Wall clock time and date at job start Mon Mar 30 2020 05:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47239 * 2 1 4 4 H 1.09003 * 109.47158 * 304.99691 * 3 2 1 5 5 C 1.50701 * 109.47189 * 184.99914 * 3 2 1 6 6 H 1.07995 * 120.00198 * 239.99742 * 5 3 2 7 7 C 1.37881 * 120.00050 * 59.99610 * 5 3 2 8 8 N 1.31514 * 119.99767 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00115 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47050 * 60.00005 * 9 7 5 11 11 H 1.48496 * 109.47388 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47460 * 300.00253 * 9 7 5 13 13 C 1.50694 * 109.47397 * 64.99771 * 3 2 1 14 14 O 1.21261 * 120.00149 * 95.00288 * 13 3 2 15 15 C 1.47170 * 120.00277 * 275.00115 * 13 3 2 16 16 C 1.39877 * 120.16585 * 353.62492 * 15 13 3 17 17 C 1.37861 * 119.82038 * 179.97438 * 16 15 13 18 18 C 1.38428 * 120.17561 * 359.97438 * 17 16 15 19 19 C 1.38383 * 120.34767 * 0.02562 * 18 17 16 20 20 C 1.50698 * 119.91444 * 180.02562 * 19 18 17 21 21 C 1.37906 * 120.17062 * 359.72057 * 19 18 17 22 22 C 1.50701 * 120.08586 * 180.28117 * 21 19 18 23 23 H 1.08997 * 109.46767 * 60.00125 * 1 2 3 24 24 H 1.09000 * 109.47044 * 300.00123 * 1 2 3 25 25 H 1.09004 * 109.46923 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46721 * 119.99839 * 2 1 3 27 27 H 1.08996 * 109.47262 * 239.99428 * 2 1 3 28 28 H 0.96999 * 119.99692 * 180.02562 * 8 7 5 29 29 H 1.08002 * 120.08820 * 0.02771 * 16 15 13 30 30 H 1.08007 * 119.91405 * 180.02562 * 17 16 15 31 31 H 1.07999 * 119.82562 * 180.02562 * 18 17 16 32 32 H 1.09000 * 109.47495 * 89.99470 * 20 19 18 33 33 H 1.08997 * 109.47157 * 210.00028 * 20 19 18 34 34 H 1.09011 * 109.46886 * 329.99530 * 20 19 18 35 35 H 1.08999 * 109.47137 * 263.57934 * 22 21 19 36 36 H 1.08996 * 109.47518 * 23.57876 * 22 21 19 37 37 H 1.09006 * 109.46769 * 143.58200 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8810 -1.3817 10 1 6.5975 0.1472 -0.2348 11 1 6.3978 0.2175 -2.6508 12 1 6.4996 2.2813 -1.3822 13 6 1.6414 2.1162 1.2876 14 8 2.4158 2.1484 2.2202 15 6 0.3121 2.7353 1.4133 16 6 -0.5325 2.8185 0.3015 17 6 -1.7764 3.3994 0.4275 18 6 -2.1904 3.8991 1.6502 19 6 -1.3605 3.8206 2.7548 20 6 -1.8213 4.3672 4.0814 21 6 -0.1154 3.2377 2.6462 22 6 0.7842 3.1474 3.8519 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 3.8293 -0.0613 -2.9498 29 1 -0.2114 2.4280 -0.6528 30 1 -2.4300 3.4641 -0.4300 31 1 -3.1661 4.3527 1.7426 32 1 -2.3351 3.5837 4.6386 33 1 -0.9589 4.7126 4.6514 34 1 -2.5035 5.2008 3.9137 35 1 1.4859 3.9815 3.8449 36 1 0.1813 3.1876 4.7590 37 1 1.3363 2.2079 3.8237 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043368550.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:19 Heat of formation + Delta-G solvation = -43.796611 kcal Electronic energy + Delta-G solvation = -18079.073438 eV Core-core repulsion = 15399.201655 eV Total energy + Delta-G solvation = -2679.871783 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.32805 -39.22475 -36.49095 -34.46728 -33.56065 -32.74863 -29.78520 -28.66600 -27.30293 -25.91187 -24.24190 -22.58842 -21.62862 -19.87012 -18.48656 -17.53278 -16.85071 -16.47113 -16.31494 -16.08838 -15.39478 -14.82780 -14.63959 -14.38108 -13.97632 -13.84422 -13.65098 -13.46054 -13.28852 -13.21683 -12.94269 -12.77565 -12.63104 -12.50446 -12.44737 -12.03281 -11.81412 -11.73366 -11.53944 -10.97832 -10.51627 -9.92372 -9.68207 -9.42545 -8.15474 -6.27873 -0.13327 0.46683 1.38469 1.39833 1.48173 1.70136 2.40128 2.88780 3.11887 3.42840 3.88673 3.98396 4.14565 4.30796 4.41006 4.46829 4.51276 4.58995 4.69826 4.75079 4.79547 4.87628 4.91055 4.98828 5.02577 5.06118 5.21897 5.25353 5.33559 5.37249 5.52752 5.55331 5.59270 5.72686 5.73938 5.97767 6.09325 6.25202 6.76134 6.95150 7.38949 8.88873 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.032258 B = 0.006665 C = 0.006020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.801483 B = 4200.330701 C = 4650.219701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.101 4.101 3 C 0.008 3.992 4 H 0.042 0.958 5 C -0.536 4.536 6 H 0.043 0.957 7 C 0.022 3.978 8 N -0.907 5.907 9 Si 0.953 3.047 10 H -0.278 1.278 11 H -0.273 1.273 12 H -0.274 1.274 13 C 0.394 3.606 14 O -0.491 6.491 15 C -0.184 4.184 16 C -0.079 4.079 17 C -0.137 4.137 18 C -0.085 4.085 19 C -0.111 4.111 20 C -0.111 4.111 21 C -0.053 4.053 22 C -0.116 4.116 23 H 0.060 0.940 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.018 0.982 27 H 0.079 0.921 28 H 0.265 0.735 29 H 0.127 0.873 30 H 0.155 0.845 31 H 0.161 0.839 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.994 6.195 6.838 16.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.140 4.140 3 C -0.011 4.011 4 H 0.060 0.940 5 C -0.574 4.574 6 H 0.061 0.939 7 C -0.177 4.177 8 N -0.546 5.546 9 Si 0.778 3.222 10 H -0.203 1.203 11 H -0.198 1.198 12 H -0.200 1.200 13 C 0.276 3.724 14 O -0.370 6.370 15 C -0.185 4.185 16 C -0.097 4.097 17 C -0.155 4.155 18 C -0.103 4.103 19 C -0.111 4.111 20 C -0.167 4.167 21 C -0.054 4.054 22 C -0.172 4.172 23 H 0.079 0.921 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.037 0.963 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.145 0.855 30 H 0.173 0.827 31 H 0.179 0.821 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.575 6.118 7.144 16.515 hybrid contribution 1.528 -0.319 -0.479 1.633 sum -12.047 5.799 6.665 14.939 Atomic orbital electron populations 1.22000 0.95427 1.01315 1.01231 1.21300 0.94864 0.96747 1.01050 1.19108 0.95973 0.94409 0.91595 0.94037 1.21282 0.92096 1.38601 1.05455 0.93853 1.25584 1.02408 0.94592 0.95128 1.69932 1.36395 1.38594 1.09669 0.85698 0.80609 0.78384 0.77489 1.20336 1.19790 1.19963 1.23333 0.85255 0.74565 0.89239 1.90286 1.53619 1.52058 1.41042 1.20617 0.96771 1.05264 0.95858 1.21723 0.94163 0.96042 0.97762 1.21424 0.95654 0.99092 0.99298 1.21629 1.00042 0.97173 0.91412 1.20100 0.93010 0.99746 0.98235 1.20859 1.02084 1.01550 0.92194 1.20281 0.95620 0.95298 0.94165 1.20999 0.98308 1.02794 0.95145 0.92099 0.93302 0.92556 0.96350 0.90218 0.92526 0.85482 0.82728 0.82126 0.90064 0.91316 0.89375 0.91841 0.89381 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.43 8.33 71.98 0.60 -4.83 16 2 C -0.10 -4.93 5.23 30.59 0.16 -4.77 16 3 C 0.01 0.41 1.76 -12.29 -0.02 0.39 16 4 H 0.04 2.21 6.51 -2.39 -0.02 2.19 16 5 C -0.54 -31.59 8.33 25.60 0.21 -31.38 16 6 H 0.04 2.68 7.03 -2.91 -0.02 2.66 16 7 C 0.02 1.27 5.29 84.66 0.45 1.72 16 8 N -0.91 -51.55 11.29 21.45 0.24 -51.30 16 9 Si 0.95 45.26 29.54 68.60 2.03 47.29 16 10 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 12 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 13 C 0.39 18.96 5.81 28.03 0.16 19.12 16 14 O -0.49 -25.70 12.82 -2.97 -0.04 -25.74 16 15 C -0.18 -7.14 4.68 -20.15 -0.09 -7.24 16 16 C -0.08 -2.61 7.25 22.58 0.16 -2.45 16 17 C -0.14 -3.38 10.03 22.23 0.22 -3.16 16 18 C -0.08 -1.83 9.69 22.35 0.22 -1.62 16 19 C -0.11 -2.78 5.87 -19.91 -0.12 -2.89 16 20 C -0.11 -1.89 9.18 71.24 0.65 -1.23 16 21 C -0.05 -1.78 5.92 -19.56 -0.12 -1.89 16 22 C -0.12 -3.79 8.08 71.24 0.58 -3.21 16 23 H 0.06 2.17 6.80 -2.39 -0.02 2.15 16 24 H 0.05 1.80 5.49 -2.39 -0.01 1.78 16 25 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 26 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 27 H 0.08 4.25 5.95 -2.39 -0.01 4.24 16 28 H 0.27 14.28 8.31 -92.71 -0.77 13.50 16 29 H 0.13 4.44 4.86 -2.91 -0.01 4.43 16 30 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 31 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.19 6.58 -2.39 -0.02 1.18 16 34 H 0.09 1.10 8.08 -2.38 -0.02 1.08 16 35 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.09 2.18 6.34 -2.39 -0.02 2.16 16 37 H 0.06 2.40 5.88 -2.38 -0.01 2.38 16 Total: -1.00 -67.00 290.96 6.37 -60.63 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 1.07 Total: 12.55 kcal Atomic # 6 Polarization: -46.50 SS G_CDS: 3.07 Total: -43.43 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: 0.24 Total: -51.30 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.04 Total: -25.74 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -67.00 6.37 -60.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043368550.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.838 kcal (2) G-P(sol) polarization free energy of solvation -67.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds