Wall clock time and date at job start Mon Mar 30 2020 06:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00072 * 2 1 4 4 H 1.48502 * 109.47151 * 239.99734 * 3 2 1 5 5 H 1.48497 * 109.47346 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47155 * 119.99873 * 3 2 1 7 7 C 1.37885 * 119.99783 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99657 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00225 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47491 * 179.97438 * 9 7 2 11 11 C 1.46845 * 111.00017 * 169.99812 * 10 9 7 12 12 C 1.53042 * 109.52100 * 185.83615 * 11 10 9 13 13 C 1.53112 * 109.28140 * 300.82456 * 12 11 10 14 14 C 1.50707 * 109.52536 * 177.55431 * 13 12 11 15 15 C 1.38227 * 119.62024 * 274.98098 * 14 13 12 16 16 C 1.38627 * 119.15702 * 179.78495 * 15 14 13 17 17 C 1.38669 * 118.42389 * 0.47826 * 16 15 14 18 18 C 1.38186 * 119.16143 * 359.49762 * 17 16 15 19 19 N 1.31856 * 119.61172 * 94.99850 * 14 13 12 20 20 C 1.53127 * 109.16117 * 57.65300 * 13 12 11 21 21 C 1.46846 * 110.99789 * 294.21284 * 10 9 7 22 22 H 0.96998 * 119.99845 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.47329 * 59.99979 * 9 7 2 24 24 H 1.09002 * 109.46972 * 300.00216 * 9 7 2 25 25 H 1.08998 * 109.46010 * 65.83118 * 11 10 9 26 26 H 1.08991 * 109.45686 * 305.84908 * 11 10 9 27 27 H 1.08998 * 109.50553 * 180.87810 * 12 11 10 28 28 H 1.08999 * 109.53014 * 60.78398 * 12 11 10 29 29 H 1.08994 * 109.52406 * 297.68412 * 13 12 11 30 30 H 1.07998 * 120.41916 * 359.97438 * 15 14 13 31 31 H 1.08008 * 120.78688 * 180.22921 * 16 15 14 32 32 H 1.08002 * 120.42244 * 179.78279 * 17 16 15 33 33 H 1.07996 * 119.61757 * 180.25243 * 18 17 16 34 34 H 1.09001 * 109.50272 * 62.28618 * 20 13 12 35 35 H 1.08998 * 109.50136 * 182.40506 * 20 13 12 36 36 H 1.09004 * 109.46040 * 294.17209 * 21 10 9 37 37 H 1.08998 * 109.46651 * 54.15117 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5213 -4.8930 0.2386 12 6 2.5578 -6.0105 0.3767 13 6 3.3916 -6.0879 -0.9052 14 6 4.4533 -7.1465 -0.7523 15 6 5.6539 -6.8275 -0.1460 16 6 6.6220 -7.8098 -0.0063 17 6 6.3492 -9.0794 -0.4929 18 6 5.1259 -9.3242 -1.0871 19 7 4.2263 -8.3662 -1.1988 20 6 4.0548 -4.7307 -1.1561 21 6 2.9749 -3.6504 -1.2498 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 0.8602 -5.1126 -0.5997 26 1 0.9356 -4.8257 1.1553 27 1 2.0491 -6.9609 0.5379 28 1 3.2109 -5.7992 1.2234 29 1 2.7449 -6.3394 -1.7457 30 1 5.8341 -5.8265 0.2171 31 1 7.5680 -7.5905 0.4666 32 1 7.0817 -9.8680 -0.4043 33 1 4.9041 -10.3113 -1.4649 34 1 4.7313 -4.4986 -0.3336 35 1 4.6154 -4.7668 -2.0902 36 1 2.3068 -3.8758 -2.0811 37 1 3.4448 -2.6807 -1.4141 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057497441.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:22 Heat of formation + Delta-G solvation = 7.445555 kcal Electronic energy + Delta-G solvation = -17455.397988 eV Core-core repulsion = 14810.040983 eV Total energy + Delta-G solvation = -2645.357005 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.35902 -39.54777 -35.84702 -34.29168 -33.34011 -31.82122 -31.28640 -28.76289 -25.99157 -24.70957 -23.74515 -23.65775 -22.28179 -20.50508 -18.44549 -17.84907 -17.11117 -16.95336 -16.37329 -15.96135 -15.66476 -15.24497 -15.14953 -14.79329 -14.25244 -14.14828 -13.90900 -13.74997 -13.38228 -13.10583 -12.74488 -12.60839 -12.48898 -12.15774 -11.99365 -11.87288 -11.57083 -11.34168 -11.08445 -10.73862 -10.59484 -10.29030 -9.81221 -9.00972 -8.19090 -6.29516 0.23389 0.43337 1.42431 1.45997 1.53785 2.41706 2.89877 3.12937 3.23807 3.33531 3.73027 3.96313 4.05355 4.12845 4.23061 4.28114 4.31980 4.35332 4.47924 4.65932 4.70962 4.77629 4.83374 4.92140 4.97359 5.00180 5.12308 5.15827 5.17589 5.26350 5.34292 5.38749 5.48243 5.66707 5.87186 6.06516 6.36001 6.65568 6.86743 7.13174 7.40275 8.92178 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.045942 B = 0.004524 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.318819 B = 6187.079061 C = 6563.341189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.000 4.000 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.523 4.523 8 H 0.066 0.934 9 C 0.206 3.794 10 N -0.539 5.539 11 C 0.054 3.946 12 C -0.086 4.086 13 C -0.034 4.034 14 C 0.126 3.874 15 C -0.177 4.177 16 C -0.076 4.076 17 C -0.176 4.176 18 C 0.084 3.916 19 N -0.518 5.518 20 C -0.096 4.096 21 C 0.065 3.935 22 H 0.264 0.736 23 H -0.041 1.041 24 H 0.004 0.996 25 H 0.016 0.984 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.144 0.856 31 H 0.162 0.838 32 H 0.166 0.834 33 H 0.176 0.824 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.010 0.990 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.914 -16.914 -0.840 21.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.561 4.561 8 H 0.084 0.916 9 C 0.079 3.921 10 N -0.264 5.264 11 C -0.074 4.074 12 C -0.125 4.125 13 C -0.053 4.053 14 C -0.011 4.011 15 C -0.196 4.196 16 C -0.101 4.101 17 C -0.195 4.195 18 C -0.073 4.073 19 N -0.227 5.227 20 C -0.134 4.134 21 C -0.063 4.063 22 H 0.073 0.927 23 H -0.024 1.024 24 H 0.022 0.978 25 H 0.035 0.965 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.161 0.839 31 H 0.179 0.821 32 H 0.183 0.817 33 H 0.193 0.807 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.028 0.972 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.291 -16.923 -0.854 21.535 hybrid contribution -0.194 1.080 -0.334 1.147 sum 13.097 -15.843 -1.188 20.590 Atomic orbital electron populations 1.70092 1.07863 1.27971 1.51823 1.25952 0.95729 1.03313 0.94776 0.85409 0.78119 0.77729 0.79205 1.19114 1.20982 1.19166 1.21443 0.93722 0.90902 1.50040 0.91561 1.19382 0.90209 0.89178 0.93295 1.61991 1.26866 1.02699 1.34833 1.22078 0.95642 0.89947 0.99721 1.21446 0.96962 0.97003 0.97044 1.20030 0.94537 0.92025 0.98735 1.21130 0.94169 0.91713 0.94094 1.22230 0.94403 1.02026 1.00977 1.22000 0.99702 0.92607 0.95824 1.22487 0.98878 0.98610 0.99551 1.23234 0.89982 0.98505 0.95540 1.67452 1.35155 1.01414 1.18691 1.21651 0.97157 0.91878 1.02669 1.21945 0.95380 0.99494 0.89474 0.92710 1.02369 0.97825 0.96543 0.91583 0.90963 0.90977 0.91115 0.83873 0.82058 0.81680 0.80708 0.90067 0.90466 0.97179 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.31 13.29 21.45 0.28 -57.02 16 2 C 0.00 0.01 5.46 84.66 0.46 0.47 16 3 Si 0.97 44.42 29.54 68.60 2.03 46.44 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.52 -29.97 8.43 25.60 0.22 -29.75 16 8 H 0.07 3.67 7.12 -2.91 -0.02 3.65 16 9 C 0.21 11.31 4.72 85.55 0.40 11.71 16 10 N -0.54 -23.95 4.65 -900.96 -4.19 -28.13 16 11 C 0.05 2.06 5.46 86.33 0.47 2.53 16 12 C -0.09 -2.63 5.36 30.65 0.16 -2.47 16 13 C -0.03 -0.99 2.57 -11.46 -0.03 -1.02 16 14 C 0.13 3.31 5.80 42.55 0.25 3.56 16 15 C -0.18 -3.86 9.18 22.36 0.21 -3.65 16 16 C -0.08 -1.24 10.18 22.47 0.23 -1.01 16 17 C -0.18 -2.63 10.11 22.36 0.23 -2.40 16 18 C 0.08 1.62 11.18 84.67 0.95 2.57 16 19 N -0.52 -13.71 10.27 -183.88 -1.89 -15.60 16 20 C -0.10 -2.87 4.86 30.65 0.15 -2.72 16 21 C 0.07 2.58 5.29 86.33 0.46 3.04 16 22 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 23 H -0.04 -2.48 8.12 -2.38 -0.02 -2.50 16 24 H 0.00 0.22 7.99 -2.39 -0.02 0.20 16 25 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.07 2.51 8.01 -2.39 -0.02 2.49 16 27 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.14 2.93 6.25 -2.91 -0.02 2.91 16 31 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 32 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 33 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 34 H 0.08 2.32 6.37 -2.39 -0.02 2.30 16 35 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.07 2.92 6.70 -2.39 -0.02 2.91 16 Total: -1.00 -67.90 299.57 1.42 -66.48 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: 1.04 Total: 6.98 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: 4.15 Total: -19.15 kcal Atomic # 7 Polarization: -94.97 SS G_CDS: -5.79 Total: -100.76 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -67.90 1.42 -66.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057497441.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.927 kcal (2) G-P(sol) polarization free energy of solvation -67.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds