Wall clock time and date at job start Mon Mar 30 2020 05:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47178 * 2 1 4 4 H 1.08995 * 109.47564 * 305.57456 * 3 2 1 5 5 C 1.50708 * 109.46623 * 65.57410 * 3 2 1 6 6 H 1.07997 * 120.00143 * 27.39371 * 5 3 2 7 7 C 1.37875 * 119.99553 * 207.39954 * 5 3 2 8 8 N 1.31509 * 120.00227 * 353.37395 * 7 5 3 9 9 Si 1.86805 * 119.99940 * 173.37336 * 7 5 3 10 10 H 1.48498 * 109.47126 * 89.99566 * 9 7 5 11 11 H 1.48499 * 109.46993 * 209.99995 * 9 7 5 12 12 H 1.48499 * 109.46776 * 329.99879 * 9 7 5 13 13 C 1.50704 * 109.46985 * 185.56438 * 3 2 1 14 14 O 1.21249 * 120.00111 * 270.00577 * 13 3 2 15 15 C 1.47169 * 119.99476 * 90.00656 * 13 3 2 16 16 C 1.39847 * 120.17271 * 359.72329 * 15 13 3 17 17 C 1.37885 * 119.82657 * 179.81407 * 16 15 13 18 18 C 1.50703 * 119.91886 * 180.20728 * 17 16 15 19 19 C 1.38409 * 120.16730 * 0.43664 * 17 16 15 20 20 C 1.38400 * 120.35026 * 359.79421 * 19 17 16 21 21 C 1.50696 * 119.91193 * 179.97438 * 20 19 17 22 22 C 1.37887 * 120.17276 * 359.97438 * 20 19 17 23 23 H 1.09000 * 109.47409 * 174.27169 * 1 2 3 24 24 H 1.08997 * 109.46793 * 294.27241 * 1 2 3 25 25 H 1.09004 * 109.46933 * 54.27022 * 1 2 3 26 26 H 1.09007 * 109.46759 * 240.00757 * 2 1 3 27 27 H 1.08995 * 109.47050 * 120.00745 * 2 1 3 28 28 H 0.97002 * 120.00460 * 354.63922 * 8 7 5 29 29 H 1.08006 * 120.09227 * 0.02562 * 16 15 13 30 30 H 1.08996 * 109.47027 * 270.23335 * 18 17 16 31 31 H 1.09004 * 109.46492 * 30.23802 * 18 17 16 32 32 H 1.09005 * 109.46919 * 150.22866 * 18 17 16 33 33 H 1.08004 * 119.81923 * 179.76609 * 19 17 16 34 34 H 1.09004 * 109.47095 * 270.01758 * 21 20 19 35 35 H 1.08997 * 109.47328 * 30.02063 * 21 20 19 36 36 H 1.09003 * 109.47176 * 150.02077 * 21 20 19 37 37 H 1.08001 * 120.08662 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5975 1.9844 -0.8358 5 6 1.6535 2.1118 1.2938 6 1 1.5155 1.5211 2.1872 7 6 1.4759 3.4784 1.3366 8 7 1.7691 4.2129 0.2858 9 14 0.8187 4.2868 2.8871 10 1 1.9529 4.6560 3.7717 11 1 0.0563 5.5082 2.5236 12 1 -0.0756 3.3385 3.5987 13 6 3.5408 1.4446 -0.1378 14 8 4.2405 1.4115 0.8519 15 6 4.1569 1.4871 -1.4736 16 6 3.3532 1.5196 -2.6176 17 6 3.9380 1.5631 -3.8656 18 6 3.0739 1.6029 -5.0996 19 6 5.3167 1.5655 -3.9879 20 6 6.1188 1.5287 -2.8607 21 6 7.6188 1.5311 -3.0054 22 6 5.5491 1.4897 -1.6056 23 1 -0.3634 -1.0225 -0.1026 24 1 -0.3633 0.4224 0.9368 25 1 -0.3633 0.6001 -0.8343 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 2.1827 3.8050 -0.4910 29 1 2.2772 1.5140 -2.5239 30 1 2.8645 0.5854 -5.4294 31 1 2.1370 2.1109 -4.8708 32 1 3.5953 2.1414 -5.8910 33 1 5.7688 1.5959 -4.9683 34 1 7.9790 0.5045 -3.0732 35 1 7.8958 2.0737 -3.9092 36 1 8.0667 2.0168 -2.1384 37 1 6.1764 1.4614 -0.7269 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043393027.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:21 Heat of formation + Delta-G solvation = -45.075311 kcal Electronic energy + Delta-G solvation = -17799.078263 eV Core-core repulsion = 15119.151031 eV Total energy + Delta-G solvation = -2679.927232 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.58359 -37.76908 -34.57844 -33.33508 -31.97338 -31.65483 -27.62896 -27.08406 -26.26419 -24.31146 -22.87097 -20.81865 -20.28691 -18.58257 -16.77827 -16.28529 -15.31493 -15.06666 -14.18073 -13.96666 -13.74567 -13.71442 -13.25975 -13.21993 -13.13548 -12.73467 -12.44771 -12.17352 -11.90515 -11.76791 -11.29658 -11.21915 -11.05187 -10.97009 -10.78199 -10.68464 -10.25694 -10.09402 -9.61854 -8.80579 -8.59164 -8.42743 -8.31792 -8.14451 -6.39645 -4.10069 1.23873 1.64332 3.26690 3.45763 3.48713 3.63867 4.26042 4.52639 4.85904 4.90945 5.00906 5.31284 5.34900 5.44961 5.53813 5.62934 5.69646 5.73025 5.74834 5.91042 5.93554 5.95440 6.00415 6.13285 6.30642 6.33949 6.51985 6.59266 6.69345 6.73006 6.79888 6.85297 7.01803 7.10173 7.22235 7.28657 8.05982 8.41116 8.74434 8.83729 9.58719 10.98421 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022627 B = 0.007047 C = 0.006509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.146735 B = 3972.207700 C = 4300.956745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 C -0.010 4.010 4 H 0.057 0.943 5 C -0.570 4.570 6 H 0.055 0.945 7 C 0.020 3.980 8 N -0.908 5.908 9 Si 1.070 2.930 10 H -0.288 1.288 11 H -0.283 1.283 12 H -0.287 1.287 13 C 0.388 3.612 14 O -0.456 6.456 15 C -0.144 4.144 16 C -0.076 4.076 17 C -0.101 4.101 18 C -0.111 4.111 19 C -0.106 4.106 20 C -0.103 4.103 21 C -0.110 4.110 22 C -0.080 4.080 23 H 0.034 0.966 24 H 0.064 0.936 25 H 0.046 0.954 26 H 0.036 0.964 27 H 0.052 0.948 28 H 0.267 0.733 29 H 0.132 0.868 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.119 0.881 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.233 -6.035 -10.008 12.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.135 4.135 3 C -0.029 4.029 4 H 0.075 0.925 5 C -0.608 4.608 6 H 0.074 0.926 7 C -0.184 4.184 8 N -0.543 5.543 9 Si 0.898 3.102 10 H -0.215 1.215 11 H -0.209 1.209 12 H -0.213 1.213 13 C 0.265 3.735 14 O -0.331 6.331 15 C -0.145 4.145 16 C -0.094 4.094 17 C -0.101 4.101 18 C -0.167 4.167 19 C -0.124 4.124 20 C -0.103 4.103 21 C -0.166 4.166 22 C -0.098 4.098 23 H 0.053 0.947 24 H 0.084 0.916 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.150 0.850 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.137 0.863 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.113 -4.593 -8.841 10.778 hybrid contribution 0.654 -1.336 -0.740 1.661 sum 4.767 -5.929 -9.581 12.233 Atomic orbital electron populations 1.21588 0.95758 0.98953 1.02650 1.21286 0.96179 0.96538 0.99499 1.19456 0.88600 0.94421 1.00442 0.92480 1.21703 1.50099 0.94352 0.94627 0.92638 1.25881 0.95202 0.94407 1.02910 1.70791 1.39138 1.38901 1.05461 0.83535 0.76510 0.75709 0.74479 1.21480 1.20906 1.21265 1.23969 0.94270 0.69769 0.85503 1.90322 1.65997 1.35955 1.40777 1.21276 0.93985 1.02268 0.97014 1.21432 1.00272 0.96724 0.90969 1.19842 0.94002 1.01149 0.95091 1.20758 0.99184 1.02033 0.94755 1.20977 0.92922 1.00730 0.97790 1.19804 0.95949 1.01503 0.93036 1.20745 0.91412 1.01999 1.02475 1.21324 0.94444 0.97062 0.96957 0.94679 0.91649 0.93527 0.94502 0.92908 0.92212 0.85031 0.91410 0.91298 0.91798 0.86343 0.91462 0.91762 0.91567 0.85560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 9.64 37.16 0.36 -2.12 16 2 C -0.10 -2.02 5.37 -26.73 -0.14 -2.17 16 3 C -0.01 -0.24 1.17 -92.92 -0.11 -0.35 16 4 H 0.06 1.43 5.37 -51.93 -0.28 1.15 16 5 C -0.57 -15.90 6.86 -34.44 -0.24 -16.14 16 6 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 7 C 0.02 0.58 5.45 -17.82 -0.10 0.48 16 8 N -0.91 -27.19 13.56 55.43 0.75 -26.44 16 9 Si 1.07 25.61 29.91 -169.99 -5.08 20.53 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.39 9.56 5.88 -30.68 -0.18 9.38 16 14 O -0.46 -12.51 16.35 5.58 0.09 -12.42 16 15 C -0.14 -3.02 5.87 -105.07 -0.62 -3.63 16 16 C -0.08 -1.39 9.01 -39.11 -0.35 -1.74 16 17 C -0.10 -1.54 5.87 -104.69 -0.61 -2.15 16 18 C -0.11 -1.29 10.01 36.01 0.36 -0.93 16 19 C -0.11 -1.52 9.34 -39.46 -0.37 -1.89 16 20 C -0.10 -1.59 5.87 -104.69 -0.61 -2.20 16 21 C -0.11 -1.28 10.01 36.00 0.36 -0.92 16 22 C -0.08 -1.50 9.25 -39.11 -0.36 -1.86 16 23 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.06 1.32 7.59 -51.93 -0.39 0.92 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.27 7.92 6.70 -40.82 -0.27 7.64 16 29 H 0.13 2.36 6.37 -52.48 -0.33 2.03 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 32 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 33 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 36 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 37 H 0.13 2.39 7.65 -52.49 -0.40 1.99 16 LS Contribution 311.46 15.07 4.69 4.69 Total: -1.00 -31.94 311.46 -7.69 -39.63 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -5.53 Total: 0.25 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: -2.62 Total: -26.25 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.75 Total: -26.44 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.09 Total: -12.42 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -5.08 Total: 20.53 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.94 -7.69 -39.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043393027.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.443 kcal (2) G-P(sol) polarization free energy of solvation -31.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds