Wall clock time and date at job start Mon Mar 30 2020 05:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35644 * 116.99695 * 2 1 4 4 C 1.38472 * 120.25514 * 359.71800 * 3 2 1 5 5 C 1.38531 * 119.79781 * 179.71240 * 4 3 2 6 6 C 1.37729 * 120.82007 * 0.53073 * 5 4 3 7 7 C 1.36706 * 120.78286 * 359.77395 * 6 5 4 8 8 C 1.40756 * 119.67021 * 359.96096 * 7 6 5 9 9 C 1.41150 * 120.27993 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99847 * 154.75744 * 9 8 7 11 11 C 1.39933 * 120.00214 * 334.74996 * 9 8 7 12 12 N 1.30868 * 119.99859 * 342.84763 * 11 9 8 13 13 Si 1.86801 * 120.00183 * 162.84589 * 11 9 8 14 14 H 1.48498 * 109.46910 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47367 * 120.00546 * 13 11 9 16 16 H 1.48507 * 109.46817 * 240.00390 * 13 11 9 17 17 C 1.51542 * 120.06612 * 179.80081 * 6 5 4 18 18 C 1.53077 * 108.47254 * 289.28469 * 17 6 5 19 19 C 1.51595 * 110.94842 * 85.69231 * 18 17 6 20 20 C 1.51588 * 114.42000 * 291.80566 * 19 18 17 21 21 C 1.51560 * 119.16264 * 180.27032 * 5 4 3 22 22 H 1.09000 * 109.46837 * 60.00759 * 1 2 3 23 23 H 1.09005 * 109.46832 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47318 * 300.00114 * 1 2 3 25 25 H 1.07997 * 120.09945 * 359.97438 * 4 3 2 26 26 H 1.07995 * 120.16490 * 179.97438 * 7 6 5 27 27 H 0.97003 * 120.00003 * 179.97438 * 12 11 9 28 28 H 1.09000 * 109.63253 * 49.00164 * 17 6 5 29 29 H 1.09001 * 109.63660 * 169.59556 * 17 6 5 30 30 H 1.08998 * 109.19286 * 325.31361 * 18 17 6 31 31 H 1.08995 * 109.13868 * 206.03438 * 18 17 6 32 32 H 1.09003 * 108.49245 * 170.53183 * 19 18 17 33 33 H 1.08997 * 108.49278 * 53.08567 * 19 18 17 34 34 H 1.09004 * 109.17437 * 307.84118 * 20 19 18 35 35 H 1.08990 * 109.13511 * 188.58469 * 20 19 18 36 36 H 1.09001 * 109.63324 * 10.58087 * 21 5 4 37 37 H 1.08994 * 109.63357 * 131.18322 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2086 0.0000 4 6 1.2957 2.3732 -0.0059 5 6 1.9343 3.6026 0.0002 6 6 3.3092 3.6835 0.0011 7 6 4.0767 2.5521 0.0007 8 6 3.4557 1.2890 0.0001 9 6 4.2356 0.1125 -0.0009 10 1 3.8289 -0.8053 0.3975 11 6 5.5355 0.1352 -0.5183 12 7 5.9144 1.1197 -1.2928 13 14 6.7301 -1.2397 -0.1034 14 1 6.0619 -2.2248 0.7844 15 1 7.1633 -1.9132 -1.3538 16 1 7.9151 -0.6733 0.5899 17 6 3.9901 5.0373 0.0033 18 6 3.7805 5.6878 -1.3665 19 6 2.4602 6.4312 -1.4171 20 6 1.2361 5.5384 -1.3690 21 6 1.1004 4.8681 -0.0001 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 0.2169 2.3233 -0.0109 26 1 5.1540 2.6272 0.0010 27 1 6.8157 1.1356 -1.6512 28 1 3.5525 5.6661 0.7786 29 1 5.0567 4.9106 0.1891 30 1 3.7858 4.9148 -2.1349 31 1 4.5933 6.3883 -1.5576 32 1 2.4269 7.0143 -2.3374 33 1 2.4190 7.1203 -0.5736 34 1 1.3232 4.7698 -2.1370 35 1 0.3478 6.1393 -1.5631 36 1 0.0554 4.6181 0.1831 37 1 1.4599 5.5438 0.7759 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215790828.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:35 Heat of formation + Delta-G solvation = -59.774213 kcal Electronic energy + Delta-G solvation = -18174.538464 eV Core-core repulsion = 15493.973840 eV Total energy + Delta-G solvation = -2680.564624 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.79624 -39.06674 -36.85357 -35.10332 -33.47163 -31.85194 -29.88314 -28.21001 -27.81552 -25.20716 -24.11842 -22.62715 -21.05199 -20.83041 -19.11453 -17.79723 -17.32466 -16.40188 -16.22417 -15.97957 -15.47498 -15.26489 -14.62652 -14.44286 -14.30383 -13.85254 -13.67118 -13.53118 -13.03389 -12.80981 -12.73332 -12.61985 -12.49142 -12.23293 -11.96015 -11.65203 -11.53947 -11.32037 -11.27679 -11.08992 -10.94729 -10.77676 -9.20477 -8.72916 -8.45989 -6.16377 0.97176 1.14407 1.36311 1.48782 1.51855 2.23792 2.74745 2.94791 3.68569 3.93267 4.12793 4.13937 4.33804 4.41788 4.45825 4.47586 4.52203 4.66437 4.70655 4.73286 4.86406 4.88772 5.03119 5.07587 5.20036 5.26953 5.31576 5.37110 5.39626 5.47891 5.50038 5.60850 5.68443 5.92309 5.98352 6.32671 6.39139 6.62874 6.85503 6.97616 7.29202 8.40710 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.020682 B = 0.008722 C = 0.006440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.485423 B = 3209.506129 C = 4346.858313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.343 6.343 3 C -0.006 4.006 4 C -0.180 4.180 5 C -0.163 4.163 6 C -0.095 4.095 7 C -0.161 4.161 8 C 0.053 3.947 9 C -0.489 4.489 10 H 0.063 0.937 11 C 0.033 3.967 12 N -0.830 5.830 13 Si 0.977 3.023 14 H -0.264 1.264 15 H -0.266 1.266 16 H -0.261 1.261 17 C -0.065 4.065 18 C -0.107 4.107 19 C -0.109 4.109 20 C -0.110 4.110 21 C -0.055 4.055 22 H 0.048 0.952 23 H 0.110 0.890 24 H 0.052 0.948 25 H 0.123 0.877 26 H 0.104 0.896 27 H 0.285 0.715 28 H 0.079 0.921 29 H 0.050 0.950 30 H 0.031 0.969 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.035 0.965 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.075 7.383 0.788 9.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.259 6.259 3 C -0.050 4.050 4 C -0.199 4.199 5 C -0.164 4.164 6 C -0.095 4.095 7 C -0.181 4.181 8 C 0.050 3.950 9 C -0.519 4.519 10 H 0.081 0.919 11 C -0.180 4.180 12 N -0.458 5.458 13 Si 0.799 3.201 14 H -0.188 1.188 15 H -0.191 1.191 16 H -0.186 1.186 17 C -0.102 4.102 18 C -0.144 4.144 19 C -0.146 4.146 20 C -0.147 4.147 21 C -0.092 4.092 22 H 0.066 0.934 23 H 0.128 0.872 24 H 0.071 0.929 25 H 0.141 0.859 26 H 0.122 0.878 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.054 0.946 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.804 7.285 0.633 9.336 hybrid contribution 0.505 -1.011 -0.052 1.131 sum -5.300 6.274 0.580 8.233 Atomic orbital electron populations 1.23051 0.78779 1.04040 1.00828 1.85898 1.21405 1.28186 1.90368 1.19493 0.92338 0.83983 1.09215 1.20931 0.98415 0.91859 1.08710 1.19260 0.92902 0.94316 1.09929 1.19343 0.93370 0.94940 1.01833 1.20801 0.98790 0.91054 1.07475 1.17469 0.88869 0.94686 0.93945 1.19503 0.98687 0.96505 1.37226 0.91880 1.26637 0.99821 0.99410 0.92122 1.69903 1.19816 1.32489 1.23583 0.85236 0.77653 0.78150 0.79097 1.18790 1.19081 1.18583 1.20667 0.98600 0.92867 0.98090 1.21192 0.98510 0.98725 0.96015 1.20989 0.93128 0.97829 1.02680 1.21249 0.98548 0.98355 0.96552 1.20542 0.97858 0.93207 0.97565 0.93351 0.87183 0.92944 0.85902 0.87824 0.90486 0.90285 0.93126 0.94967 0.90781 0.91314 0.90902 0.94597 0.90008 0.91452 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 9.81 113.37 1.11 2.07 16 2 O -0.34 -16.77 9.79 -89.58 -0.88 -17.65 16 3 C -0.01 -0.31 6.72 23.08 0.16 -0.16 16 4 C -0.18 -8.10 8.65 22.40 0.19 -7.90 16 5 C -0.16 -6.90 5.01 -19.64 -0.10 -6.99 16 6 C -0.09 -4.34 4.96 -20.08 -0.10 -4.44 16 7 C -0.16 -8.78 8.24 22.53 0.19 -8.59 16 8 C 0.05 3.04 5.58 -21.19 -0.12 2.92 16 9 C -0.49 -28.73 8.72 23.40 0.20 -28.53 16 10 H 0.06 3.75 7.66 -2.91 -0.02 3.73 16 11 C 0.03 1.78 5.15 85.25 0.44 2.22 16 12 N -0.83 -45.72 10.97 21.83 0.24 -45.48 16 13 Si 0.98 41.20 29.59 68.60 2.03 43.23 16 14 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 15 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 16 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 17 C -0.07 -2.39 5.45 30.14 0.16 -2.22 16 18 C -0.11 -3.44 5.65 30.16 0.17 -3.27 16 19 C -0.11 -2.83 5.22 29.67 0.15 -2.67 16 20 C -0.11 -3.09 5.64 30.14 0.17 -2.92 16 21 C -0.05 -1.72 5.45 30.13 0.16 -1.55 16 22 H 0.05 1.54 7.66 -2.39 -0.02 1.52 16 23 H 0.11 3.02 8.14 -2.38 -0.02 3.00 16 24 H 0.05 1.62 7.68 -2.39 -0.02 1.60 16 25 H 0.12 4.69 6.22 -2.91 -0.02 4.67 16 26 H 0.10 5.92 6.07 -2.91 -0.02 5.90 16 27 H 0.28 14.13 8.30 -92.71 -0.77 13.37 16 28 H 0.08 2.52 6.90 -2.39 -0.02 2.51 16 29 H 0.05 1.91 7.87 -2.39 -0.02 1.89 16 30 H 0.03 1.23 7.85 -2.39 -0.02 1.22 16 31 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.07 1.63 7.83 -2.39 -0.02 1.61 16 34 H 0.04 1.20 7.85 -2.38 -0.02 1.18 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.07 1.90 7.89 -2.39 -0.02 1.88 16 37 H 0.07 2.06 6.90 -2.39 -0.02 2.04 16 Total: -1.00 -65.80 291.16 5.24 -60.56 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 1.05 Total: 21.39 kcal Atomic # 6 Polarization: -64.84 SS G_CDS: 2.80 Total: -62.05 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 0.24 Total: -45.48 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.88 Total: -17.65 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -65.80 5.24 -60.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215790828.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.782 kcal (2) G-P(sol) polarization free energy of solvation -65.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds