Wall clock time and date at job start Mon Mar 30 2020 05:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86801 * 119.99708 * 2 1 4 4 H 1.48509 * 109.46526 * 269.99443 * 3 2 1 5 5 H 1.48492 * 109.47450 * 29.99383 * 3 2 1 6 6 H 1.48495 * 109.46982 * 149.99899 * 3 2 1 7 7 C 1.37877 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00211 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99754 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47218 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47287 * 180.02562 * 10 9 7 12 12 N 1.46895 * 109.47106 * 179.97438 * 11 10 9 13 13 C 1.47909 * 110.99927 * 170.23349 * 12 11 10 14 14 C 1.54581 * 102.63557 * 94.42143 * 13 12 11 15 15 C 1.51599 * 102.95771 * 25.34015 * 14 13 12 16 16 C 1.37923 * 131.46519 * 163.26671 * 15 14 13 17 17 C 1.38869 * 120.02117 * 181.09341 * 16 15 14 18 18 N 1.40011 * 120.13230 * 180.23908 * 17 16 15 19 19 C 1.38874 * 119.73412 * 0.26095 * 17 16 15 20 20 C 1.37887 * 120.18181 * 359.82526 * 19 17 16 21 21 C 1.38919 * 107.97886 * 344.49694 * 15 14 13 22 22 H 0.96996 * 120.00129 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.46692 * 60.00455 * 9 7 2 24 24 H 1.08998 * 109.47338 * 300.00568 * 9 7 2 25 25 H 1.09002 * 109.47138 * 59.99653 * 10 9 7 26 26 H 1.09008 * 109.47056 * 300.00396 * 10 9 7 27 27 H 1.08997 * 109.46817 * 59.99920 * 11 10 9 28 28 H 1.08998 * 109.47144 * 300.00075 * 11 10 9 29 29 H 1.09008 * 110.77386 * 212.70933 * 13 12 11 30 30 H 1.09003 * 110.77790 * 336.13493 * 13 12 11 31 31 H 1.09007 * 110.72975 * 143.91734 * 14 13 12 32 32 H 1.08993 * 110.73082 * 267.03815 * 14 13 12 33 33 H 1.08002 * 119.99266 * 1.37686 * 16 15 14 34 34 H 0.96993 * 119.99981 * 359.97438 * 18 17 16 35 35 H 0.97003 * 119.99672 * 180.02562 * 18 17 16 36 36 H 1.08000 * 119.90866 * 179.85431 * 19 17 16 37 37 H 1.07999 * 119.85557 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0022 12 7 6.0413 -4.0214 0.0027 13 6 7.5012 -4.0675 -0.2303 14 6 8.0718 -4.1089 1.2057 15 6 6.9356 -4.7153 2.0056 16 6 6.9058 -5.2887 3.2596 17 6 5.7158 -5.7981 3.7625 18 7 5.6819 -6.3762 5.0372 19 6 4.5597 -5.7321 2.9959 20 6 4.5914 -5.1601 1.7417 21 6 5.7829 -4.6460 1.2333 22 1 -0.4850 0.8400 -0.0004 23 1 3.8745 -0.6801 0.8912 24 1 3.8753 -0.6803 -0.8888 25 1 3.6586 -3.1501 -0.8892 26 1 3.6579 -3.1506 0.8908 27 1 5.9142 -2.1229 0.8927 28 1 5.9157 -2.1223 -0.8872 29 1 7.7765 -4.9665 -0.7819 30 1 7.8376 -3.1728 -0.7544 31 1 8.9590 -4.7407 1.2504 32 1 8.2977 -3.1033 1.5603 33 1 7.8072 -5.3376 3.8524 34 1 6.4906 -6.4219 5.5707 35 1 4.8496 -6.7318 5.3865 36 1 3.6333 -6.1295 3.3833 37 1 3.6891 -5.1112 1.1501 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578655.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:45 Heat of formation + Delta-G solvation = 30.019037 kcal Electronic energy + Delta-G solvation = -17434.136948 eV Core-core repulsion = 14789.758803 eV Total energy + Delta-G solvation = -2644.378145 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.56583 -37.44638 -34.38293 -33.26737 -32.38957 -30.90336 -28.74402 -27.81877 -26.31916 -23.07818 -22.67491 -21.12566 -20.54458 -19.85970 -16.95394 -16.76328 -16.49012 -15.95196 -15.29402 -14.86846 -14.29139 -14.08784 -13.53877 -13.26323 -13.01748 -12.79734 -12.57421 -12.45023 -12.21757 -11.89646 -11.58493 -11.31186 -10.98991 -10.72375 -10.60996 -10.31416 -9.86075 -9.66100 -9.50732 -9.11082 -8.63107 -8.51690 -8.47762 -7.03529 -5.98852 -3.95969 1.54666 1.73150 3.34139 3.41146 3.45496 3.76875 3.92517 4.09510 4.50077 4.66782 4.92067 5.09565 5.14521 5.35227 5.38655 5.46797 5.62085 5.70985 5.74019 5.83853 5.87179 6.00793 6.17872 6.22601 6.35417 6.40006 6.58899 6.61876 6.78848 6.85220 7.01210 7.28245 7.38922 7.42742 7.52300 7.68038 7.74889 7.86151 8.61134 9.07003 9.64140 11.14824 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024373 B = 0.005566 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.558732 B = 5029.056714 C = 5672.951506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.515 4.515 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.102 4.102 11 C 0.055 3.945 12 N -0.490 5.490 13 C 0.050 3.950 14 C -0.110 4.110 15 C -0.097 4.097 16 C -0.171 4.171 17 C 0.198 3.802 18 N -0.884 5.884 19 C -0.180 4.180 20 C -0.055 4.055 21 C 0.045 3.955 22 H 0.262 0.738 23 H 0.013 0.987 24 H 0.010 0.990 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.032 0.968 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.394 0.606 35 H 0.397 0.603 36 H 0.123 0.877 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.443 -11.337 6.534 21.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.553 4.553 8 H 0.090 0.910 9 C -0.050 4.050 10 C -0.140 4.140 11 C -0.070 4.070 12 N -0.208 5.208 13 C -0.077 4.077 14 C -0.148 4.148 15 C -0.101 4.101 16 C -0.194 4.194 17 C 0.095 3.905 18 N -0.424 5.424 19 C -0.203 4.203 20 C -0.075 4.075 21 C -0.052 4.052 22 H 0.072 0.928 23 H 0.031 0.969 24 H 0.029 0.971 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.051 0.949 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.131 0.869 34 H 0.221 0.779 35 H 0.224 0.776 36 H 0.141 0.859 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 16.018 -11.409 6.015 20.565 hybrid contribution 0.721 1.208 1.006 1.729 sum 16.740 -10.201 7.021 20.822 Atomic orbital electron populations 1.69922 1.06273 1.26757 1.51549 1.25031 0.94713 0.99105 0.94703 0.86782 0.80358 0.83715 0.78457 1.20300 1.21465 1.19107 1.21144 0.89490 0.94433 1.50280 0.91009 1.19543 0.97185 0.92311 0.95998 1.21568 0.90867 0.99633 1.01891 1.22448 0.98472 0.85814 1.00248 1.60402 1.13699 1.17126 1.29577 1.23117 0.86417 1.02743 0.95450 1.21682 0.96867 1.00871 0.95390 1.20704 0.96258 0.99275 0.93819 1.19640 0.96607 1.06818 0.96331 1.17576 0.93522 0.93567 0.85829 1.42396 1.13880 1.69735 1.16390 1.20377 0.97017 1.07409 0.95490 1.20439 0.96718 0.95606 0.94755 1.19322 0.94061 1.01595 0.90199 0.92837 0.96912 0.97143 0.92042 0.92292 0.94938 0.90932 0.89753 0.90049 0.90118 0.90351 0.86873 0.77871 0.77554 0.85895 0.85192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.50 13.96 55.43 0.77 -27.72 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 22.23 27.47 -169.99 -4.67 17.56 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 7 C -0.52 -15.11 9.66 -34.44 -0.33 -15.45 16 8 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 9 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 10 C -0.10 -2.14 5.02 -26.73 -0.13 -2.27 16 11 C 0.06 0.97 4.75 -3.83 -0.02 0.95 16 12 N -0.49 -7.86 5.07 -168.93 -0.86 -8.72 16 13 C 0.05 0.62 7.00 -2.44 -0.02 0.61 16 14 C -0.11 -1.29 6.96 -26.61 -0.19 -1.47 16 15 C -0.10 -1.39 6.23 -104.04 -0.65 -2.04 16 16 C -0.17 -2.21 9.89 -39.46 -0.39 -2.60 16 17 C 0.20 2.50 6.76 -83.65 -0.57 1.94 16 18 N -0.88 -7.94 9.11 32.46 0.30 -7.64 16 19 C -0.18 -2.50 9.88 -39.47 -0.39 -2.89 16 20 C -0.05 -0.88 8.53 -39.29 -0.34 -1.21 16 21 C 0.05 0.73 5.29 -83.26 -0.44 0.29 16 22 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 23 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 24 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 25 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 26 H 0.06 1.26 5.58 -51.92 -0.29 0.97 16 27 H 0.03 0.58 8.06 -51.93 -0.42 0.16 16 28 H 0.07 1.19 7.85 -51.93 -0.41 0.78 16 29 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 30 H 0.08 0.90 7.60 -51.93 -0.39 0.50 16 31 H 0.08 0.78 8.14 -51.92 -0.42 0.35 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.39 2.75 8.85 -40.82 -0.36 2.39 16 35 H 0.40 2.92 8.85 -40.82 -0.36 2.56 16 36 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.13 2.13 7.18 -52.49 -0.38 1.75 16 LS Contribution 299.55 15.07 4.51 4.51 Total: -1.00 -32.78 299.55 -9.11 -41.89 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.50 Total: 2.83 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: -3.67 Total: -22.72 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.21 Total: -44.08 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.67 Total: 17.56 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.78 -9.11 -41.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578655.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.909 kcal (2) G-P(sol) polarization free energy of solvation -32.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds