Wall clock time and date at job start Mon Mar 30 2020 05:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00098 * 2 1 4 4 H 1.48496 * 109.47249 * 270.00003 * 3 2 1 5 5 H 1.48505 * 109.47176 * 29.99940 * 3 2 1 6 6 H 1.48506 * 109.46945 * 149.99735 * 3 2 1 7 7 C 1.37876 * 119.99644 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99838 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00200 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47313 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47132 * 180.02562 * 10 9 7 12 12 N 1.46899 * 109.47126 * 180.02562 * 11 10 9 13 13 C 1.47898 * 111.00104 * 290.12520 * 12 11 10 14 14 C 1.54593 * 102.63571 * 265.46170 * 13 12 11 15 15 C 1.51595 * 102.83578 * 334.41087 * 14 13 12 16 16 C 1.37998 * 131.47713 * 196.26902 * 15 14 13 17 17 C 1.38162 * 120.18144 * 179.60283 * 16 15 14 18 18 C 1.38991 * 119.80344 * 359.92396 * 17 16 15 19 19 N 1.39675 * 119.94167 * 180.12674 * 18 17 16 20 20 C 1.38563 * 120.10924 * 0.40408 * 18 17 16 21 21 C 1.39042 * 107.92795 * 16.03777 * 15 14 13 22 22 H 0.97005 * 120.00173 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.47494 * 59.99631 * 9 7 2 24 24 H 1.09000 * 109.47115 * 299.99938 * 9 7 2 25 25 H 1.09003 * 109.46954 * 59.99530 * 10 9 7 26 26 H 1.08996 * 109.46727 * 299.99901 * 10 9 7 27 27 H 1.09003 * 109.47614 * 59.99898 * 11 10 9 28 28 H 1.09005 * 109.47312 * 299.99390 * 11 10 9 29 29 H 1.08997 * 110.77879 * 147.17348 * 13 12 11 30 30 H 1.09007 * 110.93839 * 23.81939 * 13 12 11 31 31 H 1.08998 * 110.73976 * 216.07159 * 14 13 12 32 32 H 1.09004 * 110.73998 * 92.74517 * 14 13 12 33 33 H 1.08002 * 119.90824 * 359.62362 * 16 15 14 34 34 H 1.07997 * 120.09286 * 179.97438 * 17 16 15 35 35 H 0.96999 * 120.00193 * 0.02562 * 19 18 17 36 36 H 0.97005 * 119.99698 * 179.97438 * 19 18 17 37 37 H 1.07998 * 119.93299 * 179.76187 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4801 -4.9871 -0.0001 12 7 2.4346 -6.1037 0.0005 13 6 3.1411 -6.1978 -1.2954 14 6 2.2909 -7.2310 -2.0698 15 6 1.6511 -8.0407 -0.9593 16 6 1.0259 -9.2709 -0.9688 17 6 0.5240 -9.8040 0.2028 18 6 0.6517 -9.0982 1.3933 19 7 0.1477 -9.6356 2.5799 20 6 1.2730 -7.8597 1.4039 21 6 1.7815 -7.3222 0.2239 22 1 -0.4850 0.8401 -0.0004 23 1 0.6245 -2.5571 -0.8896 24 1 0.6239 -2.5567 0.8903 25 1 2.8718 -3.6044 0.8905 26 1 2.8717 -3.6044 -0.8894 27 1 0.8537 -5.0446 -0.8903 28 1 0.8532 -5.0451 0.8897 29 1 4.1589 -6.5617 -1.1554 30 1 3.1430 -5.2362 -1.8088 31 1 2.9242 -7.8628 -2.6926 32 1 1.5307 -6.7324 -2.6712 33 1 0.9290 -9.8186 -1.8946 34 1 0.0346 -10.7667 0.1937 35 1 -0.2907 -10.5009 2.5728 36 1 0.2367 -9.1438 3.4114 37 1 1.3673 -7.3120 2.3299 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578656.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:50 Heat of formation + Delta-G solvation = 4.084426 kcal Electronic energy + Delta-G solvation = -17150.494430 eV Core-core repulsion = 14504.991676 eV Total energy + Delta-G solvation = -2645.502755 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.65837 -38.59428 -36.16017 -34.79837 -33.44479 -32.21174 -30.39766 -28.34181 -27.92229 -24.96056 -23.94344 -22.46327 -21.88287 -21.17095 -18.54696 -17.86873 -17.81886 -16.79421 -16.59635 -16.50586 -15.85334 -15.43819 -14.93503 -14.61590 -14.32296 -14.17771 -13.85483 -13.72107 -13.44647 -13.16798 -12.75126 -12.61732 -12.43298 -12.37136 -12.16223 -11.90920 -11.53526 -11.47745 -11.30167 -11.02676 -10.55277 -10.21043 -9.05146 -8.26073 -8.19909 -6.31374 0.47203 0.67100 1.40549 1.42197 1.53576 2.41095 2.64217 2.90449 3.13153 3.19308 3.76198 3.91307 4.11232 4.14833 4.20719 4.31586 4.39011 4.54971 4.62756 4.72568 4.77889 4.86221 4.93372 4.99421 5.07792 5.16138 5.21642 5.38911 5.50164 5.51947 5.63779 5.71487 5.77451 5.84368 6.05035 6.24414 6.33416 6.63775 6.85014 7.04736 7.37960 8.92077 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.036270 B = 0.004246 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.795339 B = 6593.367207 C = 7020.567191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.542 4.542 8 H 0.060 0.940 9 C 0.027 3.973 10 C -0.088 4.088 11 C 0.077 3.923 12 N -0.506 5.506 13 C 0.042 3.958 14 C -0.095 4.095 15 C -0.215 4.215 16 C -0.044 4.044 17 C -0.215 4.215 18 C 0.228 3.772 19 N -0.867 5.867 20 C -0.214 4.214 21 C 0.117 3.883 22 H 0.264 0.736 23 H -0.008 1.008 24 H -0.010 1.010 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.032 0.968 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.143 0.857 34 H 0.148 0.852 35 H 0.410 0.590 36 H 0.404 0.596 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.250 -21.238 -0.301 21.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.580 4.580 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.126 4.126 11 C -0.048 4.048 12 N -0.223 5.223 13 C -0.084 4.084 14 C -0.133 4.133 15 C -0.219 4.219 16 C -0.064 4.064 17 C -0.238 4.238 18 C 0.122 3.878 19 N -0.407 5.407 20 C -0.239 4.239 21 C 0.020 3.980 22 H 0.073 0.927 23 H 0.010 0.990 24 H 0.008 0.992 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.114 0.886 30 H 0.103 0.897 31 H 0.121 0.879 32 H 0.089 0.911 33 H 0.161 0.839 34 H 0.166 0.834 35 H 0.240 0.760 36 H 0.233 0.767 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.494 -20.951 0.091 21.099 hybrid contribution -0.555 0.939 -0.056 1.092 sum 1.939 -20.013 0.035 20.106 Atomic orbital electron populations 1.70105 1.07856 1.27799 1.51696 1.25995 0.95768 1.03410 0.94640 0.85424 0.78639 0.78277 0.78575 1.19608 1.20704 1.18751 1.21667 0.93559 0.92234 1.50572 0.92136 1.18960 0.94346 0.93039 0.94767 1.21431 0.97992 0.92111 1.01047 1.22042 0.92998 0.89640 1.00108 1.60137 1.26648 1.01858 1.33640 1.23283 0.98420 0.99980 0.86755 1.21532 0.98826 0.96576 0.96372 1.21036 1.07152 0.98780 0.94972 1.20409 0.94312 0.92915 0.98721 1.20758 1.09361 1.02663 0.90987 1.17505 0.91220 0.90968 0.88129 1.42393 1.66564 1.24916 1.06816 1.19924 1.09342 0.97491 0.97116 1.19541 0.93427 0.91001 0.94068 0.92750 0.98983 0.99173 0.92966 0.92398 0.95009 0.92140 0.88599 0.89712 0.87947 0.91063 0.83920 0.83423 0.75981 0.76743 0.86786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.89 13.29 21.45 0.28 -57.60 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 3 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.54 -31.68 9.11 25.60 0.23 -31.44 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.03 1.45 4.97 29.85 0.15 1.60 16 10 C -0.09 -3.84 5.19 30.59 0.16 -3.68 16 11 C 0.08 2.98 4.75 86.30 0.41 3.39 16 12 N -0.51 -17.10 5.04 -688.72 -3.47 -20.57 16 13 C 0.04 1.19 6.71 86.65 0.58 1.77 16 14 C -0.10 -2.34 6.92 30.68 0.21 -2.13 16 15 C -0.21 -5.87 6.23 -19.44 -0.12 -5.99 16 16 C -0.04 -0.99 10.02 22.19 0.22 -0.77 16 17 C -0.21 -4.40 9.90 22.43 0.22 -4.18 16 18 C 0.23 5.20 6.74 38.15 0.26 5.46 16 19 N -0.87 -13.34 9.09 -51.53 -0.47 -13.81 16 20 C -0.21 -6.16 9.91 22.60 0.22 -5.93 16 21 C 0.12 3.67 5.53 38.27 0.21 3.89 16 22 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 23 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 24 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 25 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.06 2.41 6.59 -2.39 -0.02 2.39 16 27 H 0.03 1.24 8.03 -2.39 -0.02 1.22 16 28 H 0.06 2.42 8.06 -2.38 -0.02 2.40 16 29 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.08 2.46 6.27 -2.38 -0.01 2.44 16 31 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 34 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 35 H 0.41 4.14 8.84 -92.71 -0.82 3.32 16 36 H 0.40 5.45 8.84 -92.70 -0.82 4.63 16 37 H 0.11 3.29 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -68.82 305.42 1.03 -67.79 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -0.57 Total: 14.85 kcal Atomic # 6 Polarization: -40.81 SS G_CDS: 3.22 Total: -37.59 kcal Atomic # 7 Polarization: -88.32 SS G_CDS: -3.65 Total: -91.98 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -68.82 1.03 -67.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578656.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.879 kcal (2) G-P(sol) polarization free energy of solvation -68.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds