Wall clock time and date at job start Mon Mar 30 2020 05:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47178 * 2 1 4 4 H 1.08995 * 109.47564 * 305.57456 * 3 2 1 5 5 C 1.50708 * 109.46623 * 65.57410 * 3 2 1 6 6 H 1.07997 * 120.00143 * 27.39371 * 5 3 2 7 7 C 1.37875 * 119.99553 * 207.39954 * 5 3 2 8 8 N 1.31509 * 120.00227 * 353.37395 * 7 5 3 9 9 Si 1.86805 * 119.99940 * 173.37336 * 7 5 3 10 10 H 1.48498 * 109.47126 * 89.99566 * 9 7 5 11 11 H 1.48499 * 109.46993 * 209.99995 * 9 7 5 12 12 H 1.48499 * 109.46776 * 329.99879 * 9 7 5 13 13 C 1.50704 * 109.46985 * 185.56438 * 3 2 1 14 14 O 1.21249 * 120.00111 * 270.00577 * 13 3 2 15 15 C 1.47169 * 119.99476 * 90.00656 * 13 3 2 16 16 C 1.39847 * 120.17271 * 359.72329 * 15 13 3 17 17 C 1.37885 * 119.82657 * 179.81407 * 16 15 13 18 18 C 1.50703 * 119.91886 * 180.20728 * 17 16 15 19 19 C 1.38409 * 120.16730 * 0.43664 * 17 16 15 20 20 C 1.38400 * 120.35026 * 359.79421 * 19 17 16 21 21 C 1.50696 * 119.91193 * 179.97438 * 20 19 17 22 22 C 1.37887 * 120.17276 * 359.97438 * 20 19 17 23 23 H 1.09000 * 109.47409 * 174.27169 * 1 2 3 24 24 H 1.08997 * 109.46793 * 294.27241 * 1 2 3 25 25 H 1.09004 * 109.46933 * 54.27022 * 1 2 3 26 26 H 1.09007 * 109.46759 * 240.00757 * 2 1 3 27 27 H 1.08995 * 109.47050 * 120.00745 * 2 1 3 28 28 H 0.97002 * 120.00460 * 354.63922 * 8 7 5 29 29 H 1.08006 * 120.09227 * 0.02562 * 16 15 13 30 30 H 1.08996 * 109.47027 * 270.23335 * 18 17 16 31 31 H 1.09004 * 109.46492 * 30.23802 * 18 17 16 32 32 H 1.09005 * 109.46919 * 150.22866 * 18 17 16 33 33 H 1.08004 * 119.81923 * 179.76609 * 19 17 16 34 34 H 1.09004 * 109.47095 * 270.01758 * 21 20 19 35 35 H 1.08997 * 109.47328 * 30.02063 * 21 20 19 36 36 H 1.09003 * 109.47176 * 150.02077 * 21 20 19 37 37 H 1.08001 * 120.08662 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5975 1.9844 -0.8358 5 6 1.6535 2.1118 1.2938 6 1 1.5155 1.5211 2.1872 7 6 1.4759 3.4784 1.3366 8 7 1.7691 4.2129 0.2858 9 14 0.8187 4.2868 2.8871 10 1 1.9529 4.6560 3.7717 11 1 0.0563 5.5082 2.5236 12 1 -0.0756 3.3385 3.5987 13 6 3.5408 1.4446 -0.1378 14 8 4.2405 1.4115 0.8519 15 6 4.1569 1.4871 -1.4736 16 6 3.3532 1.5196 -2.6176 17 6 3.9380 1.5631 -3.8656 18 6 3.0739 1.6029 -5.0996 19 6 5.3167 1.5655 -3.9879 20 6 6.1188 1.5287 -2.8607 21 6 7.6188 1.5311 -3.0054 22 6 5.5491 1.4897 -1.6056 23 1 -0.3634 -1.0225 -0.1026 24 1 -0.3633 0.4224 0.9368 25 1 -0.3633 0.6001 -0.8343 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 2.1827 3.8050 -0.4910 29 1 2.2772 1.5140 -2.5239 30 1 2.8645 0.5854 -5.4294 31 1 2.1370 2.1109 -4.8708 32 1 3.5953 2.1414 -5.8910 33 1 5.7688 1.5959 -4.9683 34 1 7.9790 0.5045 -3.0732 35 1 7.8958 2.0737 -3.9092 36 1 8.0667 2.0168 -2.1384 37 1 6.1764 1.4614 -0.7269 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043393027.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:21 Heat of formation + Delta-G solvation = -62.380568 kcal Electronic energy + Delta-G solvation = -17799.828675 eV Core-core repulsion = 15119.151031 eV Total energy + Delta-G solvation = -2680.677644 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.12820 -39.43886 -36.50660 -34.51033 -33.92188 -33.09202 -29.26333 -28.21715 -27.55399 -26.27324 -24.51087 -22.46603 -21.58013 -20.35576 -18.79040 -17.81681 -16.76771 -16.60184 -15.96905 -15.65576 -15.43949 -15.38509 -14.75283 -14.52736 -14.09581 -14.03417 -13.97129 -13.70155 -13.35975 -12.93752 -12.80208 -12.72535 -12.67080 -12.44846 -12.41772 -12.01853 -11.96391 -11.93291 -11.50054 -10.84459 -10.68947 -10.12955 -9.77840 -9.59124 -8.66637 -6.35808 -0.23682 0.34234 1.48686 1.55927 1.63572 1.75267 2.52822 2.79486 3.04356 3.45408 3.77962 3.83860 4.08321 4.22266 4.26142 4.34582 4.35569 4.43886 4.57346 4.63527 4.75087 4.79048 4.82849 4.86265 4.94961 4.98735 5.07969 5.14463 5.17626 5.30492 5.35509 5.39919 5.49740 5.53572 5.57525 5.95673 5.99905 6.14837 6.55970 6.88089 7.38900 8.72506 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022627 B = 0.007047 C = 0.006509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.146735 B = 3972.207700 C = 4300.956745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.093 4.093 3 C -0.015 4.015 4 H 0.050 0.950 5 C -0.579 4.579 6 H 0.041 0.959 7 C -0.029 4.029 8 N -0.932 5.932 9 Si 1.110 2.890 10 H -0.287 1.287 11 H -0.276 1.276 12 H -0.266 1.266 13 C 0.385 3.615 14 O -0.505 6.505 15 C -0.180 4.180 16 C -0.089 4.089 17 C -0.096 4.096 18 C -0.109 4.109 19 C -0.093 4.093 20 C -0.098 4.098 21 C -0.108 4.108 22 C -0.101 4.101 23 H 0.071 0.929 24 H 0.044 0.956 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.039 0.961 28 H 0.257 0.743 29 H 0.125 0.875 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.164 0.836 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.608 -6.599 -12.697 15.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.131 4.131 3 C -0.035 4.035 4 H 0.068 0.932 5 C -0.616 4.616 6 H 0.059 0.941 7 C -0.228 4.228 8 N -0.569 5.569 9 Si 0.932 3.068 10 H -0.213 1.213 11 H -0.201 1.201 12 H -0.190 1.190 13 C 0.266 3.734 14 O -0.383 6.383 15 C -0.181 4.181 16 C -0.107 4.107 17 C -0.096 4.096 18 C -0.165 4.165 19 C -0.110 4.110 20 C -0.098 4.098 21 C -0.165 4.165 22 C -0.120 4.120 23 H 0.090 0.910 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.143 0.857 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.182 0.818 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.473 -5.180 -11.552 13.428 hybrid contribution 0.603 -1.225 -0.022 1.366 sum 5.076 -6.405 -11.574 14.169 Atomic orbital electron populations 1.21530 0.93887 1.01185 1.01688 1.21262 0.97795 0.94143 0.99925 1.19492 0.89105 0.96297 0.98570 0.93192 1.21975 1.49560 0.94594 0.95501 0.94063 1.27185 0.95252 0.95459 1.04881 1.70897 1.40963 1.39054 1.05983 0.83034 0.76498 0.75657 0.71611 1.21330 1.20061 1.19046 1.24156 0.94249 0.68106 0.86926 1.90280 1.66680 1.38826 1.42539 1.20992 0.95303 1.06232 0.95601 1.21474 0.99851 0.97724 0.91670 1.20294 0.95220 0.99061 0.95063 1.20849 0.98561 1.03665 0.93468 1.21519 0.92387 0.97831 0.99297 1.20234 0.98314 0.99485 0.91786 1.20835 0.88394 1.03568 1.03670 1.21365 0.93523 0.98730 0.98351 0.91026 0.93640 0.93202 0.92197 0.94233 0.93320 0.85695 0.89396 0.91723 0.89199 0.81816 0.89657 0.88976 0.91993 0.87167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 9.64 71.98 0.69 -3.95 16 2 C -0.09 -3.96 5.37 30.59 0.16 -3.80 16 3 C -0.02 -0.79 1.17 -12.28 -0.01 -0.80 16 4 H 0.05 2.61 5.37 -2.39 -0.01 2.60 16 5 C -0.58 -33.57 6.86 25.60 0.18 -33.39 16 6 H 0.04 2.44 7.82 -2.91 -0.02 2.42 16 7 C -0.03 -1.73 5.45 84.65 0.46 -1.27 16 8 N -0.93 -57.61 13.56 21.45 0.29 -57.32 16 9 Si 1.11 52.50 29.91 68.60 2.05 54.56 16 10 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 13 C 0.39 20.01 5.88 28.03 0.16 20.18 16 14 O -0.50 -29.55 16.35 -2.93 -0.05 -29.60 16 15 C -0.18 -7.81 5.87 -20.15 -0.12 -7.93 16 16 C -0.09 -3.25 9.01 22.58 0.20 -3.05 16 17 C -0.10 -2.69 5.87 -19.91 -0.12 -2.81 16 18 C -0.11 -2.13 10.01 71.24 0.71 -1.41 16 19 C -0.09 -2.30 9.34 22.35 0.21 -2.09 16 20 C -0.10 -2.82 5.87 -19.91 -0.12 -2.94 16 21 C -0.11 -2.18 10.01 71.23 0.71 -1.47 16 22 C -0.10 -3.90 9.25 22.58 0.21 -3.69 16 23 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 24 H 0.04 1.84 7.59 -2.39 -0.02 1.82 16 25 H 0.05 1.78 8.14 -2.38 -0.02 1.77 16 26 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 27 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.26 15.91 6.70 -92.71 -0.62 15.29 16 29 H 0.13 4.59 6.37 -2.91 -0.02 4.58 16 30 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 1.34 8.08 -2.38 -0.02 1.32 16 32 H 0.09 1.33 8.08 -2.38 -0.02 1.31 16 33 H 0.16 2.64 8.06 -2.91 -0.02 2.61 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.09 1.38 8.08 -2.39 -0.02 1.36 16 36 H 0.06 1.31 8.08 -2.39 -0.02 1.29 16 37 H 0.11 4.45 7.65 -2.91 -0.02 4.43 16 Total: -1.00 -73.37 311.46 6.82 -66.55 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 1.19 Total: 14.23 kcal Atomic # 6 Polarization: -51.76 SS G_CDS: 3.34 Total: -48.42 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: 0.29 Total: -57.32 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -0.05 Total: -29.60 kcal Atomic # 14 Polarization: 52.50 SS G_CDS: 2.05 Total: 54.56 kcal Total: -73.37 6.82 -66.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043393027.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.171 kcal (2) G-P(sol) polarization free energy of solvation -73.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds