Wall clock time and date at job start Mon Mar 30 2020 06:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00072 * 2 1 4 4 H 1.48502 * 109.47151 * 239.99734 * 3 2 1 5 5 H 1.48497 * 109.47346 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47155 * 119.99873 * 3 2 1 7 7 C 1.37885 * 119.99783 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99657 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00225 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47491 * 179.97438 * 9 7 2 11 11 C 1.46845 * 111.00017 * 169.99812 * 10 9 7 12 12 C 1.53042 * 109.52100 * 185.83615 * 11 10 9 13 13 C 1.53112 * 109.28140 * 300.82456 * 12 11 10 14 14 C 1.50707 * 109.52536 * 177.55431 * 13 12 11 15 15 C 1.38227 * 119.62024 * 274.98098 * 14 13 12 16 16 C 1.38627 * 119.15702 * 179.78495 * 15 14 13 17 17 C 1.38669 * 118.42389 * 0.47826 * 16 15 14 18 18 C 1.38186 * 119.16143 * 359.49762 * 17 16 15 19 19 N 1.31856 * 119.61172 * 94.99850 * 14 13 12 20 20 C 1.53127 * 109.16117 * 57.65300 * 13 12 11 21 21 C 1.46846 * 110.99789 * 294.21284 * 10 9 7 22 22 H 0.96998 * 119.99845 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.47329 * 59.99979 * 9 7 2 24 24 H 1.09002 * 109.46972 * 300.00216 * 9 7 2 25 25 H 1.08998 * 109.46010 * 65.83118 * 11 10 9 26 26 H 1.08991 * 109.45686 * 305.84908 * 11 10 9 27 27 H 1.08998 * 109.50553 * 180.87810 * 12 11 10 28 28 H 1.08999 * 109.53014 * 60.78398 * 12 11 10 29 29 H 1.08994 * 109.52406 * 297.68412 * 13 12 11 30 30 H 1.07998 * 120.41916 * 359.97438 * 15 14 13 31 31 H 1.08008 * 120.78688 * 180.22921 * 16 15 14 32 32 H 1.08002 * 120.42244 * 179.78279 * 17 16 15 33 33 H 1.07996 * 119.61757 * 180.25243 * 18 17 16 34 34 H 1.09001 * 109.50272 * 62.28618 * 20 13 12 35 35 H 1.08998 * 109.50136 * 182.40506 * 20 13 12 36 36 H 1.09004 * 109.46040 * 294.17209 * 21 10 9 37 37 H 1.08998 * 109.46651 * 54.15117 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5213 -4.8930 0.2386 12 6 2.5578 -6.0105 0.3767 13 6 3.3916 -6.0879 -0.9052 14 6 4.4533 -7.1465 -0.7523 15 6 5.6539 -6.8275 -0.1460 16 6 6.6220 -7.8098 -0.0063 17 6 6.3492 -9.0794 -0.4929 18 6 5.1259 -9.3242 -1.0871 19 7 4.2263 -8.3662 -1.1988 20 6 4.0548 -4.7307 -1.1561 21 6 2.9749 -3.6504 -1.2498 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 0.8602 -5.1126 -0.5997 26 1 0.9356 -4.8257 1.1553 27 1 2.0491 -6.9609 0.5379 28 1 3.2109 -5.7992 1.2234 29 1 2.7449 -6.3394 -1.7457 30 1 5.8341 -5.8265 0.2171 31 1 7.5680 -7.5905 0.4666 32 1 7.0817 -9.8680 -0.4043 33 1 4.9041 -10.3113 -1.4649 34 1 4.7313 -4.4986 -0.3336 35 1 4.6154 -4.7668 -2.0902 36 1 2.3068 -3.8758 -2.0811 37 1 3.4448 -2.6807 -1.4141 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057497441.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:23 Heat of formation + Delta-G solvation = 26.794361 kcal Electronic energy + Delta-G solvation = -17454.558961 eV Core-core repulsion = 14810.040983 eV Total energy + Delta-G solvation = -2644.517978 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.41093 -38.11378 -34.24816 -32.55322 -32.32712 -30.38805 -30.07435 -26.91464 -24.48028 -23.72891 -22.43018 -22.13161 -20.81952 -19.12722 -16.97971 -16.25877 -16.18395 -15.58995 -15.02519 -14.28855 -14.19686 -14.10409 -13.79860 -13.44647 -13.04698 -12.82617 -12.65716 -11.97377 -11.87013 -11.70398 -11.22442 -10.87843 -10.74505 -10.62514 -10.43447 -10.24432 -10.04330 -9.89663 -9.68996 -9.38950 -9.14106 -8.91846 -8.41243 -7.18596 -6.00635 -4.01997 1.07759 1.24042 3.34505 3.38647 3.41335 3.76265 4.22205 4.43891 4.71172 4.75739 4.95068 5.01044 5.10642 5.25580 5.30056 5.34785 5.38460 5.61660 5.73233 5.84950 5.92253 5.99710 6.03969 6.10781 6.21026 6.25529 6.32682 6.43927 6.54155 6.65600 6.75162 6.78018 7.34608 7.39242 7.82571 7.99972 8.13210 8.25017 8.59047 9.05528 9.62071 11.10278 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.045942 B = 0.004524 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.318819 B = 6187.079061 C = 6563.341189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.507 4.507 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.536 5.536 11 C 0.056 3.944 12 C -0.099 4.099 13 C -0.041 4.041 14 C 0.147 3.853 15 C -0.167 4.167 16 C -0.076 4.076 17 C -0.187 4.187 18 C 0.097 3.903 19 N -0.486 5.486 20 C -0.110 4.110 21 C 0.065 3.935 22 H 0.261 0.739 23 H -0.010 1.010 24 H 0.030 0.970 25 H 0.023 0.977 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.140 0.860 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.152 0.848 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.020 0.980 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.051 -15.817 -1.090 19.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.262 5.262 11 C -0.072 4.072 12 C -0.138 4.138 13 C -0.060 4.060 14 C 0.010 3.990 15 C -0.187 4.187 16 C -0.102 4.102 17 C -0.207 4.207 18 C -0.060 4.060 19 N -0.195 5.195 20 C -0.148 4.148 21 C -0.063 4.063 22 H 0.071 0.929 23 H 0.008 0.992 24 H 0.048 0.952 25 H 0.041 0.959 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.158 0.842 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.169 0.831 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.038 0.962 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.413 -15.804 -1.102 18.958 hybrid contribution 0.691 0.863 -0.247 1.133 sum 11.104 -14.941 -1.348 18.664 Atomic orbital electron populations 1.69952 1.06073 1.26849 1.51011 1.24992 0.94850 0.99282 0.95493 0.86569 0.79439 0.82820 0.78619 1.20294 1.21392 1.20182 1.21131 0.93440 0.89971 1.50050 0.91906 1.19705 0.90095 0.87353 0.96096 1.62043 1.27874 1.02654 1.33587 1.21994 0.94703 0.90322 1.00228 1.21570 0.97734 0.98101 0.96351 1.20215 0.94258 0.91692 0.99822 1.21420 0.93799 0.91807 0.91987 1.22133 0.94478 1.01153 1.00917 1.21601 0.99147 0.92937 0.96501 1.22080 0.99040 0.97947 1.01660 1.22721 0.89678 0.98134 0.95484 1.67536 1.33485 1.00844 1.17664 1.21776 0.98561 0.93094 1.01361 1.21921 0.94841 0.98700 0.90842 0.92892 0.99174 0.95182 0.95928 0.91187 0.92170 0.91300 0.89799 0.84183 0.85033 0.85192 0.83096 0.90932 0.92220 0.96171 0.89581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 13.29 55.43 0.74 -26.09 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.20 8.43 -34.44 -0.29 -14.49 16 8 H 0.06 1.72 7.12 -52.49 -0.37 1.35 16 9 C 0.19 5.04 4.72 -4.98 -0.02 5.02 16 10 N -0.54 -11.54 4.65 -236.12 -1.10 -12.64 16 11 C 0.06 1.03 5.46 -3.83 -0.02 1.01 16 12 C -0.10 -1.53 5.36 -26.65 -0.14 -1.67 16 13 C -0.04 -0.60 2.57 -91.65 -0.24 -0.84 16 14 C 0.15 2.05 5.80 -82.58 -0.48 1.57 16 15 C -0.17 -2.02 9.18 -39.44 -0.36 -2.39 16 16 C -0.08 -0.76 10.18 -39.28 -0.40 -1.16 16 17 C -0.19 -1.78 10.11 -39.44 -0.40 -2.17 16 18 C 0.10 1.07 11.18 -17.55 -0.20 0.87 16 19 N -0.49 -6.82 10.27 -9.47 -0.10 -6.92 16 20 C -0.11 -1.68 4.86 -26.65 -0.13 -1.81 16 21 C 0.07 1.26 5.29 -3.84 -0.02 1.24 16 22 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 23 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 24 H 0.03 0.84 7.99 -51.93 -0.41 0.43 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 1.28 8.01 -51.93 -0.42 0.86 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.14 1.59 6.25 -52.49 -0.33 1.27 16 31 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 32 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.07 1.08 6.37 -51.93 -0.33 0.75 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.09 1.79 6.70 -51.93 -0.35 1.44 16 LS Contribution 299.57 15.07 4.51 4.51 Total: -1.00 -30.74 299.57 -9.33 -40.08 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -5.57 Total: -2.15 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -2.80 Total: -13.36 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: -0.46 Total: -45.65 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.74 -9.33 -40.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057497441.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.871 kcal (2) G-P(sol) polarization free energy of solvation -30.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds