Wall clock time and date at job start Mon Mar 30 2020 05:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00348 * 2 1 4 4 H 1.48500 * 109.47022 * 239.99563 * 3 2 1 5 5 H 1.48502 * 109.47144 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47306 * 119.99594 * 3 2 1 7 7 C 1.37882 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00493 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99681 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46821 * 179.97438 * 9 7 2 11 11 C 1.46856 * 110.99619 * 170.00380 * 10 9 7 12 12 C 1.53039 * 109.51787 * 185.84053 * 11 10 9 13 13 C 1.53123 * 109.31189 * 300.79882 * 12 11 10 14 14 C 1.50697 * 109.52128 * 177.58251 * 13 12 11 15 15 C 1.38672 * 120.41835 * 119.72444 * 14 13 12 16 16 C 1.38632 * 118.42238 * 179.78240 * 15 14 13 17 17 C 1.38226 * 119.15695 * 0.50621 * 16 15 14 18 18 N 1.31856 * 120.76654 * 359.73265 * 17 16 15 19 19 C 1.31888 * 121.72204 * 359.97438 * 18 17 16 20 20 C 1.53203 * 109.11533 * 57.63615 * 13 12 11 21 21 C 1.46846 * 111.00121 * 294.21263 * 10 9 7 22 22 H 0.97003 * 120.00020 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.46802 * 60.00477 * 9 7 2 24 24 H 1.08994 * 109.47523 * 299.99780 * 9 7 2 25 25 H 1.09000 * 109.46462 * 65.82793 * 11 10 9 26 26 H 1.09001 * 109.45242 * 305.84772 * 11 10 9 27 27 H 1.09002 * 109.50563 * 60.76214 * 12 11 10 28 28 H 1.09003 * 109.50107 * 180.84195 * 12 11 10 29 29 H 1.08997 * 109.52263 * 297.77214 * 13 12 11 30 30 H 1.08008 * 120.79246 * 0.02562 * 15 14 13 31 31 H 1.08001 * 120.42067 * 180.21879 * 16 15 14 32 32 H 1.07998 * 119.61352 * 179.74836 * 17 16 15 33 33 H 1.08004 * 119.61199 * 179.97438 * 19 18 17 34 34 H 1.08997 * 109.49417 * 182.41991 * 20 13 12 35 35 H 1.09007 * 109.52297 * 62.34418 * 20 13 12 36 36 H 1.09004 * 109.46012 * 294.17710 * 21 10 9 37 37 H 1.08997 * 109.46257 * 54.15030 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2055 -3.6158 0.0005 11 6 1.5211 -4.8931 0.2385 12 6 2.5576 -6.0106 0.3767 13 6 3.3917 -6.0889 -0.9051 14 6 4.4526 -7.1481 -0.7515 15 6 4.4876 -8.2365 -1.6101 16 6 5.4843 -9.1839 -1.4342 17 6 6.3972 -9.0187 -0.4096 18 7 6.3305 -7.9733 0.3912 19 6 5.3997 -7.0497 0.2498 20 6 4.0546 -4.7308 -1.1561 21 6 2.9749 -3.6504 -1.2498 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6239 -2.5567 0.8902 25 1 0.8600 -5.1127 -0.5998 26 1 0.9353 -4.8258 1.1552 27 1 3.2106 -5.7986 1.2234 28 1 2.0488 -6.9609 0.5384 29 1 2.7448 -6.3393 -1.7458 30 1 3.7581 -8.3416 -2.3996 31 1 5.5439 -10.0425 -2.0867 32 1 7.1742 -9.7544 -0.2633 33 1 5.3766 -6.2074 0.9254 34 1 4.6154 -4.7668 -2.0901 35 1 4.7316 -4.4984 -0.3340 36 1 2.3068 -3.8758 -2.0811 37 1 3.4447 -2.6807 -1.4141 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057497451.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:00 Heat of formation + Delta-G solvation = 4.670394 kcal Electronic energy + Delta-G solvation = -17444.435128 eV Core-core repulsion = 14798.957783 eV Total energy + Delta-G solvation = -2645.477345 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.32630 -39.57397 -35.99652 -34.43253 -33.04744 -31.75182 -31.32794 -28.67532 -25.90471 -24.56218 -24.00325 -23.62178 -22.24987 -20.46004 -18.45051 -18.01559 -17.18388 -16.98036 -16.34596 -15.83288 -15.54465 -15.12150 -15.01332 -14.82557 -14.34555 -14.14472 -13.89060 -13.82403 -13.39791 -13.16612 -12.83093 -12.60495 -12.54646 -12.13535 -12.02112 -11.88925 -11.63999 -11.27443 -11.04095 -10.63623 -10.60105 -10.30443 -9.79381 -8.98262 -8.20273 -6.30455 0.23336 0.41034 1.41211 1.44439 1.52330 2.40593 2.91464 3.11946 3.31069 3.53011 3.77546 3.81091 4.01329 4.11249 4.15306 4.26134 4.34369 4.42416 4.48508 4.64402 4.72347 4.78694 4.85176 4.93384 4.97926 5.02296 5.15927 5.17923 5.20586 5.25958 5.32899 5.38002 5.55469 5.66401 5.85982 6.06618 6.37436 6.68213 6.86093 7.09615 7.39403 8.90731 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.045391 B = 0.004473 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.720098 B = 6257.651791 C = 6530.157529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.002 3.998 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.524 4.524 8 H 0.063 0.937 9 C 0.207 3.793 10 N -0.543 5.543 11 C 0.053 3.947 12 C -0.094 4.094 13 C -0.036 4.036 14 C -0.122 4.122 15 C -0.079 4.079 16 C -0.165 4.165 17 C 0.076 3.924 18 N -0.514 5.514 19 C 0.089 3.911 20 C -0.096 4.096 21 C 0.066 3.934 22 H 0.264 0.736 23 H -0.039 1.039 24 H 0.003 0.997 25 H 0.021 0.979 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.154 0.846 31 H 0.166 0.834 32 H 0.177 0.823 33 H 0.148 0.852 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.015 0.985 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.526 -18.197 -4.351 20.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.196 4.196 3 Si 0.793 3.207 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.562 4.562 8 H 0.081 0.919 9 C 0.080 3.920 10 N -0.268 5.268 11 C -0.075 4.075 12 C -0.132 4.132 13 C -0.055 4.055 14 C -0.124 4.124 15 C -0.105 4.105 16 C -0.184 4.184 17 C -0.081 4.081 18 N -0.223 5.223 19 C -0.068 4.068 20 C -0.134 4.134 21 C -0.062 4.062 22 H 0.073 0.927 23 H -0.022 1.022 24 H 0.021 0.979 25 H 0.039 0.961 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.171 0.829 31 H 0.183 0.817 32 H 0.194 0.806 33 H 0.166 0.834 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.034 0.966 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.324 -17.927 -3.287 20.947 hybrid contribution -1.354 1.042 -1.155 2.062 sum 8.970 -16.885 -4.442 19.629 Atomic orbital electron populations 1.70081 1.07760 1.27964 1.51808 1.25915 0.95727 1.03196 0.94788 0.85445 0.78168 0.77928 0.79140 1.19176 1.20819 1.19357 1.21445 0.93614 0.91097 1.50054 0.91886 1.19363 0.90172 0.89131 0.93306 1.61967 1.26956 1.02904 1.34997 1.22104 0.95788 0.89932 0.99717 1.21574 0.97020 0.97172 0.97446 1.20102 0.94285 0.92369 0.98784 1.20823 0.97652 0.96995 0.96957 1.21868 0.98178 0.92444 0.98019 1.22470 0.95363 1.00934 0.99639 1.23260 0.98616 0.94932 0.91242 1.67697 1.23199 1.03361 1.28005 1.22679 0.90516 0.97066 0.96501 1.21616 0.96934 0.92606 1.02255 1.21931 0.95412 0.99332 0.89548 0.92681 1.02171 0.97912 0.96071 0.91978 0.91460 0.90069 0.89760 0.82882 0.81669 0.80602 0.83437 0.90522 0.91582 0.96648 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.94 13.29 21.45 0.28 -56.65 16 2 C 0.00 0.10 5.46 84.66 0.46 0.56 16 3 Si 0.97 44.62 29.54 68.60 2.03 46.65 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.52 -30.08 8.43 25.60 0.22 -29.86 16 8 H 0.06 3.54 7.12 -2.91 -0.02 3.52 16 9 C 0.21 11.23 4.72 85.56 0.40 11.63 16 10 N -0.54 -23.64 4.65 -900.91 -4.19 -27.83 16 11 C 0.05 1.88 5.46 86.32 0.47 2.35 16 12 C -0.09 -2.57 5.23 30.65 0.16 -2.41 16 13 C -0.04 -0.89 2.45 -11.43 -0.03 -0.92 16 14 C -0.12 -2.71 4.80 -19.78 -0.09 -2.80 16 15 C -0.08 -1.38 9.81 22.47 0.22 -1.16 16 16 C -0.16 -2.46 10.11 22.36 0.23 -2.23 16 17 C 0.08 1.40 11.18 84.69 0.95 2.34 16 18 N -0.51 -12.80 10.36 -195.84 -2.03 -14.82 16 19 C 0.09 2.20 9.86 84.67 0.83 3.04 16 20 C -0.10 -2.79 5.23 30.67 0.16 -2.63 16 21 C 0.07 2.53 5.29 86.32 0.46 2.99 16 22 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 23 H -0.04 -2.32 8.12 -2.39 -0.02 -2.34 16 24 H 0.00 0.16 7.99 -2.39 -0.02 0.14 16 25 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.06 2.26 8.02 -2.39 -0.02 2.25 16 27 H 0.07 1.91 7.35 -2.39 -0.02 1.89 16 28 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.08 1.93 7.94 -2.39 -0.02 1.91 16 30 H 0.15 1.97 8.01 -2.91 -0.02 1.95 16 31 H 0.17 1.31 8.06 -2.91 -0.02 1.28 16 32 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.15 3.75 7.09 -2.91 -0.02 3.73 16 34 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 1.99 7.33 -2.38 -0.02 1.97 16 36 H 0.02 0.59 8.14 -2.38 -0.02 0.57 16 37 H 0.06 2.62 6.70 -2.39 -0.02 2.60 16 Total: -1.00 -67.21 299.82 1.56 -65.65 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: 1.03 Total: 6.12 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: 4.44 Total: -19.11 kcal Atomic # 7 Polarization: -93.38 SS G_CDS: -5.93 Total: -99.31 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -67.21 1.56 -65.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057497451.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.316 kcal (2) G-P(sol) polarization free energy of solvation -67.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds