Wall clock time and date at job start Mon Mar 30 2020 05:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30910 * 1 3 3 Si 1.86800 * 119.99997 * 2 1 4 4 H 1.48497 * 109.47035 * 240.27727 * 3 2 1 5 5 H 1.48502 * 109.47029 * 0.27321 * 3 2 1 6 6 H 1.48493 * 109.47254 * 120.27438 * 3 2 1 7 7 C 1.39867 * 120.00113 * 180.27501 * 2 1 3 8 8 H 1.07998 * 120.00368 * 161.92304 * 7 2 1 9 9 C 1.41133 * 119.99789 * 341.91729 * 7 2 1 10 10 C 1.40890 * 120.15910 * 335.36414 * 9 7 2 11 11 C 1.36336 * 119.83822 * 179.73865 * 10 9 7 12 12 C 1.39571 * 120.15760 * 0.56090 * 11 10 9 13 13 N 1.38861 * 119.83934 * 179.71514 * 12 11 10 14 14 C 1.46508 * 119.99957 * 359.97438 * 13 12 11 15 15 H 1.08998 * 110.66856 * 323.21977 * 14 13 12 16 16 C 1.54889 * 110.75463 * 86.45712 * 14 13 12 17 17 C 1.54265 * 104.19437 * 156.25835 * 16 14 13 18 18 C 1.53875 * 106.59682 * 336.38489 * 17 16 14 19 19 H 1.09001 * 110.03522 * 240.66793 * 18 17 16 20 20 N 1.46904 * 110.03130 * 119.28644 * 18 17 16 21 21 C 1.54265 * 106.60153 * 0.02562 * 18 17 16 22 22 C 1.39563 * 120.31968 * 359.69250 * 12 11 10 23 23 C 1.36343 * 120.15864 * 0.02562 * 22 12 11 24 24 H 0.96993 * 119.99485 * 359.72528 * 1 2 3 25 25 H 1.08003 * 120.07703 * 0.02562 * 10 9 7 26 26 H 1.07996 * 119.92345 * 180.27739 * 11 10 9 27 27 H 0.96994 * 120.00108 * 179.97438 * 13 12 11 28 28 H 1.09001 * 110.48342 * 274.93104 * 16 14 13 29 29 H 1.08997 * 110.48807 * 37.57722 * 16 14 13 30 30 H 1.09002 * 110.03685 * 95.66925 * 17 16 14 31 31 H 1.09002 * 110.02733 * 217.10594 * 17 16 14 32 32 H 1.00904 * 110.99682 * 61.45902 * 20 18 17 33 33 H 1.00905 * 110.99826 * 185.40592 * 20 18 17 34 34 H 1.09000 * 110.48820 * 264.93256 * 21 18 17 35 35 H 1.08995 * 110.49073 * 142.28932 * 21 18 17 36 36 H 1.07999 * 119.92173 * 180.02562 * 22 12 11 37 37 H 1.07998 * 120.07883 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0917 1.6993 -1.2159 5 1 1.2781 2.7464 0.0067 6 1 3.1018 1.6935 1.2091 7 6 2.0085 -1.2113 -0.0058 8 1 3.0485 -1.2330 -0.2961 9 6 1.3550 -2.4051 0.3678 10 6 0.2286 -2.3609 1.2129 11 6 -0.4008 -3.5177 1.5654 12 6 0.0753 -4.7447 1.1007 13 7 -0.5673 -5.9194 1.4687 14 6 -1.7418 -5.8689 2.3431 15 1 -1.6293 -5.0865 3.0937 16 6 -3.0334 -5.6543 1.5157 17 6 -4.1548 -6.2196 2.4115 18 6 -3.4903 -7.2307 3.3622 19 1 -3.9187 -8.2217 3.2121 20 7 -3.6771 -6.8081 4.7567 21 6 -1.9882 -7.2441 3.0114 22 6 1.1938 -4.7966 0.2676 23 6 1.8297 -3.6473 -0.0977 24 1 -0.4849 0.8400 0.0040 25 1 -0.1382 -1.4124 1.5768 26 1 -1.2671 -3.4851 2.2095 27 1 -0.2387 -6.7733 1.1468 28 1 -3.1940 -4.5927 1.3277 29 1 -2.9809 -6.2054 0.5767 30 1 -4.6160 -5.4154 2.9849 31 1 -4.9051 -6.7201 1.7993 32 1 -4.6569 -6.7724 4.9955 33 1 -3.1728 -7.4123 5.3882 34 1 -1.7665 -8.0518 2.3138 35 1 -1.3863 -7.3431 3.9146 36 1 1.5564 -5.7495 -0.0886 37 1 2.6949 -3.6889 -0.7428 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086398890.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:48 Heat of formation + Delta-G solvation = 12.280985 kcal Electronic energy + Delta-G solvation = -17342.350796 eV Core-core repulsion = 14697.203471 eV Total energy + Delta-G solvation = -2645.147325 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.86721 -37.39201 -34.62571 -32.99956 -31.41771 -29.39984 -28.96636 -27.71532 -25.82903 -24.00165 -21.39985 -20.59518 -19.73473 -19.43067 -17.15491 -16.50091 -15.94867 -15.38917 -15.11985 -14.88732 -14.19968 -13.65844 -13.37665 -12.90512 -12.60007 -12.10327 -12.02019 -11.89407 -11.48070 -11.24698 -11.12818 -11.00333 -10.95499 -10.92719 -10.66756 -10.45802 -10.30318 -9.64037 -9.21165 -9.15166 -8.77870 -8.44593 -7.42223 -6.58768 -6.31440 -3.97331 2.98071 3.16350 3.18031 3.21077 3.41609 4.09765 4.30580 4.39418 4.69519 4.76113 4.84830 5.24200 5.48013 5.50998 5.62648 5.76557 5.86956 5.91638 5.93344 6.12293 6.14019 6.33794 6.39195 6.47802 6.59699 7.00985 7.03621 7.08047 7.26519 7.30098 7.41858 7.63824 7.75876 7.91699 8.21402 8.36686 8.57490 8.78291 8.87630 9.11796 9.21952 10.42928 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.037823 B = 0.004778 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.122006 B = 5859.262043 C = 6284.525435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.075 3.925 3 Si 0.902 3.098 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.469 4.469 8 H 0.071 0.929 9 C 0.074 3.926 10 C -0.124 4.124 11 C -0.162 4.162 12 C 0.094 3.906 13 N -0.755 5.755 14 C 0.168 3.832 15 H 0.082 0.918 16 C -0.138 4.138 17 C -0.118 4.118 18 C 0.089 3.911 19 H 0.033 0.967 20 N -0.843 5.843 21 C -0.124 4.124 22 C -0.161 4.161 23 C -0.188 4.188 24 H 0.276 0.724 25 H 0.118 0.882 26 H 0.090 0.910 27 H 0.382 0.618 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.338 0.662 33 H 0.338 0.662 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.030 -10.997 5.848 14.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.500 4.500 8 H 0.090 0.910 9 C 0.071 3.929 10 C -0.144 4.144 11 C -0.184 4.184 12 C -0.003 4.003 13 N -0.389 5.389 14 C 0.061 3.939 15 H 0.100 0.900 16 C -0.178 4.178 17 C -0.157 4.157 18 C -0.023 4.023 19 H 0.051 0.949 20 N -0.373 5.373 21 C -0.162 4.162 22 C -0.183 4.183 23 C -0.208 4.208 24 H 0.087 0.913 25 H 0.135 0.865 26 H 0.108 0.892 27 H 0.214 0.786 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.990 -10.049 5.696 13.502 hybrid contribution -0.067 -0.486 -0.099 0.501 sum -7.057 -10.536 5.597 13.861 Atomic orbital electron populations 1.69854 1.07343 1.28652 1.37721 1.25782 0.94634 1.00809 0.92738 0.86479 0.80144 0.80941 0.79701 1.19313 1.20606 1.19105 1.19331 0.97930 0.91366 1.41355 0.91045 1.17483 0.92470 0.91949 0.90970 1.20942 0.98159 0.96453 0.98887 1.20130 1.01625 0.91885 1.04758 1.17359 0.95466 0.85767 1.01685 1.43911 1.32324 1.05673 1.56966 1.21469 0.84953 0.96019 0.91427 0.89978 1.22855 0.95068 1.01501 0.98392 1.22189 0.97937 0.98473 0.97057 1.21894 0.95821 0.95865 0.88717 0.94869 1.58833 1.16016 1.59372 1.03122 1.22613 0.94883 0.98102 1.00622 1.19802 0.98030 0.96985 1.03489 1.20527 1.02688 0.92648 1.04971 0.91320 0.86460 0.89233 0.78594 0.91275 0.91779 0.90894 0.92304 0.84909 0.84886 0.91429 0.91125 0.89724 0.89171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.89 10.97 55.54 0.61 -21.28 16 2 C 0.08 1.98 5.13 -17.34 -0.09 1.90 16 3 Si 0.90 19.58 29.60 -169.99 -5.03 14.55 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.47 -13.00 9.03 -37.87 -0.34 -13.35 16 8 H 0.07 1.91 7.91 -52.49 -0.41 1.50 16 9 C 0.07 2.05 5.57 -106.79 -0.60 1.46 16 10 C -0.12 -3.35 8.64 -39.26 -0.34 -3.68 16 11 C -0.16 -3.90 9.14 -39.77 -0.36 -4.27 16 12 C 0.09 2.10 6.67 -83.69 -0.56 1.54 16 13 N -0.76 -13.44 5.35 -50.12 -0.27 -13.71 16 14 C 0.17 2.62 2.80 -65.94 -0.18 2.44 16 15 H 0.08 1.46 6.63 -51.93 -0.34 1.12 16 16 C -0.14 -2.04 6.51 -25.07 -0.16 -2.21 16 17 C -0.12 -1.39 6.58 -25.61 -0.17 -1.56 16 18 C 0.09 0.95 4.03 -66.59 -0.27 0.68 16 19 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 20 N -0.84 -8.20 9.12 -3.72 -0.03 -8.23 16 21 C -0.12 -1.50 6.12 -25.08 -0.15 -1.65 16 22 C -0.16 -3.70 9.82 -39.77 -0.39 -4.09 16 23 C -0.19 -4.77 9.74 -39.26 -0.38 -5.16 16 24 H 0.28 6.86 8.30 -40.82 -0.34 6.53 16 25 H 0.12 3.27 6.17 -52.48 -0.32 2.95 16 26 H 0.09 2.01 6.23 -52.49 -0.33 1.68 16 27 H 0.38 6.05 8.52 -40.82 -0.35 5.71 16 28 H 0.07 1.15 8.11 -51.93 -0.42 0.73 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.88 7.92 -51.93 -0.41 0.47 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.34 2.70 9.06 -39.29 -0.36 2.35 16 33 H 0.34 2.79 8.92 -39.29 -0.35 2.44 16 34 H 0.07 0.76 8.01 -51.93 -0.42 0.34 16 35 H 0.07 0.85 7.94 -51.93 -0.41 0.44 16 36 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 300.39 15.07 4.53 4.53 Total: -1.00 -28.85 300.39 -9.57 -38.42 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -5.37 Total: 13.68 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: -4.00 Total: -27.96 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.31 Total: -43.22 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.85 -9.57 -38.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086398890.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.698 kcal (2) G-P(sol) polarization free energy of solvation -28.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds