Wall clock time and date at job start Mon Mar 30 2020 06:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38337 * 119.86064 * 2 1 4 4 C 1.38543 * 119.88531 * 179.97438 * 3 2 1 5 5 C 1.39728 * 119.86651 * 359.96367 * 4 3 2 6 6 C 1.38775 * 119.83769 * 0.08714 * 5 4 3 7 7 C 1.38234 * 119.85715 * 359.93741 * 6 5 4 8 8 C 1.50700 * 119.86445 * 180.02562 * 7 6 5 9 9 N 1.39614 * 119.87577 * 180.10505 * 5 4 3 10 10 C 1.36797 * 120.58929 * 163.30367 * 9 5 4 11 11 H 1.07999 * 120.00487 * 139.54298 * 10 9 5 12 12 C 1.38758 * 119.99764 * 319.54317 * 10 9 5 13 13 N 1.31622 * 120.00063 * 154.68272 * 12 10 9 14 14 Si 1.86801 * 120.00023 * 334.68232 * 12 10 9 15 15 H 1.48506 * 109.47136 * 271.37020 * 14 12 10 16 16 H 1.48491 * 109.47231 * 31.37224 * 14 12 10 17 17 H 1.48504 * 109.47169 * 151.37377 * 14 12 10 18 18 C 1.47043 * 118.82636 * 343.57908 * 9 5 4 19 19 C 1.53127 * 108.45621 * 44.76619 * 18 9 5 20 20 H 1.08996 * 109.78562 * 183.89911 * 19 18 9 21 21 C 1.52999 * 109.58165 * 63.33326 * 19 18 9 22 22 N 1.40000 * 120.29275 * 179.81206 * 4 3 2 23 23 H 1.09003 * 109.46890 * 269.97673 * 1 2 3 24 24 H 1.09000 * 109.46736 * 29.97986 * 1 2 3 25 25 H 1.09004 * 109.46784 * 149.98106 * 1 2 3 26 26 H 1.08001 * 120.05456 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.06894 * 179.97438 * 6 5 4 28 28 H 1.09001 * 109.47192 * 95.38012 * 8 7 6 29 29 H 1.08998 * 109.47144 * 215.38147 * 8 7 6 30 30 H 1.09002 * 109.46891 * 335.38042 * 8 7 6 31 31 H 0.97009 * 120.00379 * 180.02562 * 13 12 10 32 32 H 1.09003 * 109.71231 * 164.53829 * 18 9 5 33 33 H 1.08998 * 109.71390 * 285.16848 * 18 9 5 34 34 H 1.09006 * 109.47618 * 301.20988 * 21 19 18 35 35 H 1.09004 * 109.46954 * 61.20843 * 21 19 18 36 36 H 1.08996 * 109.47281 * 181.20674 * 21 19 18 37 37 H 0.96994 * 120.62265 * 343.62858 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1997 0.0000 4 6 3.5812 1.2003 0.0005 5 6 4.2775 -0.0111 0.0018 6 6 3.5780 -1.2096 0.0008 7 6 2.1957 -1.1996 -0.0003 8 6 1.4358 -2.5011 -0.0009 9 7 5.6737 -0.0107 0.0046 10 6 6.3694 -1.1385 0.3442 11 1 7.2580 -1.4110 -0.2058 12 6 5.9335 -1.9324 1.3955 13 7 6.2471 -3.2102 1.4292 14 14 4.9014 -1.1875 2.7628 15 1 5.7945 -0.6555 3.8234 16 1 4.0736 -0.0841 2.2131 17 1 4.0157 -2.2310 3.3390 18 6 6.3830 1.2252 -0.3581 19 6 5.7116 2.3984 0.3612 20 1 6.1770 3.3348 0.0537 21 6 5.8558 2.2227 1.8742 22 7 4.2869 2.4095 -0.0034 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8899 -0.5142 26 1 1.6544 2.1342 -0.0004 27 1 4.1124 -2.1481 0.0014 28 1 1.1687 -2.7663 1.0221 29 1 0.5295 -2.3924 -0.5966 30 1 2.0598 -3.2859 -0.4285 31 1 5.9420 -3.7654 2.1640 32 1 7.4262 1.1543 -0.0499 33 1 6.3272 1.3784 -1.4358 34 1 5.3986 1.2802 2.1758 35 1 6.9129 2.2151 2.1399 36 1 5.3588 3.0474 2.3848 37 1 3.8443 3.2390 -0.2418 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076928462.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:30 Heat of formation + Delta-G solvation = 27.673336 kcal Electronic energy + Delta-G solvation = -18919.391773 eV Core-core repulsion = 16274.911911 eV Total energy + Delta-G solvation = -2644.479863 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.24578 -38.35220 -36.45880 -33.82692 -33.64505 -32.13434 -30.16236 -28.20339 -27.65523 -26.72944 -24.20313 -22.73805 -22.63770 -19.97882 -19.09021 -17.89061 -17.30939 -17.19562 -15.85833 -15.64286 -15.46907 -15.00894 -14.97845 -14.50668 -14.37188 -14.13246 -13.86277 -13.48166 -13.37837 -13.25334 -12.90513 -12.68242 -12.66918 -12.56344 -12.32708 -12.10992 -11.79440 -11.56505 -11.29874 -10.88277 -10.38688 -10.02576 -8.60936 -8.46775 -7.69672 -5.81680 0.81292 1.00367 1.29888 1.32713 1.50138 2.29642 2.66985 2.80799 3.14563 3.32572 4.00602 4.18919 4.26879 4.30361 4.35378 4.54156 4.62140 4.65488 4.71759 4.81280 4.85478 4.91465 4.96450 5.02349 5.04289 5.13280 5.19685 5.35554 5.36899 5.50603 5.62551 5.69152 5.79195 6.06784 6.17500 6.32037 6.58984 6.89971 7.23602 7.43986 7.76184 8.65448 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018216 B = 0.014176 C = 0.009713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.700137 B = 1974.733993 C = 2882.024981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.142 4.142 3 C -0.146 4.146 4 C 0.106 3.894 5 C 0.154 3.846 6 C -0.194 4.194 7 C -0.108 4.108 8 C -0.102 4.102 9 N -0.505 5.505 10 C -0.312 4.312 11 H 0.059 0.941 12 C 0.041 3.959 13 N -0.908 5.908 14 Si 0.907 3.093 15 H -0.291 1.291 16 H -0.226 1.226 17 H -0.303 1.303 18 C 0.103 3.897 19 C 0.143 3.857 20 H 0.127 0.873 21 C -0.171 4.171 22 N -0.745 5.745 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.138 0.862 27 H 0.094 0.906 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.271 0.729 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.030 0.970 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.250 11.798 -1.800 14.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.146 4.146 3 C -0.169 4.169 4 C 0.003 3.997 5 C 0.046 3.954 6 C -0.219 4.219 7 C -0.111 4.111 8 C -0.159 4.159 9 N -0.206 5.206 10 C -0.440 4.440 11 H 0.076 0.924 12 C -0.162 4.162 13 N -0.545 5.545 14 Si 0.734 3.266 15 H -0.218 1.218 16 H -0.149 1.149 17 H -0.230 1.230 18 C -0.021 4.021 19 C 0.036 3.964 20 H 0.145 0.855 21 C -0.230 4.230 22 N -0.382 5.382 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.155 0.845 27 H 0.112 0.888 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -7.821 11.574 -1.689 14.070 hybrid contribution 0.180 -0.362 0.847 0.938 sum -7.641 11.212 -0.842 13.594 Atomic orbital electron populations 1.20631 0.89562 1.02913 1.01832 1.19459 0.96769 0.91354 1.06973 1.20406 0.90854 0.98289 1.07328 1.17427 0.91423 0.85361 1.05530 1.17785 0.84539 0.92744 1.00332 1.20494 0.94069 0.96570 1.10731 1.19588 0.92294 0.96057 1.03126 1.20713 0.99907 0.93504 1.01731 1.42258 1.00406 1.09382 1.68526 1.18526 1.11115 1.01027 1.13362 0.92378 1.25783 0.97147 0.94721 0.98514 1.70005 1.47143 1.05149 1.32219 0.86516 0.79645 0.80157 0.80248 1.21802 1.14945 1.23001 1.22124 0.96950 0.84883 0.98168 1.21309 0.82340 0.99241 0.93536 0.85487 1.22378 1.01994 1.01385 0.97239 1.44258 1.09211 1.05845 1.78836 0.91894 0.90898 0.91117 0.84459 0.88775 0.92152 0.89163 0.93581 0.91943 0.89980 0.93183 0.95094 0.91417 0.91380 0.75512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.39 9.59 71.24 0.68 -1.71 16 2 C -0.14 -5.08 5.88 -19.82 -0.12 -5.19 16 3 C -0.15 -5.11 9.58 22.37 0.21 -4.90 16 4 C 0.11 4.19 5.87 38.27 0.22 4.42 16 5 C 0.15 7.26 3.35 38.39 0.13 7.39 16 6 C -0.19 -9.59 6.21 22.40 0.14 -9.45 16 7 C -0.11 -4.50 5.88 -19.84 -0.12 -4.62 16 8 C -0.10 -3.55 9.49 71.24 0.68 -2.87 16 9 N -0.51 -24.52 1.97 -509.78 -1.00 -25.53 16 10 C -0.31 -17.68 9.27 84.04 0.78 -16.90 16 11 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 12 C 0.04 2.39 3.69 84.85 0.31 2.70 16 13 N -0.91 -55.30 13.97 21.64 0.30 -55.00 16 14 Si 0.91 47.20 23.33 68.60 1.60 48.80 16 15 H -0.29 -14.91 7.11 99.48 0.71 -14.20 16 16 H -0.23 -11.53 4.16 99.48 0.41 -11.12 16 17 H -0.30 -16.07 7.11 99.48 0.71 -15.36 16 18 C 0.10 3.93 6.06 86.32 0.52 4.45 16 19 C 0.14 4.36 3.90 44.93 0.18 4.53 16 20 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 21 C -0.17 -5.75 9.25 71.98 0.67 -5.08 16 22 N -0.75 -23.42 5.50 -316.96 -1.74 -25.16 16 23 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.07 1.57 8.08 -2.39 -0.02 1.55 16 25 H 0.07 1.65 6.01 -2.38 -0.01 1.64 16 26 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 27 H 0.09 5.35 6.06 -2.91 -0.02 5.34 16 28 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.09 2.50 6.16 -2.39 -0.01 2.48 16 30 H 0.05 1.68 8.05 -2.39 -0.02 1.66 16 31 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 32 H 0.08 3.00 7.97 -2.39 -0.02 2.98 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.03 1.29 3.14 -2.38 -0.01 1.28 16 35 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.41 9.83 8.90 -92.71 -0.83 9.01 16 Total: -1.00 -67.97 278.81 3.40 -64.56 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -0.04 Total: 19.54 kcal Atomic # 6 Polarization: -31.50 SS G_CDS: 4.29 Total: -27.22 kcal Atomic # 7 Polarization: -103.24 SS G_CDS: -2.44 Total: -105.69 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 1.60 Total: 48.80 kcal Total: -67.97 3.40 -64.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076928462.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.236 kcal (2) G-P(sol) polarization free energy of solvation -67.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds