Wall clock time and date at job start Mon Mar 30 2020 05:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46619 * 2 1 4 4 H 1.08992 * 109.47119 * 55.00591 * 3 2 1 5 5 C 1.53003 * 109.47107 * 295.00058 * 3 2 1 6 6 C 1.50704 * 109.46885 * 175.00367 * 3 2 1 7 7 O 1.20765 * 119.99810 * 29.99977 * 6 3 2 8 8 C 1.50703 * 119.99908 * 210.00113 * 6 3 2 9 9 H 1.08997 * 109.47169 * 34.99709 * 8 6 3 10 10 C 1.50701 * 109.47032 * 274.99995 * 8 6 3 11 11 H 1.08001 * 119.99914 * 324.86720 * 10 8 6 12 12 C 1.37868 * 120.00097 * 144.86948 * 10 8 6 13 13 N 1.31513 * 119.99994 * 6.43812 * 12 10 8 14 14 Si 1.86801 * 120.00020 * 186.44025 * 12 10 8 15 15 H 1.48500 * 109.47187 * 60.00022 * 14 12 10 16 16 H 1.48505 * 109.47344 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47372 * 299.99888 * 14 12 10 18 18 C 1.50695 * 109.47075 * 154.99872 * 8 6 3 19 19 C 1.38240 * 120.00092 * 246.59368 * 18 8 6 20 20 C 1.38229 * 120.00127 * 179.97438 * 19 18 8 21 21 C 1.38236 * 119.99931 * 0.02562 * 20 19 18 22 22 C 1.38237 * 120.00221 * 359.97055 * 21 20 19 23 23 C 1.38229 * 119.99772 * 359.97438 * 22 21 20 24 24 H 1.08997 * 109.47449 * 60.00153 * 1 2 3 25 25 H 1.09001 * 109.46480 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.46808 * 299.99389 * 1 2 3 27 27 H 1.09003 * 109.46851 * 240.00705 * 2 1 3 28 28 H 1.08997 * 109.47449 * 119.99846 * 2 1 3 29 29 H 1.09002 * 109.46867 * 180.02562 * 5 3 2 30 30 H 1.09002 * 109.47251 * 299.99851 * 5 3 2 31 31 H 1.08996 * 109.47026 * 60.00212 * 5 3 2 32 32 H 0.97002 * 120.00398 * 179.97438 * 13 12 10 33 33 H 1.07998 * 119.99978 * 0.25187 * 19 18 8 34 34 H 1.08003 * 120.00334 * 179.97438 * 20 19 18 35 35 H 1.08003 * 120.00146 * 179.97438 * 21 20 19 36 36 H 1.07999 * 120.00184 * 179.97438 * 22 21 20 37 37 H 1.08004 * 119.99862 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6351 2.1266 -1.3074 6 6 3.5419 1.4444 0.1237 7 8 4.1855 0.5246 -0.3213 8 6 4.2405 2.5941 0.8029 9 1 3.6233 2.9611 1.6229 10 6 4.4655 3.7035 -0.1919 11 1 4.6873 3.4681 -1.2223 12 6 4.3883 5.0190 0.2134 13 7 4.2446 5.3069 1.4886 14 14 4.4877 6.3926 -1.0487 15 1 3.3757 6.2514 -2.0226 16 1 4.3799 7.7048 -0.3618 17 1 5.7861 6.3136 -1.7651 18 6 5.5675 2.1270 1.3431 19 6 5.7805 2.0809 2.7082 20 6 6.9976 1.6519 3.2037 21 6 8.0018 1.2696 2.3342 22 6 7.7889 1.3156 0.9691 23 6 6.5714 1.7435 0.4736 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8900 29 1 1.9987 3.1542 -1.3075 30 1 2.0698 1.5876 -2.1492 31 1 0.5488 2.1252 -1.3969 32 1 4.1906 6.2324 1.7738 33 1 4.9945 2.3757 3.3877 34 1 7.1642 1.6163 4.2703 35 1 8.9529 0.9348 2.7213 36 1 8.5736 1.0172 0.2898 37 1 6.4052 1.7798 -0.5929 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055026378.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:58 Heat of formation + Delta-G solvation = -52.137066 kcal Electronic energy + Delta-G solvation = -17982.282030 eV Core-core repulsion = 15302.048578 eV Total energy + Delta-G solvation = -2680.233452 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.94458 -39.36729 -36.23975 -35.49840 -32.91122 -31.55352 -30.78313 -29.03183 -26.66583 -25.37104 -23.24589 -23.03145 -21.42679 -19.89026 -18.59492 -17.47880 -17.12636 -16.46142 -16.16300 -15.87071 -15.59039 -15.07285 -14.94740 -14.20379 -14.07250 -13.99070 -13.58409 -13.44472 -13.24254 -12.92532 -12.86875 -12.75559 -12.53962 -12.39078 -12.15547 -11.94582 -11.63791 -11.58273 -11.52270 -11.28823 -10.68271 -10.07148 -9.57644 -9.22395 -8.21534 -6.31334 0.72705 0.78182 1.29656 1.42093 1.45802 1.51494 2.40101 3.04939 3.18863 3.49422 3.95016 4.11849 4.22064 4.28402 4.38298 4.45161 4.55517 4.58100 4.66579 4.76232 4.85552 4.91254 4.97536 5.02945 5.07525 5.15720 5.19686 5.22595 5.37954 5.43596 5.45525 5.54202 5.63294 5.76460 5.82000 5.96828 6.24412 6.39792 6.71436 6.94250 7.33635 8.86514 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.013419 B = 0.011065 C = 0.007008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.154771 B = 2529.992918 C = 3994.515709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 C -0.131 4.131 4 H 0.092 0.908 5 C -0.129 4.129 6 C 0.375 3.625 7 O -0.503 6.503 8 C 0.023 3.977 9 H 0.065 0.935 10 C -0.509 4.509 11 H 0.048 0.952 12 C 0.033 3.967 13 N -0.903 5.903 14 Si 0.949 3.051 15 H -0.262 1.262 16 H -0.281 1.281 17 H -0.279 1.279 18 C -0.052 4.052 19 C -0.142 4.142 20 C -0.130 4.130 21 C -0.143 4.143 22 C -0.138 4.138 23 C -0.111 4.111 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.267 0.733 33 H 0.109 0.891 34 H 0.141 0.859 35 H 0.147 0.853 36 H 0.134 0.866 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.966 -6.002 0.087 6.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.151 4.151 4 H 0.110 0.890 5 C -0.187 4.187 6 C 0.254 3.746 7 O -0.381 6.381 8 C 0.004 3.996 9 H 0.083 0.917 10 C -0.547 4.547 11 H 0.066 0.934 12 C -0.169 4.169 13 N -0.540 5.540 14 Si 0.774 3.226 15 H -0.186 1.186 16 H -0.206 1.206 17 H -0.204 1.204 18 C -0.053 4.053 19 C -0.161 4.161 20 C -0.148 4.148 21 C -0.161 4.161 22 C -0.155 4.155 23 C -0.129 4.129 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.127 0.873 34 H 0.159 0.841 35 H 0.165 0.835 36 H 0.152 0.848 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.667 -6.325 -0.013 6.864 hybrid contribution 0.189 1.139 -0.486 1.252 sum -2.478 -5.186 -0.498 5.769 Atomic orbital electron populations 1.21778 0.93208 1.02511 1.02654 1.21395 0.97632 0.93833 1.01613 1.21658 0.93051 0.98894 1.01461 0.89014 1.21646 1.02420 1.00379 0.94222 1.25351 0.92128 0.83973 0.73156 1.90216 1.69991 1.36759 1.41085 1.18494 0.91202 0.92626 0.97300 0.91722 1.20581 1.50126 0.89813 0.94144 0.93358 1.25581 0.93809 1.00625 0.96847 1.70016 1.48681 1.19829 1.15453 0.85742 0.78967 0.78380 0.79486 1.18608 1.20623 1.20413 1.20389 0.97587 0.93929 0.93382 1.21179 0.98531 1.01527 0.94826 1.21322 0.93166 0.99752 1.00530 1.21282 0.99904 1.01971 0.92911 1.21346 0.96786 1.00867 0.96547 1.20903 0.93853 0.99300 0.98866 0.91545 0.91420 0.92167 0.92395 0.93097 0.92685 0.93410 0.89305 0.92406 0.87271 0.84140 0.83515 0.84796 0.88740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.67 71.98 0.70 -2.56 16 2 C -0.11 -3.24 4.91 30.60 0.15 -3.09 16 3 C -0.13 -4.70 2.66 -11.54 -0.03 -4.73 16 4 H 0.09 3.21 8.08 -2.39 -0.02 3.19 16 5 C -0.13 -4.28 8.93 71.98 0.64 -3.63 16 6 C 0.37 16.74 5.30 29.10 0.15 16.89 16 7 O -0.50 -24.20 15.04 -1.46 -0.02 -24.22 16 8 C 0.02 1.14 2.29 -13.03 -0.03 1.11 16 9 H 0.06 3.39 7.10 -2.39 -0.02 3.38 16 10 C -0.51 -26.75 7.04 25.60 0.18 -26.57 16 11 H 0.05 2.59 7.82 -2.91 -0.02 2.57 16 12 C 0.03 1.75 5.45 84.65 0.46 2.21 16 13 N -0.90 -49.30 12.86 21.44 0.28 -49.02 16 14 Si 0.95 41.70 29.54 68.60 2.03 43.72 16 15 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 16 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 17 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 18 C -0.05 -2.53 4.57 -19.87 -0.09 -2.62 16 19 C -0.14 -6.27 9.67 22.27 0.22 -6.06 16 20 C -0.13 -4.77 10.05 22.27 0.22 -4.54 16 21 C -0.14 -4.93 10.05 22.27 0.22 -4.71 16 22 C -0.14 -5.30 10.05 22.27 0.22 -5.08 16 23 C -0.11 -5.16 8.03 22.27 0.18 -4.98 16 24 H 0.07 1.37 6.56 -2.39 -0.02 1.36 16 25 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 1.84 8.02 -2.39 -0.02 1.82 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.05 2.06 7.53 -2.39 -0.02 2.04 16 30 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.09 2.31 6.56 -2.39 -0.02 2.29 16 32 H 0.27 13.90 8.31 -92.71 -0.77 13.12 16 33 H 0.11 4.71 7.96 -2.91 -0.02 4.68 16 34 H 0.14 4.12 8.06 -2.91 -0.02 4.09 16 35 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 36 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 37 H 0.09 4.62 7.65 -2.91 -0.02 4.60 16 Total: -1.00 -60.70 309.76 6.51 -54.19 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 1.03 Total: 23.69 kcal Atomic # 6 Polarization: -51.56 SS G_CDS: 3.20 Total: -48.36 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.28 Total: -49.02 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.02 Total: -24.22 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Total: -60.70 6.51 -54.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055026378.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.053 kcal (2) G-P(sol) polarization free energy of solvation -60.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds