Wall clock time and date at job start Mon Mar 30 2020 05:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00156 * 2 1 4 4 H 1.48496 * 109.47481 * 273.94500 * 3 2 1 5 5 H 1.48499 * 109.47115 * 33.94552 * 3 2 1 6 6 H 1.48504 * 109.47078 * 153.93944 * 3 2 1 7 7 C 1.37880 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00309 * 354.12325 * 7 2 1 9 9 C 1.50700 * 119.99915 * 174.11486 * 7 2 1 10 10 H 1.09004 * 109.47071 * 335.36089 * 9 7 2 11 11 N 1.46902 * 109.46733 * 95.35890 * 9 7 2 12 12 C 1.50701 * 109.47434 * 215.36085 * 9 7 2 13 13 C 1.38284 * 119.92154 * 100.00302 * 12 9 7 14 14 C 1.38106 * 120.07075 * 179.97438 * 13 12 9 15 15 C 1.38911 * 119.92357 * 359.97438 * 14 13 12 16 16 N 1.39675 * 120.07446 * 179.97438 * 15 14 13 17 17 C 1.48533 * 110.99944 * 295.44327 * 16 15 14 18 18 C 1.54944 * 103.22845 * 159.71822 * 17 16 15 19 19 C 1.54598 * 102.92031 * 322.58707 * 18 17 16 20 20 C 1.47908 * 111.00009 * 52.83922 * 16 15 14 21 21 C 1.38908 * 119.85557 * 359.97438 * 15 14 13 22 22 C 1.38109 * 119.92009 * 0.02562 * 21 15 14 23 23 H 0.96997 * 119.99579 * 359.97438 * 1 2 3 24 24 H 1.00894 * 111.00136 * 297.99805 * 11 9 7 25 25 H 1.00906 * 110.99696 * 61.95627 * 11 9 7 26 26 H 1.07992 * 119.96854 * 0.24974 * 13 12 9 27 27 H 1.07998 * 120.04033 * 180.02562 * 14 13 12 28 28 H 1.08997 * 110.66469 * 278.14910 * 17 16 15 29 29 H 1.08999 * 110.66544 * 41.28691 * 17 16 15 30 30 H 1.08998 * 110.72679 * 204.22841 * 18 17 16 31 31 H 1.09000 * 110.72253 * 80.94240 * 18 17 16 32 32 H 1.09000 * 110.30639 * 263.04020 * 19 18 17 33 33 H 1.09000 * 110.30787 * 140.87511 * 19 18 17 34 34 H 1.09001 * 109.91599 * 333.50777 * 20 16 15 35 35 H 1.08995 * 109.91944 * 94.60547 * 20 16 15 36 36 H 1.07998 * 120.04351 * 179.97438 * 21 15 14 37 37 H 1.08007 * 119.95893 * 180.02562 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4133 2.0946 -1.3967 5 1 1.4909 2.6271 0.7818 6 1 3.5859 1.4174 0.6151 7 6 2.0045 -1.1941 0.0005 8 1 1.4688 -2.1269 0.0967 9 6 3.5056 -1.1977 -0.1333 10 1 3.8273 -0.2878 -0.6400 11 7 4.1159 -1.2567 1.2016 12 6 3.9356 -2.3985 -0.9359 13 6 4.2443 -2.2576 -2.2764 14 6 4.6392 -3.3559 -3.0147 15 6 4.7266 -4.6030 -2.4091 16 7 5.1252 -5.7160 -3.1529 17 6 4.1377 -6.0255 -4.2184 18 6 4.9534 -6.8809 -5.2202 19 6 6.3466 -6.2115 -5.1920 20 6 6.4034 -5.4572 -3.8506 21 6 4.4168 -4.7408 -1.0620 22 6 4.0225 -3.6382 -0.3296 23 1 -0.4849 0.8401 0.0004 24 1 3.8690 -0.4454 1.7483 25 1 3.8583 -2.1071 1.6797 26 1 4.1809 -1.2870 -2.7455 27 1 4.8806 -3.2453 -4.0615 28 1 3.3027 -6.5981 -3.8144 29 1 3.7841 -5.1101 -4.6929 30 1 4.5188 -6.8252 -6.2182 31 1 5.0157 -7.9155 -4.8826 32 1 6.4478 -5.5135 -6.0231 33 1 7.1306 -6.9676 -5.2344 34 1 6.5185 -4.3882 -4.0304 35 1 7.2354 -5.8242 -3.2498 36 1 4.4833 -5.7089 -0.5881 37 1 3.7818 -3.7446 0.7180 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095780699.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:39 Heat of formation + Delta-G solvation = 30.109140 kcal Electronic energy + Delta-G solvation = -17525.338820 eV Core-core repulsion = 14880.964582 eV Total energy + Delta-G solvation = -2644.374238 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.89967 -37.75983 -34.70959 -32.28074 -31.44611 -30.38626 -28.88503 -27.92671 -25.99722 -23.17326 -21.96964 -21.17054 -20.88837 -19.46130 -17.17882 -17.02051 -15.98322 -15.46768 -14.61665 -14.39235 -14.19165 -13.97960 -13.46370 -13.05682 -12.84013 -12.77510 -12.72935 -12.03438 -11.90556 -11.70782 -11.44791 -11.28761 -11.12437 -10.98262 -10.69114 -10.59308 -10.47026 -9.96544 -9.55113 -8.81787 -8.43524 -8.32216 -7.96216 -7.34880 -6.24958 -4.27602 1.92245 2.03162 3.17467 3.27700 3.30606 4.06582 4.26179 4.33943 4.63121 4.76275 4.89572 5.10784 5.27937 5.38616 5.44574 5.50749 5.64951 5.68809 5.69592 5.74700 5.93247 5.94792 6.03961 6.08063 6.15637 6.21085 6.35415 6.52323 6.74456 6.83866 6.98984 7.07323 7.32961 7.43119 7.52558 7.82790 8.21944 8.33098 8.53943 8.82478 9.36720 10.87531 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.039014 B = 0.005168 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.523751 B = 5416.527538 C = 5518.382910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.077 3.923 3 Si 0.872 3.128 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.256 1.256 7 C -0.545 4.545 8 H 0.074 0.926 9 C 0.207 3.793 10 H 0.050 0.950 11 N -0.853 5.853 12 C -0.016 4.016 13 C -0.116 4.116 14 C -0.148 4.148 15 C 0.045 3.955 16 N -0.478 5.478 17 C 0.038 3.962 18 C -0.123 4.123 19 C -0.131 4.131 20 C 0.035 3.965 21 C -0.094 4.094 22 C -0.108 4.108 23 H 0.266 0.734 24 H 0.330 0.670 25 H 0.325 0.675 26 H 0.114 0.886 27 H 0.109 0.891 28 H 0.082 0.918 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.640 -9.550 -7.861 16.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.180 1.180 7 C -0.584 4.584 8 H 0.092 0.908 9 C 0.098 3.902 10 H 0.068 0.932 11 N -0.382 5.382 12 C -0.017 4.017 13 C -0.135 4.135 14 C -0.168 4.168 15 C -0.049 4.049 16 N -0.199 5.199 17 C -0.089 4.089 18 C -0.161 4.161 19 C -0.169 4.169 20 C -0.092 4.092 21 C -0.113 4.113 22 C -0.127 4.127 23 H 0.076 0.924 24 H 0.141 0.859 25 H 0.137 0.863 26 H 0.132 0.868 27 H 0.127 0.873 28 H 0.101 0.899 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.136 0.864 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.237 -9.855 -7.891 16.901 hybrid contribution -0.925 1.682 -0.306 1.944 sum 10.312 -8.173 -8.197 15.502 Atomic orbital electron populations 1.69932 1.06427 1.27252 1.48919 1.25100 0.94735 0.99168 0.93749 0.86916 0.80782 0.83598 0.78815 1.20213 1.21204 1.18020 1.21620 0.90166 0.94994 1.51643 0.90800 1.18446 0.92911 0.91598 0.87233 0.93193 1.59647 1.65771 1.06764 1.05997 1.20170 0.91989 0.95857 0.93691 1.20817 1.00376 0.98122 0.94201 1.21349 1.02709 0.93651 0.99075 1.18711 1.03598 0.88762 0.93794 1.62358 1.02412 1.34141 1.21033 1.23329 0.95412 0.98892 0.91230 1.22491 0.95038 0.99763 0.98858 1.22406 0.97916 0.99572 0.97017 1.22985 0.92924 0.99282 0.93959 1.20835 0.99504 0.98467 0.92466 1.20843 1.00068 0.91951 0.99802 0.92424 0.85887 0.86313 0.86757 0.87338 0.89939 0.93220 0.91138 0.90781 0.91620 0.91107 0.93046 0.90428 0.86362 0.86202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 20.54 26.61 -169.99 -4.52 16.02 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.26 -5.72 6.20 56.52 0.35 -5.37 16 7 C -0.54 -14.75 9.12 -34.44 -0.31 -15.07 16 8 H 0.07 2.22 8.06 -52.49 -0.42 1.80 16 9 C 0.21 4.81 2.48 -70.01 -0.17 4.63 16 10 H 0.05 1.19 5.50 -51.93 -0.29 0.91 16 11 N -0.85 -17.90 9.07 -6.65 -0.06 -17.96 16 12 C -0.02 -0.35 4.94 -104.59 -0.52 -0.86 16 13 C -0.12 -2.28 9.66 -39.61 -0.38 -2.66 16 14 C -0.15 -2.56 7.92 -39.38 -0.31 -2.87 16 15 C 0.05 0.76 4.86 -83.79 -0.41 0.35 16 16 N -0.48 -6.90 5.28 -167.16 -0.88 -7.79 16 17 C 0.04 0.48 6.43 -1.89 -0.01 0.47 16 18 C -0.12 -1.21 7.06 -24.87 -0.18 -1.39 16 19 C -0.13 -1.26 6.93 -25.37 -0.18 -1.44 16 20 C 0.04 0.43 6.48 -2.75 -0.02 0.42 16 21 C -0.09 -1.65 9.97 -39.38 -0.39 -2.04 16 22 C -0.11 -2.08 9.27 -39.61 -0.37 -2.45 16 23 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.33 6.88 7.94 -39.29 -0.31 6.57 16 25 H 0.33 6.40 7.26 -39.29 -0.29 6.11 16 26 H 0.11 2.15 8.03 -52.49 -0.42 1.73 16 27 H 0.11 1.65 7.03 -52.49 -0.37 1.28 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.66 7.12 -51.93 -0.37 0.29 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.66 6.20 -51.93 -0.32 0.34 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 37 H 0.12 2.21 6.62 -52.48 -0.35 1.86 16 LS Contribution 294.91 15.07 4.44 4.44 Total: -1.00 -29.43 294.91 -8.87 -38.30 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -5.28 Total: 13.47 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -3.35 Total: -20.87 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -0.17 Total: -51.36 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.52 Total: 16.02 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.43 -8.87 -38.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095780699.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.410 kcal (2) G-P(sol) polarization free energy of solvation -29.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds