Wall clock time and date at job start Mon Mar 30 2020 05:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86796 * 120.00468 * 2 1 4 4 H 1.48500 * 109.47168 * 274.96799 * 3 2 1 5 5 H 1.48502 * 109.46980 * 34.96663 * 3 2 1 6 6 H 1.48497 * 109.47276 * 154.96566 * 3 2 1 7 7 C 1.39894 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99917 * 195.34657 * 7 2 1 9 9 C 1.41020 * 119.99864 * 15.34905 * 7 2 1 10 10 C 1.40671 * 120.26930 * 25.55349 * 9 7 2 11 11 C 1.38006 * 119.77120 * 180.02562 * 10 9 7 12 12 N 1.39849 * 119.83974 * 179.97438 * 11 10 9 13 13 C 1.46499 * 119.99991 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47342 * 180.02562 * 13 12 11 15 15 C 1.53773 * 113.61507 * 85.86194 * 14 13 12 16 16 C 1.54056 * 86.98582 * 140.02179 * 15 14 13 17 17 C 1.53775 * 113.61779 * 183.47355 * 14 13 12 18 18 C 1.39605 * 120.31799 * 0.27127 * 11 10 9 19 19 C 1.38054 * 120.55315 * 359.44328 * 18 11 10 20 20 C 1.38747 * 120.21562 * 0.55761 * 19 18 11 21 21 N 1.38863 * 120.16049 * 179.74476 * 20 19 18 22 22 H 0.97007 * 119.99867 * 359.97438 * 1 2 3 23 23 H 1.07994 * 120.11554 * 0.03698 * 10 9 7 24 24 H 0.96998 * 120.00186 * 0.02562 * 12 11 10 25 25 H 1.08995 * 109.47034 * 60.00203 * 13 12 11 26 26 H 1.09001 * 109.47407 * 300.00560 * 13 12 11 27 27 H 1.09005 * 112.84334 * 314.67124 * 14 13 12 28 28 H 1.08999 * 113.61846 * 254.61496 * 15 14 13 29 29 H 1.09005 * 113.61695 * 25.51829 * 15 14 13 30 30 H 1.08994 * 113.62000 * 220.02076 * 16 15 14 31 31 H 1.09005 * 113.60794 * 89.11496 * 16 15 14 32 32 H 1.09001 * 113.61158 * 334.48337 * 17 14 13 33 33 H 1.09003 * 113.61719 * 105.29767 * 17 14 13 34 34 H 1.08001 * 119.71973 * 179.73245 * 18 11 10 35 35 H 1.07994 * 119.89527 * 180.28220 * 19 18 11 36 36 H 0.96997 * 120.00088 * 179.97438 * 21 20 19 37 37 H 0.97002 * 119.99942 * 359.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6176 0.0000 4 1 2.3856 2.1069 -1.3948 5 1 1.4970 2.6200 0.8024 6 1 3.5891 1.4120 0.5924 7 6 2.0084 -1.2115 0.0005 8 1 3.0595 -1.2281 0.2481 9 6 1.3409 -2.4111 -0.3222 10 6 0.1932 -2.3874 -1.1352 11 6 -0.4523 -3.5674 -1.4442 12 7 -1.5937 -3.5454 -2.2518 13 6 -2.2813 -4.7960 -2.5825 14 6 -3.4890 -4.4943 -3.4721 15 6 -3.1468 -4.4149 -4.9692 16 6 -4.4698 -5.1606 -5.2279 17 6 -4.3319 -5.7357 -3.8085 18 6 0.0252 -4.7823 -0.9492 19 6 1.1537 -4.8217 -0.1551 20 6 1.8203 -3.6489 0.1697 21 7 2.9523 -3.6893 0.9730 22 1 -0.4850 0.8401 0.0004 23 1 -0.1815 -1.4490 -1.5164 24 1 -1.9298 -2.7021 -2.5937 25 1 -2.6172 -5.2795 -1.6651 26 1 -1.5965 -5.4581 -3.1123 27 1 -4.0784 -3.6503 -3.1136 28 1 -3.1334 -3.3978 -5.3608 29 1 -2.2615 -4.9877 -5.2457 30 1 -4.4004 -5.9136 -6.0128 31 1 -5.3273 -4.4988 -5.3495 32 1 -3.7701 -6.6689 -3.7681 33 1 -5.2740 -5.7850 -3.2624 34 1 -0.4900 -5.6996 -1.1936 35 1 1.5164 -5.7679 0.2183 36 1 3.4166 -2.8681 1.1983 37 1 3.2786 -4.5388 1.3088 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166378203.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:44 Heat of formation + Delta-G solvation = 17.038115 kcal Electronic energy + Delta-G solvation = -17276.636027 eV Core-core repulsion = 14631.694986 eV Total energy + Delta-G solvation = -2644.941040 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.11345 -39.38181 -36.57020 -35.32613 -33.35927 -31.29498 -29.69498 -27.21707 -26.59121 -26.24958 -23.81821 -22.64699 -21.43362 -20.27050 -18.88701 -17.88668 -17.24303 -16.69897 -16.63252 -16.34750 -15.74171 -15.09105 -14.98552 -14.42086 -14.18487 -13.75855 -13.62151 -13.30061 -13.17771 -12.96648 -12.79995 -12.68561 -12.52888 -12.07332 -11.84769 -11.46020 -11.41779 -11.20697 -11.08116 -10.97567 -10.94266 -9.39236 -9.13567 -8.48887 -7.28994 -6.00517 1.12347 1.41334 1.51569 1.53309 1.66321 2.27511 2.90956 2.97952 3.74775 3.77527 3.81138 3.88942 3.97460 4.03560 4.45201 4.57551 4.63541 4.81872 4.84821 4.89940 4.90667 5.03323 5.11356 5.14378 5.24054 5.34380 5.39127 5.45171 5.62580 5.68088 5.89897 6.07254 6.18072 6.29456 6.57622 6.97784 7.07167 7.14405 7.28651 7.48309 7.67482 8.51608 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024348 B = 0.005594 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.705610 B = 5004.364728 C = 5957.211269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.032 3.968 3 Si 0.976 3.024 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.492 4.492 8 H 0.075 0.925 9 C 0.060 3.940 10 C -0.228 4.228 11 C 0.172 3.828 12 N -0.759 5.759 13 C 0.150 3.850 14 C -0.124 4.124 15 C -0.138 4.138 16 C -0.132 4.132 17 C -0.126 4.126 18 C -0.260 4.260 19 C -0.158 4.158 20 C 0.068 3.932 21 N -0.879 5.879 22 H 0.279 0.721 23 H 0.099 0.901 24 H 0.388 0.612 25 H 0.039 0.961 26 H 0.045 0.955 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.390 0.610 37 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.637 -6.464 -6.437 10.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.180 4.180 3 Si 0.798 3.202 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.523 4.523 8 H 0.093 0.907 9 C 0.055 3.945 10 C -0.252 4.252 11 C 0.071 3.929 12 N -0.392 5.392 13 C 0.026 3.974 14 C -0.142 4.142 15 C -0.176 4.176 16 C -0.169 4.169 17 C -0.164 4.164 18 C -0.284 4.284 19 C -0.182 4.182 20 C -0.034 4.034 21 N -0.423 5.423 22 H 0.089 0.911 23 H 0.117 0.883 24 H 0.221 0.779 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.123 0.877 35 H 0.129 0.871 36 H 0.218 0.782 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -5.949 -6.512 -6.474 10.941 hybrid contribution 0.507 1.182 0.319 1.326 sum -5.442 -5.330 -6.155 9.793 Atomic orbital electron populations 1.69972 1.08743 1.29349 1.38178 1.26586 0.95426 1.03943 0.92064 0.85283 0.79224 0.76838 0.78821 1.19439 1.19944 1.18103 1.19421 0.96975 0.91955 1.43963 0.90737 1.17376 0.93484 0.91595 0.92064 1.20511 1.02146 0.95332 1.07250 1.17674 0.88372 0.93669 0.93189 1.44430 1.29431 1.08010 1.57365 1.21137 0.92601 0.86572 0.97123 1.22774 0.96105 1.00191 0.95174 1.23020 0.98528 1.00914 0.95120 1.22825 0.97201 0.99869 0.96997 1.22866 0.99800 0.96720 0.97013 1.19919 1.02473 0.95008 1.11047 1.20051 0.98454 0.95367 1.04349 1.18035 0.92830 0.93665 0.98828 1.41672 1.30986 1.10154 1.59475 0.91086 0.88315 0.77898 0.94261 0.93697 0.89348 0.91945 0.90539 0.90360 0.89489 0.89561 0.90578 0.87696 0.87094 0.78212 0.78195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.46 10.88 21.82 0.24 -45.22 16 2 C 0.03 1.67 5.18 85.23 0.44 2.12 16 3 Si 0.98 39.68 29.59 68.60 2.03 41.71 16 4 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 5 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 6 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 7 C -0.49 -26.77 8.50 23.35 0.20 -26.58 16 8 H 0.07 3.83 6.67 -2.91 -0.02 3.82 16 9 C 0.06 3.32 5.58 -21.18 -0.12 3.20 16 10 C -0.23 -12.48 8.50 22.81 0.19 -12.28 16 11 C 0.17 8.32 6.64 38.14 0.25 8.57 16 12 N -0.76 -30.22 5.74 -339.43 -1.95 -32.16 16 13 C 0.15 4.74 4.73 86.38 0.41 5.14 16 14 C -0.12 -3.01 3.75 -10.27 -0.04 -3.05 16 15 C -0.14 -3.05 7.65 31.21 0.24 -2.81 16 16 C -0.13 -2.26 8.09 31.21 0.25 -2.01 16 17 C -0.13 -2.39 7.64 31.12 0.24 -2.15 16 18 C -0.26 -12.02 9.31 22.56 0.21 -11.81 16 19 C -0.16 -7.28 9.86 22.35 0.22 -7.05 16 20 C 0.07 3.39 6.79 38.97 0.26 3.65 16 21 N -0.88 -36.15 8.98 -50.31 -0.45 -36.60 16 22 H 0.28 13.92 8.30 -92.70 -0.77 13.15 16 23 H 0.10 5.70 6.14 -2.91 -0.02 5.68 16 24 H 0.39 15.06 8.48 -92.71 -0.79 14.27 16 25 H 0.04 1.28 7.93 -2.39 -0.02 1.27 16 26 H 0.04 1.43 7.68 -2.39 -0.02 1.41 16 27 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 1.77 7.92 -2.38 -0.02 1.75 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.09 1.57 8.10 -2.39 -0.02 1.55 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.11 4.31 6.69 -2.91 -0.02 4.29 16 35 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 36 H 0.39 15.85 7.04 -92.71 -0.65 15.20 16 37 H 0.39 13.23 8.83 -92.71 -0.82 12.42 16 Total: -1.00 -61.72 301.28 1.47 -60.25 By element: Atomic # 1 Polarization: 58.24 SS G_CDS: -1.16 Total: 57.09 kcal Atomic # 6 Polarization: -47.82 SS G_CDS: 2.76 Total: -45.05 kcal Atomic # 7 Polarization: -111.83 SS G_CDS: -2.16 Total: -113.99 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Total: -61.72 1.47 -60.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166378203.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.287 kcal (2) G-P(sol) polarization free energy of solvation -61.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds