Wall clock time and date at job start Mon Mar 30 2020 05:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42896 * 109.47225 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99850 * 2 1 3 5 5 H 1.08000 * 119.99302 * 120.00101 * 4 2 1 6 6 C 1.37871 * 120.00436 * 299.72635 * 4 2 1 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47050 * 59.99579 * 8 6 4 10 10 H 1.48496 * 109.47289 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46492 * 299.99554 * 8 6 4 12 12 C 1.50696 * 109.47197 * 239.99810 * 2 1 3 13 13 C 1.38265 * 120.11744 * 270.00286 * 12 2 1 14 14 C 1.37932 * 119.77387 * 180.14517 * 13 12 2 15 15 C 1.38904 * 120.54465 * 0.03467 * 14 13 12 16 16 C 1.37663 * 119.68400 * 359.68092 * 15 14 13 17 17 C 1.37938 * 120.11349 * 89.73127 * 12 2 1 18 18 C 1.50627 * 122.55902 * 180.75707 * 16 15 14 19 19 C 1.52731 * 110.57979 * 341.89476 * 18 16 15 20 20 C 1.53327 * 108.38856 * 51.19594 * 19 18 16 21 21 C 1.50634 * 117.76162 * 179.31723 * 15 14 13 22 22 H 1.09005 * 109.47120 * 300.00252 * 1 2 3 23 23 H 1.09002 * 109.47051 * 59.99541 * 1 2 3 24 24 H 1.09002 * 109.47539 * 179.97438 * 1 2 3 25 25 H 0.96701 * 114.00155 * 179.97438 * 3 2 1 26 26 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 27 27 H 1.07998 * 120.11048 * 0.12093 * 13 12 2 28 28 H 1.08004 * 119.72317 * 180.02562 * 14 13 12 29 29 H 1.08001 * 119.72678 * 359.97438 * 17 12 2 30 30 H 1.09001 * 109.25959 * 102.18208 * 18 16 15 31 31 H 1.09005 * 109.25349 * 221.61688 * 18 16 15 32 32 H 1.09000 * 109.68210 * 170.91778 * 19 18 16 33 33 H 1.09000 * 109.68197 * 291.47022 * 19 18 16 34 34 H 1.08989 * 109.67612 * 49.92409 * 20 19 18 35 35 H 1.09001 * 109.67417 * 170.43182 * 20 19 18 36 36 H 1.08995 * 109.24764 * 282.66503 * 21 15 14 37 37 H 1.09005 * 109.24799 * 42.08553 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6531 -1.5885 1.1314 6 6 1.7038 -0.2361 2.4828 7 7 0.9526 0.8366 2.6034 8 14 2.3270 -1.1163 4.0080 9 1 3.8119 -1.1216 4.0045 10 1 1.8378 -0.4121 5.2205 11 1 1.8268 -2.5146 4.0115 12 6 2.0323 -0.7104 -1.2304 13 6 2.2635 -2.0732 -1.1988 14 6 2.7262 -2.7158 -2.3283 15 6 2.9627 -2.0049 -3.4979 16 6 2.7269 -0.6491 -3.5312 17 6 2.2577 -0.0043 -2.3937 18 6 2.9451 0.1816 -4.7686 19 6 3.8442 -0.5559 -5.7587 20 6 3.2761 -1.9640 -5.9719 21 6 3.4823 -2.7667 -4.6891 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 2.9703 1.4236 0.0004 26 1 0.7218 1.1706 3.4844 27 1 2.0829 -2.6326 -0.2928 28 1 2.9061 -3.7805 -2.3028 29 1 2.0723 1.0594 -2.4190 30 1 1.9832 0.3851 -5.2392 31 1 3.4150 1.1249 -4.4901 32 1 3.8626 -0.0199 -6.7076 33 1 4.8547 -0.6250 -5.3559 34 1 2.2117 -1.8999 -6.1977 35 1 3.7977 -2.4492 -6.7969 36 1 4.5461 -2.9622 -4.5544 37 1 2.9506 -3.7149 -4.7690 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085877855.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:27 Heat of formation + Delta-G solvation = -48.593029 kcal Electronic energy + Delta-G solvation = -17985.714019 eV Core-core repulsion = 15305.634247 eV Total energy + Delta-G solvation = -2680.079771 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.60055 -36.93819 -34.78744 -32.34421 -31.97731 -30.47065 -28.64993 -27.68198 -25.29001 -23.31971 -22.45186 -21.59743 -20.16246 -18.50867 -16.91054 -15.94732 -15.23425 -14.87338 -14.59988 -14.11840 -13.73511 -13.61676 -13.44313 -12.95935 -12.55601 -12.41426 -12.13252 -11.84667 -11.24963 -11.19363 -11.00927 -10.95323 -10.81447 -10.75146 -10.70258 -10.41084 -10.15947 -10.07264 -9.94373 -9.01086 -8.53159 -8.27802 -7.99765 -7.62784 -5.98278 -4.18407 2.08047 2.08647 3.28379 3.33814 3.35856 4.36087 4.46020 4.87932 4.91268 4.97479 5.24430 5.37126 5.42532 5.62751 5.69327 5.72010 5.72492 5.90736 5.93087 6.06224 6.08487 6.14369 6.15351 6.37636 6.39279 6.41985 6.73719 6.80396 6.94595 7.03978 7.22364 7.25571 7.41625 7.62009 7.77152 7.77416 8.01061 8.27138 8.81871 9.35641 9.58496 11.01530 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.038042 B = 0.006124 C = 0.005632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.848471 B = 4571.249211 C = 4970.134358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.282 3.718 3 O -0.558 6.558 4 C -0.560 4.560 5 H 0.061 0.939 6 C 0.081 3.919 7 N -0.857 5.857 8 Si 0.888 3.112 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 C -0.075 4.075 13 C -0.103 4.103 14 C -0.134 4.134 15 C -0.102 4.102 16 C -0.088 4.088 17 C -0.120 4.120 18 C -0.076 4.076 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.074 4.074 22 H 0.091 0.909 23 H 0.015 0.985 24 H 0.039 0.961 25 H 0.349 0.651 26 H 0.260 0.740 27 H 0.129 0.871 28 H 0.108 0.892 29 H 0.119 0.881 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.950 -4.270 -13.095 14.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.242 3.758 3 O -0.361 6.361 4 C -0.598 4.598 5 H 0.079 0.921 6 C -0.125 4.125 7 N -0.492 5.492 8 Si 0.716 3.284 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 C -0.076 4.076 13 C -0.121 4.121 14 C -0.152 4.152 15 C -0.102 4.102 16 C -0.088 4.088 17 C -0.138 4.138 18 C -0.113 4.113 19 C -0.155 4.155 20 C -0.155 4.155 21 C -0.111 4.111 22 H 0.110 0.890 23 H 0.034 0.966 24 H 0.058 0.942 25 H 0.193 0.807 26 H 0.070 0.930 27 H 0.146 0.854 28 H 0.127 0.873 29 H 0.137 0.863 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.190 -4.007 -12.962 13.937 hybrid contribution 0.937 -0.704 1.013 1.549 sum 4.127 -4.710 -11.949 13.491 Atomic orbital electron populations 1.21566 0.95137 0.99447 1.01244 1.17665 0.91534 0.79369 0.87197 1.86492 1.23800 1.28933 1.96848 1.21626 1.33874 1.13553 0.90710 0.92116 1.24999 0.94201 0.94398 0.98864 1.69995 1.34760 1.21265 1.23220 0.86744 0.79342 0.79877 0.82481 1.20217 1.21210 1.20168 1.21283 0.95139 0.94412 0.96728 1.21203 0.98203 0.95030 0.97652 1.21081 1.01929 0.98954 0.93209 1.19354 1.02558 0.93163 0.95103 1.19452 1.01146 0.93084 0.95168 1.21073 1.00471 1.00147 0.92144 1.20395 0.99688 0.97776 0.93453 1.21525 0.99384 0.95906 0.98692 1.21522 1.01192 0.95844 0.96975 1.20363 1.00527 0.97766 0.92404 0.89042 0.96610 0.94202 0.80745 0.92988 0.85367 0.87343 0.86313 0.91334 0.91227 0.92027 0.91843 0.91846 0.92092 0.91502 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.90 8.60 37.16 0.32 -2.58 16 2 C 0.28 7.02 0.82 -92.92 -0.08 6.94 16 3 O -0.56 -14.22 11.35 -35.23 -0.40 -14.62 16 4 C -0.56 -14.91 7.59 -34.44 -0.26 -15.17 16 5 H 0.06 1.59 6.04 -52.49 -0.32 1.27 16 6 C 0.08 2.20 5.24 -17.82 -0.09 2.10 16 7 N -0.86 -24.23 10.88 55.43 0.60 -23.63 16 8 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 C -0.08 -1.65 4.79 -104.72 -0.50 -2.15 16 13 C -0.10 -2.11 8.89 -39.68 -0.35 -2.46 16 14 C -0.13 -2.35 9.61 -39.45 -0.38 -2.73 16 15 C -0.10 -1.67 5.74 -104.62 -0.60 -2.27 16 16 C -0.09 -1.51 5.74 -104.62 -0.60 -2.11 16 17 C -0.12 -2.37 8.92 -39.44 -0.35 -2.72 16 18 C -0.08 -1.03 5.67 -28.06 -0.16 -1.19 16 19 C -0.12 -1.33 5.98 -26.70 -0.16 -1.49 16 20 C -0.12 -1.30 5.98 -26.70 -0.16 -1.46 16 21 C -0.07 -0.93 5.67 -28.05 -0.16 -1.09 16 22 H 0.09 2.50 6.09 -51.93 -0.32 2.18 16 23 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.35 8.08 9.03 45.56 0.41 8.49 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.13 2.69 6.45 -52.49 -0.34 2.36 16 28 H 0.11 1.63 8.05 -52.48 -0.42 1.21 16 29 H 0.12 2.33 7.47 -52.49 -0.39 1.94 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 34 H 0.06 0.72 8.10 -51.94 -0.42 0.30 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 LS Contribution 295.08 15.07 4.45 4.45 Total: -1.00 -28.90 295.08 -8.64 -37.54 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -4.73 Total: 8.84 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: -3.53 Total: -28.38 kcal Atomic # 7 Polarization: -24.23 SS G_CDS: 0.60 Total: -23.63 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.40 Total: -14.62 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.90 -8.64 -37.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085877855.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.051 kcal (2) G-P(sol) polarization free energy of solvation -28.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds