Wall clock time and date at job start Mon Mar 30 2020 05:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35644 * 116.99766 * 2 1 4 4 C 1.38446 * 120.26527 * 359.72390 * 3 2 1 5 5 C 1.38306 * 120.05075 * 180.25501 * 4 3 2 6 6 C 1.38823 * 120.59262 * 0.03979 * 5 4 3 7 7 C 1.50698 * 119.73259 * 179.97438 * 6 5 4 8 8 C 1.54270 * 110.03167 * 57.88891 * 7 6 5 9 9 C 1.54956 * 104.16080 * 217.13761 * 8 7 6 10 10 C 1.54893 * 102.77757 * 37.88495 * 9 8 7 11 11 C 1.53869 * 110.03383 * 300.66862 * 7 6 5 12 12 C 1.36499 * 120.53793 * 359.95857 * 6 5 4 13 13 C 1.40718 * 119.92492 * 0.02562 * 12 6 5 14 14 C 1.41161 * 120.28757 * 179.97438 * 13 12 6 15 15 H 1.07994 * 119.99967 * 154.61587 * 14 13 12 16 16 C 1.39942 * 119.99755 * 334.61576 * 14 13 12 17 17 N 1.30858 * 119.99754 * 343.01177 * 16 14 13 18 18 Si 1.86796 * 119.99983 * 163.01414 * 16 14 13 19 19 H 1.48502 * 109.46998 * 59.99637 * 18 16 14 20 20 H 1.48498 * 109.47396 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46961 * 300.00194 * 18 16 14 22 22 H 1.09003 * 109.46910 * 180.02562 * 1 2 3 23 23 H 1.08993 * 109.47294 * 299.99815 * 1 2 3 24 24 H 1.09005 * 109.47247 * 60.00160 * 1 2 3 25 25 H 1.08000 * 119.97506 * 0.27292 * 4 3 2 26 26 H 1.07999 * 119.70690 * 179.97438 * 5 4 3 27 27 H 1.08998 * 110.01502 * 179.27695 * 7 6 5 28 28 H 1.09006 * 110.48286 * 335.78650 * 8 7 6 29 29 H 1.08995 * 110.48824 * 98.42270 * 8 7 6 30 30 H 1.09008 * 110.72015 * 279.57365 * 9 8 7 31 31 H 1.08994 * 110.92715 * 156.29351 * 9 8 7 32 32 H 1.09003 * 110.48624 * 203.40541 * 10 9 8 33 33 H 1.08995 * 110.59888 * 80.82453 * 10 9 8 34 34 H 1.08994 * 110.03497 * 238.56731 * 11 7 6 35 35 H 1.09001 * 110.03377 * 359.95126 * 11 7 6 36 36 H 1.08000 * 120.03554 * 180.02562 * 12 6 5 37 37 H 0.97001 * 120.00044 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0447 1.2086 0.0000 4 6 1.2960 2.3732 -0.0058 5 6 1.9285 3.6031 -0.0111 6 6 3.3143 3.6850 -0.0115 7 6 3.9832 5.0353 -0.0179 8 6 3.5275 5.8566 1.2059 9 6 3.4219 7.3071 0.6710 10 6 2.8551 7.1055 -0.7563 11 6 3.5565 5.8291 -1.2650 12 6 4.0760 2.5523 -0.0059 13 6 3.4556 1.2892 -0.0001 14 6 4.2359 0.1128 0.0052 15 1 3.8302 -0.8023 0.4104 16 6 5.5351 0.1326 -0.5145 17 7 5.9133 1.1138 -1.2933 18 14 6.7293 -1.2416 -0.0965 19 1 6.1755 -2.5378 -0.5639 20 1 8.0300 -0.9879 -0.7665 21 1 6.9317 -1.2912 1.3738 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 0.2173 2.3211 -0.0058 26 1 1.3390 4.5080 -0.0160 27 1 5.0665 4.9151 -0.0045 28 1 2.5566 5.5086 1.5587 29 1 4.2682 5.7961 2.0032 30 1 4.4049 7.7768 0.6335 31 1 2.7364 7.8973 1.2790 32 1 3.1053 7.9565 -1.3898 33 1 1.7754 6.9602 -0.7232 34 1 4.4326 6.0949 -1.8564 35 1 2.8661 5.2373 -1.8662 36 1 5.1535 2.6254 -0.0058 37 1 6.8137 1.1274 -1.6539 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215790957.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:19 Heat of formation + Delta-G solvation = -42.137879 kcal Electronic energy + Delta-G solvation = -17856.094198 eV Core-core repulsion = 15176.294343 eV Total energy + Delta-G solvation = -2679.799855 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.92027 -37.75585 -35.61213 -33.51249 -30.29843 -29.58641 -28.21138 -26.94944 -26.03786 -24.83011 -21.25596 -20.60291 -20.19691 -18.80428 -17.14614 -16.30551 -15.71630 -14.98538 -14.79760 -14.58399 -14.35781 -13.52989 -12.93874 -12.91847 -12.68518 -12.50024 -11.76768 -11.52242 -11.34869 -11.10675 -10.97082 -10.75789 -10.71080 -10.63961 -10.61725 -10.45671 -10.28490 -10.01551 -9.60218 -9.46809 -9.27697 -9.07268 -7.40353 -6.85821 -6.59476 -4.17579 2.81349 3.02743 3.12123 3.15951 3.25807 4.01573 4.57226 4.65733 5.09439 5.12458 5.20252 5.64888 5.80202 5.84859 5.86617 5.88170 5.98964 6.00171 6.07902 6.08798 6.17303 6.24075 6.29849 6.40403 6.47121 6.61237 6.69771 6.79084 6.88535 7.05713 7.18803 7.40161 7.47162 7.80872 7.81879 8.16231 8.30406 8.48539 8.77400 8.92753 9.15464 10.28637 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018789 B = 0.008013 C = 0.005986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.861382 B = 3493.429745 C = 4676.835821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.313 6.313 3 C 0.005 3.995 4 C -0.177 4.177 5 C -0.203 4.203 6 C -0.084 4.084 7 C -0.042 4.042 8 C -0.115 4.115 9 C -0.125 4.125 10 C -0.122 4.122 11 C -0.114 4.114 12 C -0.139 4.139 13 C 0.098 3.902 14 C -0.448 4.448 15 H 0.080 0.920 16 C 0.074 3.926 17 N -0.798 5.798 18 Si 0.908 3.092 19 H -0.266 1.266 20 H -0.280 1.280 21 H -0.265 1.265 22 H 0.080 0.920 23 H 0.038 0.962 24 H 0.039 0.961 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.123 0.877 37 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.526 6.322 1.696 7.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.228 6.228 3 C -0.039 4.039 4 C -0.196 4.196 5 C -0.222 4.222 6 C -0.084 4.084 7 C -0.060 4.060 8 C -0.153 4.153 9 C -0.163 4.163 10 C -0.160 4.160 11 C -0.152 4.152 12 C -0.159 4.159 13 C 0.096 3.904 14 C -0.478 4.478 15 H 0.098 0.902 16 C -0.143 4.143 17 N -0.424 5.424 18 Si 0.732 3.268 19 H -0.191 1.191 20 H -0.205 1.205 21 H -0.189 1.189 22 H 0.098 0.902 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.111 0.889 26 H 0.107 0.893 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.141 0.859 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.224 6.203 1.540 7.158 hybrid contribution 0.238 -0.463 0.015 0.520 sum -2.986 5.740 1.555 6.655 Atomic orbital electron populations 1.22703 0.81958 1.01562 0.99808 1.85953 1.18029 1.28419 1.90391 1.19247 0.92412 0.82543 1.09715 1.20599 0.97148 0.92987 1.08874 1.19887 0.93499 0.94923 1.13938 1.19078 0.93118 0.93382 1.02811 1.20594 0.99037 0.92852 0.93554 1.22499 1.01561 0.93788 0.97442 1.22512 1.00204 0.97227 0.96318 1.22354 0.99911 0.97570 0.96166 1.22209 0.99822 0.95434 0.97704 1.20773 0.99434 0.90103 1.05557 1.17037 0.87291 0.94010 0.92086 1.19373 0.96905 0.96842 1.34652 0.90183 1.25868 0.98780 0.96812 0.92821 1.69831 1.19308 1.30795 1.22515 0.86377 0.78970 0.81602 0.79814 1.19072 1.20475 1.18937 0.90172 0.94372 0.94275 0.88880 0.89345 0.91451 0.91194 0.92368 0.92078 0.92362 0.92574 0.92048 0.92624 0.91354 0.85919 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 9.81 101.05 0.99 1.63 16 2 O -0.31 -7.49 9.80 -18.63 -0.18 -7.68 16 3 C 0.00 0.13 6.72 -38.33 -0.26 -0.13 16 4 C -0.18 -4.06 9.04 -39.48 -0.36 -4.42 16 5 C -0.20 -4.49 8.08 -39.34 -0.32 -4.81 16 6 C -0.08 -1.90 4.65 -105.03 -0.49 -2.39 16 7 C -0.04 -0.79 3.12 -90.66 -0.28 -1.07 16 8 C -0.12 -1.87 6.27 -25.03 -0.16 -2.03 16 9 C -0.13 -1.69 6.91 -24.70 -0.17 -1.86 16 10 C -0.12 -1.71 6.83 -25.07 -0.17 -1.88 16 11 C -0.11 -1.92 6.23 -25.62 -0.16 -2.08 16 12 C -0.14 -3.60 8.25 -39.27 -0.32 -3.93 16 13 C 0.10 2.70 5.58 -106.68 -0.59 2.10 16 14 C -0.45 -12.36 8.71 -37.83 -0.33 -12.69 16 15 H 0.08 2.20 7.66 -52.49 -0.40 1.80 16 16 C 0.07 1.90 5.15 -17.33 -0.09 1.81 16 17 N -0.80 -20.93 10.97 55.55 0.61 -20.32 16 18 Si 0.91 19.31 29.59 -169.99 -5.03 14.28 16 19 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.26 -5.58 7.11 56.52 0.40 -5.17 16 22 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 23 H 0.04 0.62 7.67 -51.93 -0.40 0.22 16 24 H 0.04 0.65 7.66 -51.93 -0.40 0.25 16 25 H 0.09 1.88 6.31 -52.49 -0.33 1.55 16 26 H 0.09 1.77 7.75 -52.49 -0.41 1.36 16 27 H 0.07 1.30 7.87 -51.93 -0.41 0.90 16 28 H 0.07 1.19 6.89 -51.93 -0.36 0.83 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.26 7.28 -51.93 -0.38 0.88 16 36 H 0.12 3.28 6.06 -52.49 -0.32 2.96 16 37 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 LS Contribution 297.47 15.07 4.48 4.48 Total: -1.00 -28.31 297.47 -8.32 -36.63 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -5.49 Total: 4.35 kcal Atomic # 6 Polarization: -29.04 SS G_CDS: -2.71 Total: -31.74 kcal Atomic # 7 Polarization: -20.93 SS G_CDS: 0.61 Total: -20.32 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -0.18 Total: -7.68 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.31 -8.32 -36.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215790957.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.507 kcal (2) G-P(sol) polarization free energy of solvation -28.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds