Wall clock time and date at job start Mon Mar 30 2020 05:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46929 * 2 1 4 4 H 1.09006 * 109.46814 * 304.99902 * 3 2 1 5 5 C 1.53001 * 109.47392 * 64.99456 * 3 2 1 6 6 C 1.50700 * 109.47377 * 185.00181 * 3 2 1 7 7 O 1.20764 * 119.99493 * 334.99132 * 6 3 2 8 8 C 1.50692 * 120.00305 * 155.00002 * 6 3 2 9 9 H 1.09003 * 109.47562 * 34.99748 * 8 6 3 10 10 C 1.50699 * 109.47137 * 274.99979 * 8 6 3 11 11 H 1.08007 * 119.99940 * 325.13880 * 10 8 6 12 12 C 1.37875 * 120.00517 * 145.14485 * 10 8 6 13 13 N 1.31517 * 119.99660 * 5.64742 * 12 10 8 14 14 Si 1.86801 * 120.00258 * 185.64548 * 12 10 8 15 15 H 1.48502 * 109.46766 * 59.99848 * 14 12 10 16 16 H 1.48497 * 109.47176 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46982 * 300.00079 * 14 12 10 18 18 C 1.50698 * 109.47474 * 154.99893 * 8 6 3 19 19 C 1.38234 * 120.00003 * 66.58428 * 18 8 6 20 20 C 1.38240 * 119.99691 * 179.79121 * 19 18 8 21 21 C 1.38233 * 120.00172 * 0.44344 * 20 19 18 22 22 C 1.38231 * 119.99770 * 359.81158 * 21 20 19 23 23 C 1.38233 * 120.00270 * 359.97438 * 22 21 20 24 24 H 1.08997 * 109.47503 * 300.00123 * 1 2 3 25 25 H 1.08999 * 109.47608 * 60.00378 * 1 2 3 26 26 H 1.09006 * 109.47196 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47503 * 239.99877 * 2 1 3 28 28 H 1.09003 * 109.47386 * 119.99179 * 2 1 3 29 29 H 1.09006 * 109.46777 * 60.00423 * 5 3 2 30 30 H 1.08998 * 109.47322 * 180.02562 * 5 3 2 31 31 H 1.08993 * 109.47426 * 300.00590 * 5 3 2 32 32 H 0.97002 * 119.99492 * 180.02562 * 13 12 10 33 33 H 1.08004 * 120.00138 * 0.02562 * 19 18 8 34 34 H 1.08006 * 119.99722 * 180.27687 * 20 19 18 35 35 H 1.08001 * 119.99797 * 179.83494 * 21 20 19 36 36 H 1.08001 * 119.99876 * 180.02562 * 22 21 20 37 37 H 1.08003 * 119.99926 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8419 5 6 1.6350 2.1267 1.3073 6 6 3.5418 1.4445 -0.1239 7 8 4.1788 0.4850 0.2394 8 6 4.2488 2.6437 -0.7009 9 1 3.7227 3.5520 -0.4068 10 6 4.2694 2.5395 -2.2041 11 1 4.3637 1.5732 -2.6772 12 6 4.1679 3.6777 -2.9756 13 7 4.1651 4.8618 -2.4033 14 14 4.0345 3.5380 -4.8336 15 1 2.8216 2.7568 -5.1853 16 1 3.9373 4.8960 -5.4264 17 1 5.2381 2.8499 -5.3658 18 6 5.6625 2.6916 -0.1812 19 6 6.5659 1.7103 -0.5443 20 6 7.8640 1.7566 -0.0711 21 6 8.2561 2.7791 0.7725 22 6 7.3512 3.7575 1.1397 23 6 6.0544 3.7136 0.6630 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 2.0697 1.5877 2.1492 30 1 1.9979 3.1545 1.3071 31 1 0.5488 2.1253 1.3969 32 1 4.0933 5.6626 -2.9460 33 1 6.2587 0.9095 -1.2006 34 1 8.5711 0.9924 -0.3583 35 1 9.2695 2.8138 1.1443 36 1 7.6576 4.5566 1.7984 37 1 5.3473 4.4778 0.9502 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055026375.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:57 Heat of formation + Delta-G solvation = -40.157333 kcal Electronic energy + Delta-G solvation = -17961.314997 eV Core-core repulsion = 15281.601024 eV Total energy + Delta-G solvation = -2679.713972 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.25019 -37.75206 -34.84171 -33.61425 -31.11369 -29.93641 -29.51867 -27.42985 -24.89228 -23.88408 -21.64463 -21.51844 -19.89665 -18.23482 -16.60628 -15.86455 -15.49102 -14.90746 -14.60321 -14.25979 -13.91073 -13.66923 -13.20363 -12.85562 -12.54966 -12.28587 -12.25272 -11.79333 -11.67429 -11.48261 -11.31094 -11.24016 -11.00038 -10.94300 -10.43593 -10.29939 -10.25709 -10.22454 -9.86646 -9.41658 -8.75302 -8.34424 -7.94150 -7.55334 -6.25258 -4.30651 2.36629 2.40348 3.05191 3.23360 3.27351 3.32303 4.28399 4.72626 5.03572 5.11846 5.24506 5.37383 5.69693 5.71502 5.78745 5.80493 5.84497 5.87511 5.95926 6.19773 6.26046 6.28309 6.31619 6.33811 6.48055 6.58465 6.66768 6.72400 6.76154 6.87904 7.02630 7.19226 7.36922 7.46421 7.64205 7.78979 7.97512 8.11755 8.59752 8.78449 9.33532 10.83274 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.013567 B = 0.010735 C = 0.007102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.321490 B = 2607.669621 C = 3941.557191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C -0.139 4.139 4 H 0.100 0.900 5 C -0.137 4.137 6 C 0.377 3.623 7 O -0.483 6.483 8 C 0.026 3.974 9 H 0.086 0.914 10 C -0.509 4.509 11 H 0.061 0.939 12 C 0.074 3.926 13 N -0.876 5.876 14 Si 0.898 3.102 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.274 1.274 18 C -0.023 4.023 19 C -0.084 4.084 20 C -0.136 4.136 21 C -0.149 4.149 22 C -0.134 4.134 23 C -0.120 4.120 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.267 0.733 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.683 -3.123 4.948 6.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.147 4.147 3 C -0.158 4.158 4 H 0.118 0.882 5 C -0.194 4.194 6 C 0.254 3.746 7 O -0.359 6.359 8 C 0.006 3.994 9 H 0.104 0.896 10 C -0.546 4.546 11 H 0.079 0.921 12 C -0.131 4.131 13 N -0.512 5.512 14 Si 0.725 3.275 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.024 4.024 19 C -0.102 4.102 20 C -0.155 4.155 21 C -0.167 4.167 22 C -0.152 4.152 23 C -0.139 4.139 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.132 0.868 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.366 -3.414 5.101 6.579 hybrid contribution 0.011 0.231 -1.191 1.213 sum -2.355 -3.184 3.910 5.565 Atomic orbital electron populations 1.21821 0.96200 1.01010 1.01775 1.21376 0.95038 0.95887 1.02417 1.21685 0.96380 0.97509 1.00268 0.88193 1.21680 1.01175 1.00753 0.95776 1.25111 0.90257 0.88420 0.70764 1.90242 1.69543 1.36524 1.39572 1.18525 0.89268 0.94915 0.96648 0.89564 1.20548 1.52678 0.93686 0.87733 0.92114 1.24961 0.93842 0.95157 0.99136 1.69919 1.47639 0.97502 1.36114 0.86550 0.79031 0.77390 0.84576 1.19855 1.21020 1.19941 1.20297 0.97823 0.92528 0.91738 1.20913 0.92328 0.98473 0.98514 1.20992 0.96416 0.98642 0.99404 1.20802 0.98629 0.96470 1.00835 1.20907 0.94236 0.98760 1.01263 1.21019 0.95871 0.98738 0.98230 0.92710 0.92692 0.93236 0.92016 0.91845 0.92933 0.91918 0.92055 0.92346 0.86793 0.87603 0.87744 0.87590 0.87003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.67 37.15 0.36 -1.57 16 2 C -0.11 -1.75 4.85 -26.73 -0.13 -1.88 16 3 C -0.14 -2.48 2.65 -91.77 -0.24 -2.72 16 4 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 5 C -0.14 -2.08 8.93 37.16 0.33 -1.75 16 6 C 0.38 8.16 5.35 -29.04 -0.16 8.01 16 7 O -0.48 -11.26 14.96 6.00 0.09 -11.17 16 8 C 0.03 0.61 2.29 -94.08 -0.22 0.39 16 9 H 0.09 2.14 7.14 -51.93 -0.37 1.77 16 10 C -0.51 -13.13 7.64 -34.44 -0.26 -13.40 16 11 H 0.06 1.59 7.82 -52.48 -0.41 1.18 16 12 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 13 N -0.88 -23.50 12.85 55.43 0.71 -22.78 16 14 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 15 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 C -0.02 -0.55 4.57 -104.63 -0.48 -1.03 16 19 C -0.08 -1.92 8.03 -39.58 -0.32 -2.24 16 20 C -0.14 -2.73 10.05 -39.58 -0.40 -3.13 16 21 C -0.15 -2.79 10.05 -39.59 -0.40 -3.19 16 22 C -0.13 -2.58 10.05 -39.59 -0.40 -2.98 16 23 C -0.12 -2.62 9.67 -39.58 -0.38 -3.01 16 24 H 0.05 0.64 6.56 -51.93 -0.34 0.30 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.06 1.03 8.03 -51.93 -0.42 0.61 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.78 6.56 -51.93 -0.34 0.44 16 32 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.11 2.67 7.65 -52.48 -0.40 2.27 16 34 H 0.11 1.82 8.06 -52.48 -0.42 1.40 16 35 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.11 2.33 7.96 -52.48 -0.42 1.91 16 LS Contribution 310.98 15.07 4.69 4.69 Total: -1.00 -27.93 310.98 -7.96 -35.89 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -5.64 Total: 4.75 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: -2.78 Total: -26.66 kcal Atomic # 7 Polarization: -23.50 SS G_CDS: 0.71 Total: -22.78 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.09 Total: -11.17 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.93 -7.96 -35.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055026375.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.266 kcal (2) G-P(sol) polarization free energy of solvation -27.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds