878 31 H 0.118 0.882 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.267 5.051 6.445 13.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.146 4.146 3 C -0.007 4.007 4 H 0.069 0.931 5 C -0.545 4.545 6 H 0.085 0.915 7 C -0.139 4.139 8 N -0.532 5.532 9 Si 0.725 3.275 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.202 1.202 13 C 0.276 3.724 14 O -0.335 6.335 15 C -0.155 4.155 16 C -0.085 4.085 17 C -0.162 4.162 18 C -0.117 4.117 19 C -0.113 4.113 20 C -0.167 4.167 21 C -0.037 4.037 22 C -0.177 4.177 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.123 0.877 28 H 0.072 0.928 29 H 0.158 0.842 30 H 0.140 0.860 31 H 0.136 0.864 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.833 4.975 6.763 13.705 hybrid contribution 0.759 -0.010 -0.362 0.841 sum -10.074 4.966 6.401 12.927 Atomic orbital electron populations 1.22156 0.99013 0.99838 1.00404 1.21480 0.91687 0.98137 1.03338 1.19150 0.97681 0.93380 0.90441 0.93076 1.21073 0.90111 1.37787 1.05495 0.91537 1.24928 0.98405 0.95087 0.95520 1.69844 1.35031 1.38736 1.09551 0.86563 0.85391 0.78335 0.77209 1.20163 1.21290 1.20239 1.23313 0.83515 0.74966 0.90627 1.90305 1.52127 1.50531 1.40503 1.20943 0.98297 1.02572 0.93704 1.21753 0.92886 0.94859 0.98975 1.21056 0.96855 1.00763 0.97516 1.21106 0.98824 0.99207 0.92607 1.19677 0.94428 1.01188 0.96007 1.20769 1.01413 1.00373 0.94174 1.20107 0.94049 0.94535 0.95026 1.21088 0.98203 1.04840 0.93602 0.93154 0.93942 0.94454 0.94498 0.87749 0.92836 0.84246 0.85972 0.86409 0.91550 0.91343 0.91921 0.90982 0.92653 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 8.33 37.16 0.31 -2.68 16 2 C -0.11 -2.53 5.23 -26.73 -0.14 -2.67 16 3 C 0.01 0.30 1.76 -92.93 -0.16 0.14 16 4 H 0.05 1.29 6.51 -51.93 -0.34 0.95 16 5 C -0.51 -14.17 8.33 -34.44 -0.29 -14.46 16 6 H 0.07 1.93 7.03 -52.49 -0.37 1.57 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.78 11.29 55.43 0.63 -24.16 16 9 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 13 C 0.40 9.05 5.81 -30.69 -0.18 8.87 16 14 O -0.46 -11.23 12.82 5.57 0.07 -11.16 16 15 C -0.15 -2.96 4.68 -105.06 -0.49 -3.45 16 16 C -0.07 -1.14 7.25 -39.11 -0.28 -1.42 16 17 C -0.14 -2.03 10.03 -39.65 -0.40 -2.43 16 18 C -0.10 -1.31 9.69 -39.46 -0.38 -1.70 16 19 C -0.11 -1.61 5.87 -104.69 -0.61 -2.23 16 20 C -0.11 -1.20 9.18 36.00 0.33 -0.87 16 21 C -0.04 -0.63 5.92 -104.15 -0.62 -1.25 16 22 C -0.12 -1.96 8.08 36.01 0.29 -1.67 16 23 H 0.05 0.91 6.80 -51.93 -0.35 0.55 16 24 H 0.04 0.78 5.49 -51.93 -0.29 0.50 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 28 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 29 H 0.14 2.42 4.86 -52.49 -0.26 2.16 16 30 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 31 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.72 6.58 -51.93 -0.34 0.38 16 34 H 0.06 0.57 8.08 -51.92 -0.42 0.15 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.05 0.72 6.34 -51.93 -0.33 0.39 16 37 H 0.09 1.71 5.88 -51.93 -0.31 1.41 16 LS Contribution 290.96 15.07 4.38 4.38 Total: -1.00 -29.31 290.96 -7.63 -36.95 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -4.98 Total: 1.62 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: -2.72 Total: -24.20 kcal Atomic # 7 Polarization: -24.78 SS G_CDS: 0.63 Total: -24.16 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.07 Total: -11.16 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.31 -7.63 -36.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043368550.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.242 kcal (2) G-P(sol) polarization free energy of solvation -29.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds