Wall clock time and date at job start Mon Mar 30 2020 05:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46929 * 2 1 4 4 H 1.09006 * 109.46814 * 304.99902 * 3 2 1 5 5 C 1.53001 * 109.47392 * 64.99456 * 3 2 1 6 6 C 1.50700 * 109.47377 * 185.00181 * 3 2 1 7 7 O 1.20764 * 119.99493 * 334.99132 * 6 3 2 8 8 C 1.50692 * 120.00305 * 155.00002 * 6 3 2 9 9 H 1.09003 * 109.47562 * 34.99748 * 8 6 3 10 10 C 1.50699 * 109.47137 * 274.99979 * 8 6 3 11 11 H 1.08007 * 119.99940 * 325.13880 * 10 8 6 12 12 C 1.37875 * 120.00517 * 145.14485 * 10 8 6 13 13 N 1.31517 * 119.99660 * 5.64742 * 12 10 8 14 14 Si 1.86801 * 120.00258 * 185.64548 * 12 10 8 15 15 H 1.48502 * 109.46766 * 59.99848 * 14 12 10 16 16 H 1.48497 * 109.47176 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46982 * 300.00079 * 14 12 10 18 18 C 1.50698 * 109.47474 * 154.99893 * 8 6 3 19 19 C 1.38234 * 120.00003 * 66.58428 * 18 8 6 20 20 C 1.38240 * 119.99691 * 179.79121 * 19 18 8 21 21 C 1.38233 * 120.00172 * 0.44344 * 20 19 18 22 22 C 1.38231 * 119.99770 * 359.81158 * 21 20 19 23 23 C 1.38233 * 120.00270 * 359.97438 * 22 21 20 24 24 H 1.08997 * 109.47503 * 300.00123 * 1 2 3 25 25 H 1.08999 * 109.47608 * 60.00378 * 1 2 3 26 26 H 1.09006 * 109.47196 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47503 * 239.99877 * 2 1 3 28 28 H 1.09003 * 109.47386 * 119.99179 * 2 1 3 29 29 H 1.09006 * 109.46777 * 60.00423 * 5 3 2 30 30 H 1.08998 * 109.47322 * 180.02562 * 5 3 2 31 31 H 1.08993 * 109.47426 * 300.00590 * 5 3 2 32 32 H 0.97002 * 119.99492 * 180.02562 * 13 12 10 33 33 H 1.08004 * 120.00138 * 0.02562 * 19 18 8 34 34 H 1.08006 * 119.99722 * 180.27687 * 20 19 18 35 35 H 1.08001 * 119.99797 * 179.83494 * 21 20 19 36 36 H 1.08001 * 119.99876 * 180.02562 * 22 21 20 37 37 H 1.08003 * 119.99926 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8419 5 6 1.6350 2.1267 1.3073 6 6 3.5418 1.4445 -0.1239 7 8 4.1788 0.4850 0.2394 8 6 4.2488 2.6437 -0.7009 9 1 3.7227 3.5520 -0.4068 10 6 4.2694 2.5395 -2.2041 11 1 4.3637 1.5732 -2.6772 12 6 4.1679 3.6777 -2.9756 13 7 4.1651 4.8618 -2.4033 14 14 4.0345 3.5380 -4.8336 15 1 2.8216 2.7568 -5.1853 16 1 3.9373 4.8960 -5.4264 17 1 5.2381 2.8499 -5.3658 18 6 5.6625 2.6916 -0.1812 19 6 6.5659 1.7103 -0.5443 20 6 7.8640 1.7566 -0.0711 21 6 8.2561 2.7791 0.7725 22 6 7.3512 3.7575 1.1397 23 6 6.0544 3.7136 0.6630 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 2.0697 1.5877 2.1492 30 1 1.9979 3.1545 1.3071 31 1 0.5488 2.1253 1.3969 32 1 4.0933 5.6626 -2.9460 33 1 6.2587 0.9095 -1.2006 34 1 8.5711 0.9924 -0.3583 35 1 9.2695 2.8138 1.1443 36 1 7.6576 4.5566 1.7984 37 1 5.3473 4.4778 0.9502 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055026375.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:56 Heat of formation + Delta-G solvation = -52.967894 kcal Electronic energy + Delta-G solvation = -17961.870504 eV Core-core repulsion = 15281.601024 eV Total energy + Delta-G solvation = -2680.269480 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.94803 -39.36782 -36.25187 -35.51088 -32.93134 -31.55541 -30.79260 -29.14742 -26.39803 -25.58792 -23.24272 -23.03192 -21.44263 -19.89104 -18.55472 -17.49658 -17.15436 -16.49823 -16.26533 -15.75304 -15.52252 -15.37057 -14.71907 -14.27202 -14.11914 -13.94533 -13.74171 -13.34750 -13.22129 -12.95438 -12.91391 -12.77708 -12.56040 -12.42115 -12.14405 -11.95103 -11.63154 -11.59346 -11.54392 -11.29926 -10.70448 -10.08341 -9.57780 -9.22825 -8.23753 -6.34956 0.72534 0.78049 1.29573 1.40934 1.44738 1.50854 2.38749 3.03403 3.17891 3.49303 3.93654 4.09032 4.21897 4.28305 4.38213 4.44159 4.52724 4.58286 4.65671 4.73468 4.84980 4.91292 4.97569 5.01863 5.06202 5.12199 5.14975 5.21314 5.38011 5.40214 5.45403 5.52040 5.61043 5.76303 5.81750 5.95534 6.24031 6.39497 6.69100 6.93947 7.31124 8.84127 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.013567 B = 0.010735 C = 0.007102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.321490 B = 2607.669621 C = 3941.557191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C -0.136 4.136 4 H 0.092 0.908 5 C -0.131 4.131 6 C 0.374 3.626 7 O -0.504 6.504 8 C 0.024 3.976 9 H 0.068 0.932 10 C -0.520 4.520 11 H 0.046 0.954 12 C 0.034 3.966 13 N -0.901 5.901 14 Si 0.952 3.048 15 H -0.264 1.264 16 H -0.278 1.278 17 H -0.278 1.278 18 C -0.052 4.052 19 C -0.112 4.112 20 C -0.138 4.138 21 C -0.143 4.143 22 C -0.129 4.129 23 C -0.142 4.142 24 H 0.070 0.930 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.043 0.957 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.268 0.732 33 H 0.093 0.907 34 H 0.134 0.866 35 H 0.147 0.853 36 H 0.142 0.858 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.511 -3.119 5.614 6.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.144 4.144 3 C -0.155 4.155 4 H 0.110 0.890 5 C -0.188 4.188 6 C 0.254 3.746 7 O -0.381 6.381 8 C 0.005 3.995 9 H 0.086 0.914 10 C -0.557 4.557 11 H 0.064 0.936 12 C -0.169 4.169 13 N -0.538 5.538 14 Si 0.777 3.223 15 H -0.189 1.189 16 H -0.203 1.203 17 H -0.203 1.203 18 C -0.053 4.053 19 C -0.130 4.130 20 C -0.155 4.155 21 C -0.160 4.160 22 C -0.147 4.147 23 C -0.160 4.160 24 H 0.089 0.911 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.152 0.848 35 H 0.165 0.835 36 H 0.159 0.841 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.206 -3.412 5.770 7.057 hybrid contribution 0.047 0.216 -1.340 1.358 sum -2.159 -3.196 4.430 5.874 Atomic orbital electron populations 1.21780 0.93224 1.02479 1.02638 1.21354 0.97557 0.94041 1.01420 1.21683 0.93187 0.99218 1.01460 0.88983 1.21678 1.03213 0.99826 0.94088 1.25346 0.92230 0.87219 0.69834 1.90214 1.70530 1.36848 1.40531 1.18460 0.90132 0.95054 0.95871 0.91416 1.20662 1.52774 0.93151 0.89140 0.93559 1.25604 0.93602 0.94817 1.02842 1.70010 1.48546 0.97899 1.37332 0.85698 0.79006 0.77567 0.80029 1.18886 1.20322 1.20320 1.20380 0.97710 0.93838 0.93344 1.20904 0.94009 0.98388 0.99727 1.21346 0.95546 0.99741 0.98914 1.21281 1.00379 0.95038 0.99346 1.21327 0.93036 0.99641 1.00712 1.21177 0.97460 0.98475 0.98868 0.91088 0.92543 0.91531 0.93778 0.92153 0.92718 0.92738 0.88857 0.92298 0.88876 0.84819 0.83485 0.84071 0.87177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 9.67 71.98 0.70 -2.68 16 2 C -0.11 -3.34 4.85 30.59 0.15 -3.19 16 3 C -0.14 -4.90 2.65 -11.54 -0.03 -4.94 16 4 H 0.09 3.45 8.14 -2.38 -0.02 3.43 16 5 C -0.13 -3.88 8.93 71.98 0.64 -3.24 16 6 C 0.37 16.85 5.35 29.10 0.16 17.01 16 7 O -0.50 -24.39 14.96 -1.46 -0.02 -24.42 16 8 C 0.02 1.20 2.29 -13.04 -0.03 1.17 16 9 H 0.07 3.55 7.14 -2.39 -0.02 3.53 16 10 C -0.52 -27.88 7.64 25.60 0.20 -27.69 16 11 H 0.05 2.54 7.82 -2.91 -0.02 2.52 16 12 C 0.03 1.78 5.45 84.65 0.46 2.24 16 13 N -0.90 -49.39 12.85 21.45 0.28 -49.11 16 14 Si 0.95 42.15 29.54 68.60 2.03 44.17 16 15 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 16 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 18 C -0.05 -2.53 4.57 -19.87 -0.09 -2.62 16 19 C -0.11 -5.24 8.03 22.27 0.18 -5.06 16 20 C -0.14 -5.32 10.05 22.27 0.22 -5.10 16 21 C -0.14 -4.92 10.05 22.27 0.22 -4.69 16 22 C -0.13 -4.73 10.05 22.27 0.22 -4.50 16 23 C -0.14 -6.22 9.67 22.27 0.22 -6.00 16 24 H 0.07 1.44 6.56 -2.39 -0.02 1.42 16 25 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 27 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.06 1.92 8.03 -2.39 -0.02 1.90 16 29 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.09 2.16 6.56 -2.39 -0.02 2.15 16 32 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 33 H 0.09 4.60 7.65 -2.91 -0.02 4.58 16 34 H 0.13 4.31 8.06 -2.91 -0.02 4.28 16 35 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 36 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 37 H 0.11 4.71 7.96 -2.91 -0.02 4.69 16 Total: -1.00 -61.65 310.98 6.52 -55.13 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 1.03 Total: 23.54 kcal Atomic # 6 Polarization: -52.52 SS G_CDS: 3.21 Total: -49.31 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 0.28 Total: -49.11 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.02 Total: -24.42 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -61.65 6.52 -55.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055026375.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.158 kcal (2) G-P(sol) polarization free energy of solvation -61.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds