Wall clock time and date at job start Mon Mar 30 2020 05:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86801 * 119.99708 * 2 1 4 4 H 1.48509 * 109.46526 * 269.99443 * 3 2 1 5 5 H 1.48492 * 109.47450 * 29.99383 * 3 2 1 6 6 H 1.48495 * 109.46982 * 149.99899 * 3 2 1 7 7 C 1.37877 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00211 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99754 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47218 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47287 * 180.02562 * 10 9 7 12 12 N 1.46895 * 109.47106 * 179.97438 * 11 10 9 13 13 C 1.47909 * 110.99927 * 170.23349 * 12 11 10 14 14 C 1.54581 * 102.63557 * 94.42143 * 13 12 11 15 15 C 1.51599 * 102.95771 * 25.34015 * 14 13 12 16 16 C 1.37923 * 131.46519 * 163.26671 * 15 14 13 17 17 C 1.38869 * 120.02117 * 181.09341 * 16 15 14 18 18 N 1.40011 * 120.13230 * 180.23908 * 17 16 15 19 19 C 1.38874 * 119.73412 * 0.26095 * 17 16 15 20 20 C 1.37887 * 120.18181 * 359.82526 * 19 17 16 21 21 C 1.38919 * 107.97886 * 344.49694 * 15 14 13 22 22 H 0.96996 * 120.00129 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.46692 * 60.00455 * 9 7 2 24 24 H 1.08998 * 109.47338 * 300.00568 * 9 7 2 25 25 H 1.09002 * 109.47138 * 59.99653 * 10 9 7 26 26 H 1.09008 * 109.47056 * 300.00396 * 10 9 7 27 27 H 1.08997 * 109.46817 * 59.99920 * 11 10 9 28 28 H 1.08998 * 109.47144 * 300.00075 * 11 10 9 29 29 H 1.09008 * 110.77386 * 212.70933 * 13 12 11 30 30 H 1.09003 * 110.77790 * 336.13493 * 13 12 11 31 31 H 1.09007 * 110.72975 * 143.91734 * 14 13 12 32 32 H 1.08993 * 110.73082 * 267.03815 * 14 13 12 33 33 H 1.08002 * 119.99266 * 1.37686 * 16 15 14 34 34 H 0.96993 * 119.99981 * 359.97438 * 18 17 16 35 35 H 0.97003 * 119.99672 * 180.02562 * 18 17 16 36 36 H 1.08000 * 119.90866 * 179.85431 * 19 17 16 37 37 H 1.07999 * 119.85557 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0022 12 7 6.0413 -4.0214 0.0027 13 6 7.5012 -4.0675 -0.2303 14 6 8.0718 -4.1089 1.2057 15 6 6.9356 -4.7153 2.0056 16 6 6.9058 -5.2887 3.2596 17 6 5.7158 -5.7981 3.7625 18 7 5.6819 -6.3762 5.0372 19 6 4.5597 -5.7321 2.9959 20 6 4.5914 -5.1601 1.7417 21 6 5.7829 -4.6460 1.2333 22 1 -0.4850 0.8400 -0.0004 23 1 3.8745 -0.6801 0.8912 24 1 3.8753 -0.6803 -0.8888 25 1 3.6586 -3.1501 -0.8892 26 1 3.6579 -3.1506 0.8908 27 1 5.9142 -2.1229 0.8927 28 1 5.9157 -2.1223 -0.8872 29 1 7.7765 -4.9665 -0.7819 30 1 7.8376 -3.1728 -0.7544 31 1 8.9590 -4.7407 1.2504 32 1 8.2977 -3.1033 1.5603 33 1 7.8072 -5.3376 3.8524 34 1 6.4906 -6.4219 5.5707 35 1 4.8496 -6.7318 5.3865 36 1 3.6333 -6.1295 3.3833 37 1 3.6891 -5.1112 1.1501 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578655.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:45 Heat of formation + Delta-G solvation = 7.824373 kcal Electronic energy + Delta-G solvation = -17435.099381 eV Core-core repulsion = 14789.758803 eV Total energy + Delta-G solvation = -2645.340578 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.63510 -38.49019 -36.13053 -34.42808 -34.06156 -32.41179 -29.96753 -28.93564 -27.87704 -24.57629 -23.90597 -22.31626 -21.78145 -21.41067 -18.92768 -17.86121 -17.47187 -17.16436 -16.52282 -16.27715 -15.78058 -15.59008 -14.92983 -14.53613 -14.39953 -14.06013 -13.93010 -13.73790 -13.60806 -13.25811 -12.93889 -12.69307 -12.52150 -12.28556 -11.82192 -11.70693 -11.64540 -11.42856 -11.32925 -11.08357 -10.75744 -9.72546 -9.56762 -8.29077 -8.04483 -6.33325 0.48628 0.64197 1.35363 1.37824 1.50090 2.36782 2.75881 2.94126 3.05957 3.10677 3.70580 3.92637 4.12398 4.17241 4.23575 4.31062 4.44151 4.54972 4.66815 4.70766 4.78456 4.85322 4.91113 4.97785 5.07997 5.08499 5.18320 5.35789 5.39798 5.51078 5.59399 5.64695 5.68250 5.80651 6.16112 6.30413 6.39043 6.67495 6.74229 7.07629 7.30989 8.88140 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024373 B = 0.005566 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.558732 B = 5029.056714 C = 5672.951506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.954 3.046 4 H -0.263 1.263 5 H -0.283 1.283 6 H -0.248 1.248 7 C -0.532 4.532 8 H 0.027 0.973 9 C -0.007 4.007 10 C -0.093 4.093 11 C 0.068 3.932 12 N -0.505 5.505 13 C 0.048 3.952 14 C -0.103 4.103 15 C -0.101 4.101 16 C -0.176 4.176 17 C 0.204 3.796 18 N -0.868 5.868 19 C -0.195 4.195 20 C -0.078 4.078 21 C 0.012 3.988 22 H 0.266 0.734 23 H 0.015 0.985 24 H 0.022 0.978 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.030 0.970 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.141 0.859 34 H 0.407 0.593 35 H 0.406 0.594 36 H 0.133 0.867 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.747 -10.705 7.433 23.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.194 4.194 3 Si 0.777 3.223 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.171 1.171 7 C -0.570 4.570 8 H 0.046 0.954 9 C -0.045 4.045 10 C -0.131 4.131 11 C -0.057 4.057 12 N -0.224 5.224 13 C -0.079 4.079 14 C -0.141 4.141 15 C -0.104 4.104 16 C -0.199 4.199 17 C 0.099 3.901 18 N -0.410 5.410 19 C -0.219 4.219 20 C -0.099 4.099 21 C -0.085 4.085 22 H 0.075 0.925 23 H 0.034 0.966 24 H 0.041 0.959 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.106 0.894 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.103 0.897 33 H 0.158 0.842 34 H 0.237 0.763 35 H 0.235 0.765 36 H 0.151 0.849 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 19.344 -10.818 6.945 23.226 hybrid contribution -0.395 0.857 0.795 1.234 sum 18.949 -9.961 7.740 22.764 Atomic orbital electron populations 1.70082 1.08363 1.28181 1.52778 1.26061 0.95658 1.03644 0.94014 0.85603 0.79399 0.77926 0.79397 1.18764 1.20857 1.17117 1.21479 0.92156 0.93032 1.50363 0.95433 1.19465 0.93919 0.94743 0.96364 1.21380 0.94042 0.97020 1.00619 1.22194 0.95316 0.87445 1.00785 1.60335 1.16227 1.15724 1.30094 1.23274 0.84079 1.04106 0.96426 1.21718 0.96781 1.01524 0.94094 1.21073 0.96399 0.98764 0.94130 1.19974 0.97578 1.06131 0.96236 1.17679 0.92993 0.92737 0.86727 1.42370 1.15113 1.68403 1.15072 1.20516 0.98305 1.07870 0.95171 1.20469 0.96388 0.97249 0.95762 1.19479 0.94805 1.03118 0.91096 0.92482 0.96622 0.95935 0.93485 0.93616 0.95145 0.89424 0.88710 0.88406 0.87461 0.89707 0.84171 0.76319 0.76503 0.84907 0.87519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.66 13.96 21.45 0.30 -61.36 16 2 C 0.00 0.15 5.47 84.65 0.46 0.62 16 3 Si 0.95 45.46 27.47 68.60 1.88 47.34 16 4 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 6 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 7 C -0.53 -32.30 9.66 25.60 0.25 -32.06 16 8 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 9 C -0.01 -0.35 4.04 29.85 0.12 -0.23 16 10 C -0.09 -4.00 5.02 30.59 0.15 -3.84 16 11 C 0.07 2.34 4.75 86.30 0.41 2.75 16 12 N -0.51 -15.84 5.07 -688.39 -3.49 -19.33 16 13 C 0.05 1.06 7.00 86.65 0.61 1.67 16 14 C -0.10 -2.09 6.96 30.67 0.21 -1.88 16 15 C -0.10 -2.67 6.23 -19.49 -0.12 -2.79 16 16 C -0.18 -4.12 9.89 22.35 0.22 -3.90 16 17 C 0.20 4.81 6.76 38.14 0.26 5.07 16 18 N -0.87 -13.46 9.11 -51.21 -0.47 -13.92 16 19 C -0.20 -5.47 9.88 22.34 0.22 -5.25 16 20 C -0.08 -2.61 8.53 22.46 0.19 -2.42 16 21 C 0.01 0.39 5.29 38.20 0.20 0.59 16 22 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 23 H 0.02 0.76 7.20 -2.39 -0.02 0.74 16 24 H 0.02 1.05 7.57 -2.39 -0.02 1.04 16 25 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.05 2.06 5.58 -2.38 -0.01 2.05 16 27 H 0.03 1.04 8.06 -2.39 -0.02 1.02 16 28 H 0.09 2.70 7.85 -2.39 -0.02 2.68 16 29 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.10 1.84 7.60 -2.39 -0.02 1.82 16 31 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 34 H 0.41 4.40 8.85 -92.71 -0.82 3.58 16 35 H 0.41 5.09 8.85 -92.71 -0.82 4.27 16 36 H 0.13 3.25 8.06 -2.91 -0.02 3.23 16 37 H 0.11 3.88 7.18 -2.91 -0.02 3.86 16 Total: -1.00 -72.74 299.55 0.79 -71.95 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -0.62 Total: 16.99 kcal Atomic # 6 Polarization: -44.85 SS G_CDS: 3.19 Total: -41.67 kcal Atomic # 7 Polarization: -90.95 SS G_CDS: -3.66 Total: -94.61 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.34 kcal Total: -72.74 0.79 -71.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578655.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.772 kcal (2) G-P(sol) polarization free energy of solvation -72.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds