Wall clock time and date at job start Mon Mar 30 2020 05:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86798 * 120.00107 * 2 1 4 4 H 1.48501 * 109.47203 * 274.96397 * 3 2 1 5 5 H 1.48501 * 109.47458 * 34.96830 * 3 2 1 6 6 H 1.48503 * 109.47088 * 154.96453 * 3 2 1 7 7 C 1.39887 * 119.99448 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99698 * 195.34685 * 7 2 1 9 9 C 1.41027 * 120.00555 * 15.34904 * 7 2 1 10 10 C 1.40669 * 120.26045 * 25.55120 * 9 7 2 11 11 C 1.38008 * 119.76613 * 180.02562 * 10 9 7 12 12 N 1.39855 * 119.84100 * 179.97438 * 11 10 9 13 13 C 1.46494 * 120.00267 * 180.02562 * 12 11 10 14 14 C 1.54271 * 110.03182 * 272.16414 * 13 12 11 15 15 C 1.54883 * 104.19598 * 217.10618 * 14 13 12 16 16 C 1.54884 * 102.75063 * 37.93743 * 15 14 13 17 17 C 1.53870 * 110.03459 * 154.99732 * 13 12 11 18 18 C 1.39600 * 120.32128 * 0.25048 * 11 10 9 19 19 C 1.38058 * 120.54930 * 359.48660 * 18 11 10 20 20 C 1.38734 * 120.21898 * 0.51263 * 19 18 11 21 21 N 1.38872 * 120.16484 * 179.72143 * 20 19 18 22 22 H 0.97003 * 119.99808 * 0.02562 * 1 2 3 23 23 H 1.08001 * 120.11892 * 0.03894 * 10 9 7 24 24 H 0.96994 * 119.99502 * 0.27027 * 12 11 10 25 25 H 1.09004 * 110.01905 * 33.60564 * 13 12 11 26 26 H 1.09000 * 110.48154 * 335.78774 * 14 13 12 27 27 H 1.09003 * 110.48800 * 98.42516 * 14 13 12 28 28 H 1.09000 * 110.75586 * 279.62492 * 15 14 13 29 29 H 1.08995 * 110.75852 * 156.26073 * 15 14 13 30 30 H 1.09005 * 110.48957 * 203.37810 * 16 15 14 31 31 H 1.09000 * 110.59788 * 80.79454 * 16 15 14 32 32 H 1.08999 * 110.03141 * 238.56700 * 17 13 12 33 33 H 1.08996 * 110.03381 * 359.95089 * 17 13 12 34 34 H 1.08006 * 119.72568 * 179.72647 * 18 11 10 35 35 H 1.08001 * 119.89541 * 180.25920 * 19 18 11 36 36 H 0.96993 * 119.99670 * 180.02562 * 21 20 19 37 37 H 0.96998 * 119.99316 * 0.02591 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.3857 2.1070 -1.3948 5 1 1.4970 2.6201 0.8024 6 1 3.5892 1.4121 0.5925 7 6 2.0084 -1.2115 0.0005 8 1 3.0595 -1.2281 0.2481 9 6 1.3409 -2.4112 -0.3222 10 6 0.1932 -2.3873 -1.1352 11 6 -0.4522 -3.5674 -1.4442 12 7 -1.5938 -3.5454 -2.2518 13 6 -2.2820 -4.7959 -2.5816 14 6 -1.6631 -5.4214 -3.8488 15 6 -2.8727 -6.0272 -4.6029 16 6 -3.9867 -4.9789 -4.3603 17 6 -3.7594 -4.5145 -2.9069 18 6 0.0255 -4.7824 -0.9497 19 6 1.1538 -4.8216 -0.1551 20 6 1.8203 -3.6490 0.1696 21 7 2.9518 -3.6893 0.9737 22 1 -0.4850 0.8401 -0.0004 23 1 -0.1814 -1.4489 -1.5164 24 1 -1.9277 -2.7025 -2.5966 25 1 -2.2097 -5.4929 -1.7467 26 1 -1.1801 -4.6553 -4.4553 27 1 -0.9511 -6.2018 -3.5802 28 1 -3.1502 -6.9913 -4.1767 29 1 -2.6565 -6.1221 -5.6669 30 1 -4.9706 -5.4363 -4.4652 31 1 -3.8814 -4.1409 -5.0494 32 1 -4.4040 -5.0757 -2.2305 33 1 -3.9645 -3.4477 -2.8186 34 1 -0.4897 -5.6997 -1.1940 35 1 1.5165 -5.7679 0.2183 36 1 3.4157 -2.8679 1.1996 37 1 3.2781 -4.5388 1.3094 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166373966.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:43 Heat of formation + Delta-G solvation = 9.102652 kcal Electronic energy + Delta-G solvation = -17585.226667 eV Core-core repulsion = 14939.941519 eV Total energy + Delta-G solvation = -2645.285148 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.55587 -37.30121 -34.27533 -33.41966 -31.29762 -29.38550 -28.48995 -27.67542 -25.23861 -24.65802 -21.32488 -20.48978 -19.95401 -19.32894 -17.14604 -16.16811 -15.66687 -15.33356 -15.03066 -14.67915 -14.38715 -13.75677 -13.15471 -12.77351 -12.49758 -12.18549 -11.87339 -11.55619 -11.32830 -11.29006 -11.00564 -10.98563 -10.89662 -10.84156 -10.50640 -10.42016 -10.30050 -9.79907 -9.65279 -9.26065 -9.03582 -7.70194 -7.18644 -6.57849 -5.48610 -4.03549 2.93122 3.15175 3.17893 3.34166 3.52166 4.05433 4.49105 4.78793 4.84912 4.90582 5.10925 5.45759 5.60139 5.75039 5.76618 5.79322 5.87555 5.95272 6.00102 6.06144 6.21640 6.40755 6.42886 6.50281 6.58441 6.72330 7.16375 7.21217 7.36482 7.53307 7.76078 7.93055 8.05244 8.17365 8.50068 8.81023 8.95199 8.99116 9.04379 9.29644 9.38178 10.40589 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025569 B = 0.006155 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.831574 B = 4548.104546 C = 5387.887235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.075 3.925 3 Si 0.902 3.098 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.463 4.463 8 H 0.070 0.930 9 C 0.094 3.906 10 C -0.201 4.201 11 C 0.177 3.823 12 N -0.756 5.756 13 C 0.159 3.841 14 C -0.138 4.138 15 C -0.125 4.125 16 C -0.122 4.122 17 C -0.132 4.132 18 C -0.255 4.255 19 C -0.153 4.153 20 C 0.083 3.917 21 N -0.889 5.889 22 H 0.274 0.726 23 H 0.119 0.881 24 H 0.386 0.614 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.388 0.612 37 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.488 -6.049 -5.337 9.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.495 4.495 8 H 0.089 0.911 9 C 0.089 3.911 10 C -0.226 4.226 11 C 0.079 3.921 12 N -0.389 5.389 13 C 0.052 3.948 14 C -0.178 4.178 15 C -0.163 4.163 16 C -0.160 4.160 17 C -0.170 4.170 18 C -0.279 4.279 19 C -0.177 4.177 20 C -0.018 4.018 21 N -0.432 5.432 22 H 0.085 0.915 23 H 0.137 0.863 24 H 0.220 0.780 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.216 0.784 37 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -4.793 -6.037 -5.347 9.381 hybrid contribution 0.490 1.059 0.160 1.178 sum -4.303 -4.978 -5.187 8.378 Atomic orbital electron populations 1.69887 1.07218 1.28221 1.37501 1.25745 0.94675 1.00647 0.92928 0.86406 0.80462 0.81526 0.78812 1.19733 1.20622 1.18934 1.19149 0.96612 0.91055 1.42652 0.91145 1.16978 0.92684 0.90260 0.91207 1.20535 1.01032 0.95169 1.05838 1.17542 0.87545 0.94084 0.92923 1.44529 1.30367 1.06091 1.57954 1.21233 0.89869 0.87838 0.95887 1.22939 0.97161 1.00198 0.97492 1.22472 0.95779 0.98193 0.99836 1.22327 0.98322 0.98678 0.96692 1.22437 0.96616 1.01666 0.96326 1.19637 1.02211 0.94575 1.11467 1.19705 0.98680 0.94560 1.04780 1.17859 0.91716 0.93915 0.98261 1.41805 1.32138 1.09088 1.60173 0.91540 0.86350 0.78036 0.90864 0.91271 0.91845 0.91807 0.92069 0.92154 0.91853 0.91621 0.91331 0.89657 0.89876 0.78375 0.80155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.18 10.88 55.55 0.60 -20.57 16 2 C 0.08 1.93 5.18 -17.33 -0.09 1.84 16 3 Si 0.90 19.16 29.59 -169.99 -5.03 14.13 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.46 -12.32 8.50 -37.91 -0.32 -12.64 16 8 H 0.07 1.79 6.67 -52.49 -0.35 1.44 16 9 C 0.09 2.53 5.58 -106.66 -0.60 1.93 16 10 C -0.20 -5.30 8.50 -38.75 -0.33 -5.63 16 11 C 0.18 4.19 6.64 -83.77 -0.56 3.63 16 12 N -0.76 -14.73 5.21 -51.09 -0.27 -15.00 16 13 C 0.16 2.55 2.94 -66.82 -0.20 2.35 16 14 C -0.14 -2.02 6.53 -25.07 -0.16 -2.19 16 15 C -0.12 -1.45 6.91 -24.74 -0.17 -1.62 16 16 C -0.12 -1.38 6.83 -25.08 -0.17 -1.55 16 17 C -0.13 -1.74 6.57 -25.62 -0.17 -1.91 16 18 C -0.26 -5.88 9.21 -39.14 -0.36 -6.24 16 19 C -0.15 -3.57 9.86 -39.46 -0.39 -3.96 16 20 C 0.08 2.05 6.79 -83.22 -0.56 1.49 16 21 N -0.89 -18.54 8.98 32.75 0.29 -18.24 16 22 H 0.27 6.66 8.30 -40.82 -0.34 6.33 16 23 H 0.12 3.24 6.14 -52.49 -0.32 2.92 16 24 H 0.39 7.27 8.33 -40.82 -0.34 6.93 16 25 H 0.07 1.26 6.41 -51.93 -0.33 0.92 16 26 H 0.07 1.09 8.05 -51.93 -0.42 0.68 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.93 7.62 -51.93 -0.40 0.53 16 34 H 0.09 1.79 6.19 -52.48 -0.32 1.47 16 35 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.39 7.94 7.04 -40.82 -0.29 7.66 16 37 H 0.37 6.60 8.83 -40.82 -0.36 6.24 16 LS Contribution 296.52 15.07 4.47 4.47 Total: -1.00 -28.17 296.52 -9.23 -37.41 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: -5.23 Total: 22.30 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: -4.08 Total: -24.49 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: 0.63 Total: -53.81 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.17 -9.23 -37.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166373966.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.508 kcal (2) G-P(sol) polarization free energy of solvation -28.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds