Wall clock time and date at job start Mon Mar 30 2020 05:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42896 * 109.47225 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99850 * 2 1 3 5 5 H 1.08000 * 119.99302 * 120.00101 * 4 2 1 6 6 C 1.37871 * 120.00436 * 299.72635 * 4 2 1 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47050 * 59.99579 * 8 6 4 10 10 H 1.48496 * 109.47289 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46492 * 299.99554 * 8 6 4 12 12 C 1.50696 * 109.47197 * 239.99810 * 2 1 3 13 13 C 1.38265 * 120.11744 * 270.00286 * 12 2 1 14 14 C 1.37932 * 119.77387 * 180.14517 * 13 12 2 15 15 C 1.38904 * 120.54465 * 0.03467 * 14 13 12 16 16 C 1.37663 * 119.68400 * 359.68092 * 15 14 13 17 17 C 1.37938 * 120.11349 * 89.73127 * 12 2 1 18 18 C 1.50627 * 122.55902 * 180.75707 * 16 15 14 19 19 C 1.52731 * 110.57979 * 341.89476 * 18 16 15 20 20 C 1.53327 * 108.38856 * 51.19594 * 19 18 16 21 21 C 1.50634 * 117.76162 * 179.31723 * 15 14 13 22 22 H 1.09005 * 109.47120 * 300.00252 * 1 2 3 23 23 H 1.09002 * 109.47051 * 59.99541 * 1 2 3 24 24 H 1.09002 * 109.47539 * 179.97438 * 1 2 3 25 25 H 0.96701 * 114.00155 * 179.97438 * 3 2 1 26 26 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 27 27 H 1.07998 * 120.11048 * 0.12093 * 13 12 2 28 28 H 1.08004 * 119.72317 * 180.02562 * 14 13 12 29 29 H 1.08001 * 119.72678 * 359.97438 * 17 12 2 30 30 H 1.09001 * 109.25959 * 102.18208 * 18 16 15 31 31 H 1.09005 * 109.25349 * 221.61688 * 18 16 15 32 32 H 1.09000 * 109.68210 * 170.91778 * 19 18 16 33 33 H 1.09000 * 109.68197 * 291.47022 * 19 18 16 34 34 H 1.08989 * 109.67612 * 49.92409 * 20 19 18 35 35 H 1.09001 * 109.67417 * 170.43182 * 20 19 18 36 36 H 1.08995 * 109.24764 * 282.66503 * 21 15 14 37 37 H 1.09005 * 109.24799 * 42.08553 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6531 -1.5885 1.1314 6 6 1.7038 -0.2361 2.4828 7 7 0.9526 0.8366 2.6034 8 14 2.3270 -1.1163 4.0080 9 1 3.8119 -1.1216 4.0045 10 1 1.8378 -0.4121 5.2205 11 1 1.8268 -2.5146 4.0115 12 6 2.0323 -0.7104 -1.2304 13 6 2.2635 -2.0732 -1.1988 14 6 2.7262 -2.7158 -2.3283 15 6 2.9627 -2.0049 -3.4979 16 6 2.7269 -0.6491 -3.5312 17 6 2.2577 -0.0043 -2.3937 18 6 2.9451 0.1816 -4.7686 19 6 3.8442 -0.5559 -5.7587 20 6 3.2761 -1.9640 -5.9719 21 6 3.4823 -2.7667 -4.6891 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 2.9703 1.4236 0.0004 26 1 0.7218 1.1706 3.4844 27 1 2.0829 -2.6326 -0.2928 28 1 2.9061 -3.7805 -2.3028 29 1 2.0723 1.0594 -2.4190 30 1 1.9832 0.3851 -5.2392 31 1 3.4150 1.1249 -4.4901 32 1 3.8626 -0.0199 -6.7076 33 1 4.8547 -0.6250 -5.3559 34 1 2.2117 -1.8999 -6.1977 35 1 3.7977 -2.4492 -6.7969 36 1 4.5461 -2.9622 -4.5544 37 1 2.9506 -3.7149 -4.7690 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085877855.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:27 Heat of formation + Delta-G solvation = -64.898842 kcal Electronic energy + Delta-G solvation = -17986.421092 eV Core-core repulsion = 15305.634247 eV Total energy + Delta-G solvation = -2680.786845 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.96903 -38.54423 -36.22917 -34.35354 -33.27740 -32.11435 -30.07504 -29.16879 -27.32821 -24.58460 -23.75859 -22.98037 -21.70794 -19.87657 -18.88205 -17.49404 -16.74112 -16.52116 -16.14072 -15.44947 -15.18217 -14.96909 -14.63433 -14.58693 -14.11837 -13.70966 -13.41749 -13.35839 -13.06929 -12.93208 -12.73677 -12.65189 -12.49268 -12.25893 -12.05668 -11.92880 -11.68562 -11.32770 -11.18557 -10.86480 -10.60534 -10.17487 -9.45987 -9.11634 -8.04240 -6.30638 0.61940 0.63639 1.41558 1.41728 1.49605 2.40807 2.96892 3.17764 3.83471 3.88022 4.07052 4.10575 4.19283 4.28737 4.41113 4.45367 4.66821 4.71082 4.72621 4.82085 4.89708 5.02321 5.06476 5.07331 5.15150 5.22998 5.23547 5.27953 5.45558 5.50704 5.52336 5.67014 5.75335 5.86952 5.94547 5.98087 6.25760 6.34407 6.76705 7.35434 7.56475 8.94591 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.038042 B = 0.006124 C = 0.005632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.848471 B = 4571.249211 C = 4970.134358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.274 3.726 3 O -0.572 6.572 4 C -0.569 4.569 5 H 0.059 0.941 6 C 0.033 3.967 7 N -0.888 5.888 8 Si 0.951 3.049 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.270 1.270 12 C -0.101 4.101 13 C -0.124 4.124 14 C -0.131 4.131 15 C -0.097 4.097 16 C -0.088 4.088 17 C -0.132 4.132 18 C -0.078 4.078 19 C -0.114 4.114 20 C -0.116 4.116 21 C -0.074 4.074 22 H 0.064 0.936 23 H 0.022 0.978 24 H 0.042 0.958 25 H 0.354 0.646 26 H 0.259 0.741 27 H 0.113 0.887 28 H 0.136 0.864 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.282 -5.769 -15.297 17.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.235 3.765 3 O -0.376 6.376 4 C -0.607 4.607 5 H 0.077 0.923 6 C -0.169 4.169 7 N -0.525 5.525 8 Si 0.776 3.224 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.195 1.195 12 C -0.102 4.102 13 C -0.142 4.142 14 C -0.149 4.149 15 C -0.097 4.097 16 C -0.088 4.088 17 C -0.150 4.150 18 C -0.115 4.115 19 C -0.152 4.152 20 C -0.153 4.153 21 C -0.111 4.111 22 H 0.083 0.917 23 H 0.041 0.959 24 H 0.061 0.939 25 H 0.199 0.801 26 H 0.068 0.932 27 H 0.131 0.869 28 H 0.154 0.846 29 H 0.128 0.872 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.528 -5.516 -15.174 16.768 hybrid contribution 0.531 -0.245 1.604 1.707 sum 5.059 -5.761 -13.570 15.586 Atomic orbital electron populations 1.21462 0.95893 0.99250 1.00140 1.17659 0.91211 0.79143 0.88475 1.86443 1.24385 1.29730 1.97030 1.21928 1.33500 1.13507 0.91740 0.92252 1.25739 0.94427 0.95070 1.01687 1.70139 1.36036 1.22709 1.23623 0.85749 0.78769 0.78902 0.78944 1.19834 1.21038 1.19494 1.20985 0.97738 0.95129 0.96337 1.21145 0.99988 0.94538 0.98498 1.21378 1.00602 1.00365 0.92522 1.19871 1.00640 0.93084 0.96133 1.19853 0.99523 0.93915 0.95486 1.21089 1.01401 0.99816 0.92685 1.20487 1.00857 0.97616 0.92555 1.21540 0.98534 0.96165 0.98940 1.21548 1.01485 0.95444 0.96853 1.20477 1.01237 0.98048 0.91348 0.91705 0.95913 0.93886 0.80116 0.93201 0.86887 0.84593 0.87162 0.90546 0.91059 0.89638 0.91933 0.92069 0.89354 0.90149 0.90028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.69 8.60 71.98 0.62 -5.07 16 2 C 0.27 14.12 0.82 -12.29 -0.01 14.11 16 3 O -0.57 -30.26 11.35 -148.98 -1.69 -31.96 16 4 C -0.57 -31.07 7.59 25.60 0.19 -30.88 16 5 H 0.06 3.18 6.04 -2.91 -0.02 3.16 16 6 C 0.03 1.84 5.24 84.65 0.44 2.28 16 7 N -0.89 -51.67 10.88 21.45 0.23 -51.43 16 8 Si 0.95 43.35 29.54 68.60 2.03 45.38 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 12 C -0.10 -4.54 4.79 -19.93 -0.10 -4.64 16 13 C -0.12 -5.10 8.89 22.20 0.20 -4.90 16 14 C -0.13 -4.37 9.61 22.36 0.21 -4.15 16 15 C -0.10 -2.94 5.74 -19.86 -0.11 -3.05 16 16 C -0.09 -2.85 5.74 -19.86 -0.11 -2.97 16 17 C -0.13 -5.23 8.92 22.36 0.20 -5.03 16 18 C -0.08 -1.93 5.67 29.74 0.17 -1.76 16 19 C -0.11 -2.13 5.98 30.61 0.18 -1.95 16 20 C -0.12 -2.03 5.98 30.61 0.18 -1.85 16 21 C -0.07 -1.57 5.67 29.74 0.17 -1.40 16 22 H 0.06 3.68 6.09 -2.38 -0.01 3.67 16 23 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.35 17.14 9.03 -74.06 -0.67 16.47 16 26 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 27 H 0.11 4.88 6.45 -2.91 -0.02 4.86 16 28 H 0.14 3.71 8.05 -2.91 -0.02 3.69 16 29 H 0.11 4.45 7.47 -2.91 -0.02 4.43 16 30 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.07 1.73 8.13 -2.38 -0.02 1.71 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 34 H 0.06 1.12 8.10 -2.39 -0.02 1.10 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 1.52 8.12 -2.38 -0.02 1.50 16 Total: -1.00 -63.10 295.08 3.20 -59.90 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: 0.39 Total: 29.36 kcal Atomic # 6 Polarization: -53.49 SS G_CDS: 2.24 Total: -51.26 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: 0.23 Total: -51.43 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -1.69 Total: -31.96 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -63.10 3.20 -59.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085877855.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.995 kcal (2) G-P(sol) polarization free energy of solvation -63.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds