Wall clock time and date at job start Mon Mar 30 2020 05:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30910 * 1 3 3 Si 1.86800 * 119.99997 * 2 1 4 4 H 1.48497 * 109.47035 * 240.27727 * 3 2 1 5 5 H 1.48502 * 109.47029 * 0.27321 * 3 2 1 6 6 H 1.48493 * 109.47254 * 120.27438 * 3 2 1 7 7 C 1.39867 * 120.00113 * 180.27501 * 2 1 3 8 8 H 1.07998 * 120.00368 * 161.92304 * 7 2 1 9 9 C 1.41133 * 119.99789 * 341.91729 * 7 2 1 10 10 C 1.40890 * 120.15910 * 335.36414 * 9 7 2 11 11 C 1.36336 * 119.83822 * 179.73865 * 10 9 7 12 12 C 1.39571 * 120.15760 * 0.56090 * 11 10 9 13 13 N 1.38861 * 119.83934 * 179.71514 * 12 11 10 14 14 C 1.46508 * 119.99957 * 359.97438 * 13 12 11 15 15 H 1.08998 * 110.66856 * 323.21977 * 14 13 12 16 16 C 1.54889 * 110.75463 * 86.45712 * 14 13 12 17 17 C 1.54265 * 104.19437 * 156.25835 * 16 14 13 18 18 C 1.53875 * 106.59682 * 336.38489 * 17 16 14 19 19 H 1.09001 * 110.03522 * 240.66793 * 18 17 16 20 20 N 1.46904 * 110.03130 * 119.28644 * 18 17 16 21 21 C 1.54265 * 106.60153 * 0.02562 * 18 17 16 22 22 C 1.39563 * 120.31968 * 359.69250 * 12 11 10 23 23 C 1.36343 * 120.15864 * 0.02562 * 22 12 11 24 24 H 0.96993 * 119.99485 * 359.72528 * 1 2 3 25 25 H 1.08003 * 120.07703 * 0.02562 * 10 9 7 26 26 H 1.07996 * 119.92345 * 180.27739 * 11 10 9 27 27 H 0.96994 * 120.00108 * 179.97438 * 13 12 11 28 28 H 1.09001 * 110.48342 * 274.93104 * 16 14 13 29 29 H 1.08997 * 110.48807 * 37.57722 * 16 14 13 30 30 H 1.09002 * 110.03685 * 95.66925 * 17 16 14 31 31 H 1.09002 * 110.02733 * 217.10594 * 17 16 14 32 32 H 1.00904 * 110.99682 * 61.45902 * 20 18 17 33 33 H 1.00905 * 110.99826 * 185.40592 * 20 18 17 34 34 H 1.09000 * 110.48820 * 264.93256 * 21 18 17 35 35 H 1.08995 * 110.49073 * 142.28932 * 21 18 17 36 36 H 1.07999 * 119.92173 * 180.02562 * 22 12 11 37 37 H 1.07998 * 120.07883 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0917 1.6993 -1.2159 5 1 1.2781 2.7464 0.0067 6 1 3.1018 1.6935 1.2091 7 6 2.0085 -1.2113 -0.0058 8 1 3.0485 -1.2330 -0.2961 9 6 1.3550 -2.4051 0.3678 10 6 0.2286 -2.3609 1.2129 11 6 -0.4008 -3.5177 1.5654 12 6 0.0753 -4.7447 1.1007 13 7 -0.5673 -5.9194 1.4687 14 6 -1.7418 -5.8689 2.3431 15 1 -1.6293 -5.0865 3.0937 16 6 -3.0334 -5.6543 1.5157 17 6 -4.1548 -6.2196 2.4115 18 6 -3.4903 -7.2307 3.3622 19 1 -3.9187 -8.2217 3.2121 20 7 -3.6771 -6.8081 4.7567 21 6 -1.9882 -7.2441 3.0114 22 6 1.1938 -4.7966 0.2676 23 6 1.8297 -3.6473 -0.0977 24 1 -0.4849 0.8400 0.0040 25 1 -0.1382 -1.4124 1.5768 26 1 -1.2671 -3.4851 2.2095 27 1 -0.2387 -6.7733 1.1468 28 1 -3.1940 -4.5927 1.3277 29 1 -2.9809 -6.2054 0.5767 30 1 -4.6160 -5.4154 2.9849 31 1 -4.9051 -6.7201 1.7993 32 1 -4.6569 -6.7724 4.9955 33 1 -3.1728 -7.4123 5.3882 34 1 -1.7665 -8.0518 2.3138 35 1 -1.3863 -7.3431 3.9146 36 1 1.5564 -5.7495 -0.0886 37 1 2.6949 -3.6889 -0.7428 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086398890.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:48 Heat of formation + Delta-G solvation = -6.190073 kcal Electronic energy + Delta-G solvation = -17343.151761 eV Core-core repulsion = 14697.203471 eV Total energy + Delta-G solvation = -2645.948290 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.23125 -38.98617 -36.24225 -34.66179 -32.65812 -31.34102 -30.54749 -29.02292 -27.09644 -25.77841 -23.15738 -22.31324 -20.98007 -20.66132 -19.14371 -17.99212 -17.23132 -16.74126 -16.43873 -16.08393 -15.79466 -15.19980 -14.73032 -14.39817 -14.38128 -13.83866 -13.68426 -13.60928 -12.90829 -12.73039 -12.68170 -12.41356 -12.26992 -12.14056 -12.01539 -11.96613 -11.57736 -11.54904 -11.14280 -11.02171 -10.24036 -9.51368 -9.39106 -8.54026 -8.13650 -5.99380 1.12643 1.20070 1.40185 1.51422 1.61018 2.28101 2.85148 2.90830 3.60815 3.69666 3.76103 3.88334 4.20849 4.42233 4.49330 4.52191 4.55300 4.60065 4.64969 4.88896 4.97092 5.04271 5.10504 5.12810 5.17111 5.27669 5.33471 5.39928 5.47448 5.71836 5.83741 5.98503 6.20148 6.35866 6.40875 6.67732 6.69314 6.89902 7.09392 7.17966 7.36731 8.49421 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.037823 B = 0.004778 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.122006 B = 5859.262043 C = 6284.525435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.032 3.968 3 Si 0.977 3.023 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.263 1.263 7 C -0.508 4.508 8 H 0.069 0.931 9 C 0.035 3.965 10 C -0.145 4.145 11 C -0.173 4.173 12 C 0.114 3.886 13 N -0.744 5.744 14 C 0.160 3.840 15 H 0.057 0.943 16 C -0.137 4.137 17 C -0.112 4.112 18 C 0.095 3.905 19 H 0.057 0.943 20 N -0.855 5.855 21 C -0.114 4.114 22 C -0.166 4.166 23 C -0.196 4.196 24 H 0.282 0.718 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.396 0.604 28 H 0.040 0.960 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.349 0.651 33 H 0.348 0.652 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.538 -12.888 6.305 16.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.180 4.180 3 Si 0.798 3.202 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.187 1.187 7 C -0.539 4.539 8 H 0.087 0.913 9 C 0.032 3.968 10 C -0.165 4.165 11 C -0.195 4.195 12 C 0.014 3.986 13 N -0.377 5.377 14 C 0.054 3.946 15 H 0.075 0.925 16 C -0.177 4.177 17 C -0.151 4.151 18 C -0.017 4.017 19 H 0.075 0.925 20 N -0.388 5.388 21 C -0.153 4.153 22 C -0.189 4.189 23 C -0.216 4.216 24 H 0.092 0.908 25 H 0.115 0.885 26 H 0.117 0.883 27 H 0.231 0.769 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.163 0.837 33 H 0.162 0.838 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.137 0.863 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.521 -11.996 6.169 15.445 hybrid contribution 0.015 -0.073 -0.207 0.220 sum -7.506 -12.070 5.962 15.413 Atomic orbital electron populations 1.69927 1.08828 1.29829 1.38540 1.26625 0.95425 1.04137 0.91788 0.85345 0.78764 0.76250 0.79831 1.18538 1.19462 1.18749 1.19582 0.98110 0.92744 1.43495 0.91328 1.17809 0.93549 0.93121 0.92305 1.20859 0.99025 0.96611 1.00000 1.20227 1.01953 0.92038 1.05248 1.17460 0.94705 0.86693 0.99699 1.43947 1.32433 1.04771 1.56555 1.21608 0.84278 0.97867 0.90854 0.92493 1.22783 0.95924 0.99975 0.99029 1.22153 0.97212 0.98754 0.96955 1.21813 0.94499 0.96490 0.88883 0.92515 1.58778 1.17140 1.59938 1.02958 1.22570 0.96147 0.95858 1.00679 1.20113 0.97858 0.97691 1.03203 1.20757 1.03069 0.92850 1.04955 0.90795 0.88541 0.88318 0.76895 0.94138 0.91664 0.91470 0.90385 0.83704 0.83796 0.89750 0.90842 0.86300 0.88447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.37 10.97 21.82 0.24 -47.13 16 2 C 0.03 1.73 5.13 85.22 0.44 2.17 16 3 Si 0.98 41.01 29.60 68.60 2.03 43.04 16 4 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 7 C -0.51 -29.29 9.03 23.38 0.21 -29.08 16 8 H 0.07 3.81 7.91 -2.91 -0.02 3.79 16 9 C 0.03 2.01 5.57 -21.27 -0.12 1.89 16 10 C -0.14 -8.13 8.64 22.48 0.19 -7.94 16 11 C -0.17 -8.49 9.14 22.15 0.20 -8.29 16 12 C 0.11 4.99 6.67 38.67 0.26 5.25 16 13 N -0.74 -25.01 5.35 -312.48 -1.67 -26.68 16 14 C 0.16 4.74 2.80 46.27 0.13 4.87 16 15 H 0.06 2.00 6.63 -2.39 -0.02 1.99 16 16 C -0.14 -3.89 6.51 31.67 0.21 -3.69 16 17 C -0.11 -2.38 6.58 31.32 0.21 -2.17 16 18 C 0.09 1.70 4.03 45.64 0.18 1.89 16 19 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 20 N -0.86 -14.31 9.12 -165.67 -1.51 -15.82 16 21 C -0.11 -2.40 6.12 31.66 0.19 -2.21 16 22 C -0.17 -7.47 9.82 22.15 0.22 -7.25 16 23 C -0.20 -10.07 9.74 22.48 0.22 -9.85 16 24 H 0.28 14.45 8.30 -92.71 -0.77 13.68 16 25 H 0.10 5.71 6.17 -2.91 -0.02 5.70 16 26 H 0.10 4.56 6.23 -2.91 -0.02 4.55 16 27 H 0.40 11.30 8.52 -92.71 -0.79 10.51 16 28 H 0.04 1.36 8.11 -2.39 -0.02 1.34 16 29 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.07 1.51 7.92 -2.39 -0.02 1.49 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.35 4.63 9.06 -89.69 -0.81 3.82 16 33 H 0.35 4.74 8.92 -89.69 -0.80 3.94 16 34 H 0.08 1.53 8.01 -2.39 -0.02 1.51 16 35 H 0.07 1.54 7.94 -2.39 -0.02 1.52 16 36 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 37 H 0.10 4.72 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -64.37 300.39 0.32 -64.05 By element: Atomic # 1 Polarization: 38.26 SS G_CDS: -1.31 Total: 36.96 kcal Atomic # 6 Polarization: -56.95 SS G_CDS: 2.54 Total: -54.41 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -2.94 Total: -89.63 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -64.37 0.32 -64.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086398890.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.860 kcal (2) G-P(sol) polarization free energy of solvation -64.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds