Wall clock time and date at job start Mon Mar 30 2020 05:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00098 * 2 1 4 4 H 1.48496 * 109.47249 * 270.00003 * 3 2 1 5 5 H 1.48505 * 109.47176 * 29.99940 * 3 2 1 6 6 H 1.48506 * 109.46945 * 149.99735 * 3 2 1 7 7 C 1.37876 * 119.99644 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99838 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00200 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47313 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47132 * 180.02562 * 10 9 7 12 12 N 1.46899 * 109.47126 * 180.02562 * 11 10 9 13 13 C 1.47898 * 111.00104 * 290.12520 * 12 11 10 14 14 C 1.54593 * 102.63571 * 265.46170 * 13 12 11 15 15 C 1.51595 * 102.83578 * 334.41087 * 14 13 12 16 16 C 1.37998 * 131.47713 * 196.26902 * 15 14 13 17 17 C 1.38162 * 120.18144 * 179.60283 * 16 15 14 18 18 C 1.38991 * 119.80344 * 359.92396 * 17 16 15 19 19 N 1.39675 * 119.94167 * 180.12674 * 18 17 16 20 20 C 1.38563 * 120.10924 * 0.40408 * 18 17 16 21 21 C 1.39042 * 107.92795 * 16.03777 * 15 14 13 22 22 H 0.97005 * 120.00173 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.47494 * 59.99631 * 9 7 2 24 24 H 1.09000 * 109.47115 * 299.99938 * 9 7 2 25 25 H 1.09003 * 109.46954 * 59.99530 * 10 9 7 26 26 H 1.08996 * 109.46727 * 299.99901 * 10 9 7 27 27 H 1.09003 * 109.47614 * 59.99898 * 11 10 9 28 28 H 1.09005 * 109.47312 * 299.99390 * 11 10 9 29 29 H 1.08997 * 110.77879 * 147.17348 * 13 12 11 30 30 H 1.09007 * 110.93839 * 23.81939 * 13 12 11 31 31 H 1.08998 * 110.73976 * 216.07159 * 14 13 12 32 32 H 1.09004 * 110.73998 * 92.74517 * 14 13 12 33 33 H 1.08002 * 119.90824 * 359.62362 * 16 15 14 34 34 H 1.07997 * 120.09286 * 179.97438 * 17 16 15 35 35 H 0.96999 * 120.00193 * 0.02562 * 19 18 17 36 36 H 0.97005 * 119.99698 * 179.97438 * 19 18 17 37 37 H 1.07998 * 119.93299 * 179.76187 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4801 -4.9871 -0.0001 12 7 2.4346 -6.1037 0.0005 13 6 3.1411 -6.1978 -1.2954 14 6 2.2909 -7.2310 -2.0698 15 6 1.6511 -8.0407 -0.9593 16 6 1.0259 -9.2709 -0.9688 17 6 0.5240 -9.8040 0.2028 18 6 0.6517 -9.0982 1.3933 19 7 0.1477 -9.6356 2.5799 20 6 1.2730 -7.8597 1.4039 21 6 1.7815 -7.3222 0.2239 22 1 -0.4850 0.8401 -0.0004 23 1 0.6245 -2.5571 -0.8896 24 1 0.6239 -2.5567 0.8903 25 1 2.8718 -3.6044 0.8905 26 1 2.8717 -3.6044 -0.8894 27 1 0.8537 -5.0446 -0.8903 28 1 0.8532 -5.0451 0.8897 29 1 4.1589 -6.5617 -1.1554 30 1 3.1430 -5.2362 -1.8088 31 1 2.9242 -7.8628 -2.6926 32 1 1.5307 -6.7324 -2.6712 33 1 0.9290 -9.8186 -1.8946 34 1 0.0346 -10.7667 0.1937 35 1 -0.2907 -10.5009 2.5728 36 1 0.2367 -9.1438 3.4114 37 1 1.3673 -7.3120 2.3299 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578656.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:50 Heat of formation + Delta-G solvation = 24.299846 kcal Electronic energy + Delta-G solvation = -17149.617824 eV Core-core repulsion = 14504.991676 eV Total energy + Delta-G solvation = -2644.626148 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.56628 -37.53919 -34.52437 -33.34377 -31.81510 -31.04449 -29.02587 -27.34224 -26.16195 -23.21777 -22.85911 -21.07683 -20.77278 -19.63458 -17.00421 -16.90111 -16.20908 -15.68550 -15.42922 -14.85945 -14.39471 -13.97325 -13.73658 -13.39594 -13.27392 -12.87995 -12.32890 -12.20569 -11.93010 -11.59801 -11.41455 -11.08558 -10.91973 -10.81076 -10.56107 -10.54794 -10.24536 -9.65477 -9.41967 -9.16786 -8.93960 -8.32144 -7.92380 -7.31689 -5.97409 -3.99537 1.51125 1.66242 3.33923 3.40012 3.43878 3.65274 3.87671 4.15141 4.48734 4.79723 4.98646 5.12251 5.24223 5.28601 5.38426 5.47367 5.73224 5.74913 5.83495 5.90159 5.93143 5.93453 6.18298 6.29029 6.37227 6.48832 6.60450 6.66753 6.75271 6.87019 7.14007 7.30619 7.37554 7.59541 7.70465 7.71054 7.84808 8.02854 8.45884 9.07597 9.64394 11.14053 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.036270 B = 0.004246 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.795339 B = 6593.367207 C = 7020.567191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.105 4.105 11 C 0.062 3.938 12 N -0.496 5.496 13 C 0.047 3.953 14 C -0.102 4.102 15 C -0.200 4.200 16 C -0.043 4.043 17 C -0.218 4.218 18 C 0.229 3.771 19 N -0.880 5.880 20 C -0.193 4.193 21 C 0.149 3.851 22 H 0.260 0.740 23 H 0.014 0.986 24 H 0.016 0.984 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.038 0.962 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.396 0.604 36 H 0.397 0.603 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.573 -19.876 0.080 19.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.143 4.143 11 C -0.063 4.063 12 N -0.212 5.212 13 C -0.080 4.080 14 C -0.140 4.140 15 C -0.204 4.204 16 C -0.062 4.062 17 C -0.241 4.241 18 C 0.124 3.876 19 N -0.419 5.419 20 C -0.218 4.218 21 C 0.051 3.949 22 H 0.070 0.930 23 H 0.033 0.967 24 H 0.034 0.966 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.224 0.776 36 H 0.225 0.775 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.819 -19.546 0.451 19.636 hybrid contribution -0.279 0.630 -0.224 0.725 sum 1.540 -18.916 0.227 18.980 Atomic orbital electron populations 1.69971 1.06066 1.26545 1.51014 1.25026 0.94836 0.99245 0.95381 0.86598 0.79881 0.83481 0.78071 1.20698 1.21253 1.19840 1.21243 0.93060 0.90986 1.50360 0.92635 1.19073 0.94006 0.91311 0.97185 1.21709 0.99189 0.92454 1.00983 1.22405 0.93147 0.89752 1.00977 1.60194 1.27003 1.01906 1.32123 1.23188 0.97703 0.99652 0.87463 1.21563 0.98913 0.96879 0.96619 1.20808 1.06391 0.97917 0.95310 1.20045 0.95377 0.93541 0.97273 1.20361 1.10324 1.01808 0.91634 1.17383 0.91869 0.91646 0.86689 1.42410 1.67525 1.24443 1.07537 1.19775 1.08217 0.96261 0.97522 1.19360 0.91621 0.91092 0.92792 0.93047 0.96741 0.96565 0.92483 0.93242 0.94351 0.90997 0.89867 0.89038 0.90412 0.90618 0.86574 0.86407 0.77598 0.77459 0.86084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.24 5.19 -26.73 -0.14 -2.37 16 11 C 0.06 1.14 4.75 -3.83 -0.02 1.12 16 12 N -0.50 -8.28 5.04 -169.04 -0.85 -9.13 16 13 C 0.05 0.67 6.71 -2.44 -0.02 0.66 16 14 C -0.10 -1.31 6.92 -26.61 -0.18 -1.50 16 15 C -0.20 -2.85 6.23 -103.97 -0.65 -3.50 16 16 C -0.04 -0.53 10.02 -39.70 -0.40 -0.93 16 17 C -0.22 -2.54 9.90 -39.33 -0.39 -2.93 16 18 C 0.23 2.80 6.74 -83.89 -0.57 2.23 16 19 N -0.88 -7.67 9.09 32.36 0.29 -7.38 16 20 C -0.19 -2.79 9.91 -39.08 -0.39 -3.17 16 21 C 0.15 2.35 5.53 -83.42 -0.46 1.89 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.05 1.01 6.59 -51.93 -0.34 0.67 16 27 H 0.04 0.72 8.03 -51.93 -0.42 0.30 16 28 H 0.07 1.36 8.06 -51.93 -0.42 0.94 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.09 1.33 6.27 -51.93 -0.33 1.00 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.40 2.56 8.84 -40.82 -0.36 2.20 16 36 H 0.40 2.98 8.84 -40.82 -0.36 2.62 16 37 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 305.42 15.07 4.60 4.60 Total: -1.00 -31.73 305.42 -9.57 -41.30 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -5.57 Total: 2.02 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -3.76 Total: -21.74 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 0.18 Total: -43.03 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.73 -9.57 -41.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578656.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.600 kcal (2) G-P(sol) polarization free energy of solvation -31.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds