Wall clock time and date at job start Mon Mar 30 2020 05:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86800 * 120.00376 * 2 1 4 4 H 1.48500 * 109.47319 * 267.06848 * 3 2 1 5 5 H 1.48509 * 109.46978 * 27.06672 * 3 2 1 6 6 H 1.48498 * 109.47446 * 147.06488 * 3 2 1 7 7 C 1.39891 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99491 * 342.34288 * 7 2 1 9 9 C 1.41023 * 120.00093 * 162.34006 * 7 2 1 10 10 C 1.40667 * 120.26953 * 329.61787 * 9 7 2 11 11 C 1.38005 * 119.76959 * 179.97438 * 10 9 7 12 12 N 1.39861 * 119.83722 * 179.97438 * 11 10 9 13 13 C 1.46847 * 110.99863 * 180.02562 * 12 11 10 14 14 C 1.53037 * 109.52100 * 185.84079 * 13 12 11 15 15 C 1.53114 * 109.27846 * 300.81712 * 14 13 12 16 16 C 1.53127 * 109.21133 * 57.62384 * 15 14 13 17 17 C 1.46850 * 110.99734 * 304.20857 * 12 11 10 18 18 C 1.39599 * 120.32385 * 0.25765 * 11 10 9 19 19 C 1.38061 * 120.54462 * 359.47876 * 18 11 10 20 20 C 1.38730 * 120.22111 * 0.52048 * 19 18 11 21 21 N 1.38872 * 120.16389 * 179.71755 * 20 19 18 22 22 H 0.97000 * 119.99793 * 359.97438 * 1 2 3 23 23 H 1.07996 * 120.11357 * 359.97438 * 10 9 7 24 24 H 1.09003 * 109.46050 * 65.82148 * 13 12 11 25 25 H 1.09000 * 109.45163 * 305.85143 * 13 12 11 26 26 H 1.08999 * 109.49936 * 180.88171 * 14 13 12 27 27 H 1.08996 * 109.53729 * 60.78229 * 14 13 12 28 28 H 1.08997 * 109.52765 * 177.55942 * 15 14 13 29 29 H 1.09003 * 109.52400 * 297.69369 * 15 14 13 30 30 H 1.08995 * 109.50007 * 62.32193 * 16 15 14 31 31 H 1.09001 * 109.50466 * 182.43435 * 16 15 14 32 32 H 1.08995 * 109.46505 * 294.17324 * 17 12 11 33 33 H 1.08997 * 109.46017 * 54.16107 * 17 12 11 34 34 H 1.08000 * 119.72654 * 179.72196 * 18 11 10 35 35 H 1.08002 * 119.88421 * 180.25773 * 19 18 11 36 36 H 0.96996 * 119.99796 * 185.33422 * 21 20 19 37 37 H 0.97001 * 119.99493 * 5.34092 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.5527 2.0106 -1.3982 5 1 1.4109 2.6698 0.6371 6 1 3.5082 1.4588 0.7612 7 6 2.0084 -1.2115 -0.0005 8 1 1.5065 -2.1248 0.2828 9 6 3.3688 -1.2401 -0.3711 10 6 3.8700 -0.3117 -1.3014 11 6 5.2032 -0.3487 -1.6562 12 7 5.7029 0.5734 -2.5815 13 6 7.1366 0.3591 -2.8161 14 6 7.6790 1.4708 -3.7173 15 6 6.9182 1.4608 -5.0460 16 6 5.4220 1.6364 -4.7713 17 6 4.9457 0.5204 -3.8386 18 6 6.0541 -1.3058 -1.1005 19 6 5.5774 -2.2198 -0.1822 20 6 4.2412 -2.2031 0.1907 21 7 3.7617 -3.1268 1.1101 22 1 -0.4850 0.8401 0.0004 23 1 3.2138 0.4275 -1.7365 24 1 7.2850 -0.6060 -3.3005 25 1 7.6663 0.3727 -1.8636 26 1 8.7396 1.3028 -3.9040 27 1 7.5440 2.4352 -3.2278 28 1 7.2716 2.2784 -5.6743 29 1 7.0861 0.5116 -5.5548 30 1 5.2499 2.6033 -4.2986 31 1 4.8713 1.5868 -5.7106 32 1 5.1049 -0.4455 -4.3180 33 1 3.8842 0.6513 -3.6289 34 1 7.0947 -1.3288 -1.3884 35 1 6.2461 -2.9530 0.2441 36 1 2.8135 -3.1637 1.3111 37 1 4.3751 -3.7351 1.5513 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166372438.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:41 Heat of formation + Delta-G solvation = -0.642223 kcal Electronic energy + Delta-G solvation = -18134.020422 eV Core-core repulsion = 15488.312705 eV Total energy + Delta-G solvation = -2645.707717 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.92342 -38.94589 -35.64671 -35.30323 -32.98546 -32.49237 -31.55397 -28.56872 -26.76682 -24.95153 -24.38108 -22.70432 -21.50312 -20.52916 -19.17643 -18.19072 -17.52347 -16.99883 -16.47894 -15.86834 -15.59949 -15.09261 -14.96628 -14.78623 -14.49971 -14.24229 -13.99260 -13.79479 -13.46452 -13.11131 -12.79109 -12.58744 -12.45154 -12.13700 -11.86177 -11.73694 -11.59970 -11.35430 -11.24329 -11.11489 -10.78205 -9.59707 -9.43241 -8.81284 -7.85120 -6.21449 0.84392 1.02620 1.30895 1.40212 1.50141 2.16522 2.67066 3.03569 3.56750 3.62276 3.89448 3.96926 4.07662 4.28260 4.36455 4.43387 4.55073 4.61784 4.67818 4.85677 4.87129 4.92835 4.94826 5.03926 5.11531 5.20471 5.25656 5.37261 5.42500 5.49244 5.60149 5.70294 5.84494 6.08395 6.27001 6.41625 6.66127 6.73735 6.91265 7.18043 7.48129 8.27433 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021896 B = 0.008884 C = 0.006907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.492359 B = 3150.862699 C = 4052.837398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.052 3.948 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.474 4.474 8 H 0.065 0.935 9 C 0.032 3.968 10 C -0.238 4.238 11 C 0.080 3.920 12 N -0.502 5.502 13 C 0.053 3.947 14 C -0.114 4.114 15 C -0.115 4.115 16 C -0.115 4.115 17 C 0.058 3.942 18 C -0.217 4.217 19 C -0.162 4.162 20 C 0.113 3.887 21 N -0.873 5.873 22 H 0.287 0.713 23 H 0.094 0.906 24 H 0.041 0.959 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.034 0.966 33 H 0.050 0.950 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.393 0.607 37 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.224 1.841 -6.706 14.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.160 4.160 3 Si 0.790 3.210 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.505 4.505 8 H 0.083 0.917 9 C 0.026 3.974 10 C -0.260 4.260 11 C -0.017 4.017 12 N -0.219 5.219 13 C -0.073 4.073 14 C -0.151 4.151 15 C -0.153 4.153 16 C -0.152 4.152 17 C -0.068 4.068 18 C -0.239 4.239 19 C -0.186 4.186 20 C 0.009 3.991 21 N -0.415 5.415 22 H 0.098 0.902 23 H 0.111 0.889 24 H 0.059 0.941 25 H 0.094 0.906 26 H 0.110 0.890 27 H 0.081 0.919 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.221 0.779 37 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 12.925 2.482 -6.590 14.719 hybrid contribution -0.548 -0.398 0.300 0.741 sum 12.377 2.085 -6.290 14.039 Atomic orbital electron populations 1.69750 1.08635 1.30647 1.39780 1.26499 0.95094 1.03252 0.91153 0.85576 0.78435 0.77867 0.79090 1.19379 1.21264 1.19267 1.19039 0.93913 0.95178 1.42334 0.91684 1.17432 0.92935 0.93395 0.93599 1.20610 0.95127 1.05328 1.04944 1.18581 0.93169 0.92487 0.97487 1.59222 1.04712 1.47963 1.10035 1.22265 0.86593 0.98243 1.00242 1.21632 1.00103 0.98229 0.95166 1.21573 0.93811 1.02696 0.97195 1.21637 0.97565 0.97633 0.98411 1.22176 0.97186 0.98577 0.88887 1.20746 0.99507 0.98432 1.05264 1.20307 0.93360 1.02350 1.02597 1.18095 0.92559 0.94243 0.94203 1.41868 1.10784 1.40472 1.48357 0.90233 0.88857 0.94116 0.90552 0.89029 0.91886 0.89738 0.91692 0.92022 0.89904 0.94740 0.93104 0.85333 0.85597 0.77904 0.77470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.58 13.93 21.82 0.30 -48.28 16 2 C 0.05 2.91 5.41 85.23 0.46 3.38 16 3 Si 0.96 47.12 24.67 68.60 1.69 48.81 16 4 H -0.27 -12.93 6.30 99.48 0.63 -12.30 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 6 H -0.27 -13.69 7.11 99.48 0.71 -12.98 16 7 C -0.47 -26.52 8.95 23.35 0.21 -26.31 16 8 H 0.07 3.78 6.96 -2.91 -0.02 3.76 16 9 C 0.03 1.66 5.11 -21.18 -0.11 1.55 16 10 C -0.24 -11.93 6.40 22.81 0.15 -11.78 16 11 C 0.08 3.52 5.64 38.13 0.22 3.74 16 12 N -0.50 -18.77 4.70 -695.39 -3.27 -22.04 16 13 C 0.05 1.54 4.14 86.33 0.36 1.89 16 14 C -0.11 -2.50 6.09 30.64 0.19 -2.31 16 15 C -0.12 -2.35 6.00 30.67 0.18 -2.17 16 16 C -0.11 -2.94 6.10 30.65 0.19 -2.76 16 17 C 0.06 1.99 5.25 86.33 0.45 2.44 16 18 C -0.22 -8.66 8.82 22.56 0.20 -8.46 16 19 C -0.16 -6.48 9.87 22.35 0.22 -6.26 16 20 C 0.11 5.10 6.79 38.96 0.26 5.36 16 21 N -0.87 -33.50 8.97 -50.31 -0.45 -33.95 16 22 H 0.29 14.88 8.30 -92.71 -0.77 14.11 16 23 H 0.09 4.90 3.59 -2.91 -0.01 4.89 16 24 H 0.04 1.14 7.71 -2.39 -0.02 1.12 16 25 H 0.08 2.19 6.98 -2.39 -0.02 2.18 16 26 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.05 2.00 6.69 -2.39 -0.02 1.99 16 34 H 0.13 4.30 5.77 -2.91 -0.02 4.28 16 35 H 0.13 4.17 8.06 -2.91 -0.02 4.14 16 36 H 0.39 15.69 7.11 -92.71 -0.66 15.03 16 37 H 0.40 12.08 8.84 -92.71 -0.82 11.26 16 Total: -1.00 -62.72 284.35 0.79 -61.93 By element: Atomic # 1 Polarization: 35.67 SS G_CDS: -0.47 Total: 35.21 kcal Atomic # 6 Polarization: -44.66 SS G_CDS: 2.98 Total: -41.69 kcal Atomic # 7 Polarization: -100.85 SS G_CDS: -3.42 Total: -104.27 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 1.69 Total: 48.81 kcal Total: -62.72 0.79 -61.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166372438.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.290 kcal (2) G-P(sol) polarization free energy of solvation -62.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds