Wall clock time and date at job start Mon Mar 30 2020 06:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99933 * 2 1 4 4 H 1.48497 * 109.47316 * 240.00142 * 3 2 1 5 5 H 1.48504 * 109.47165 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46957 * 119.99861 * 3 2 1 7 7 C 1.37875 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00341 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99661 * 359.97438 * 7 2 1 10 10 C 1.50700 * 109.46614 * 180.02562 * 9 7 2 11 11 N 1.31812 * 119.12601 * 90.00552 * 10 9 7 12 12 C 1.32315 * 120.82127 * 179.97438 * 11 10 9 13 13 C 1.38622 * 119.10267 * 359.97438 * 12 11 10 14 14 C 1.38577 * 118.39826 * 359.97438 * 13 12 11 15 15 C 1.50703 * 120.44592 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.46912 * 325.00284 * 15 14 13 17 17 C 1.53001 * 109.46886 * 180.02562 * 16 15 14 18 18 C 1.53002 * 109.46963 * 299.99499 * 17 16 15 19 19 C 1.52997 * 109.47092 * 60.00194 * 18 17 16 20 20 C 1.53002 * 109.46966 * 85.00196 * 15 14 13 21 21 N 1.31782 * 119.12343 * 270.25005 * 10 9 7 22 22 H 0.96998 * 119.99879 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47126 * 60.00486 * 9 7 2 24 24 H 1.09001 * 109.47299 * 300.00005 * 9 7 2 25 25 H 1.08002 * 120.44715 * 180.02562 * 12 11 10 26 26 H 1.07999 * 120.79976 * 180.02562 * 13 12 11 27 27 H 1.09002 * 109.47152 * 205.00056 * 15 14 13 28 28 H 1.09001 * 109.47194 * 299.99742 * 16 15 14 29 29 H 1.08992 * 109.47399 * 59.99914 * 16 15 14 30 30 H 1.09000 * 109.47437 * 180.02562 * 17 16 15 31 31 H 1.09002 * 109.47508 * 59.99571 * 17 16 15 32 32 H 1.09002 * 109.47067 * 300.00341 * 18 17 16 33 33 H 1.09000 * 109.47312 * 180.02562 * 18 17 16 34 34 H 1.09001 * 109.47375 * 180.02562 * 19 18 17 35 35 H 1.09002 * 109.47497 * 59.99850 * 19 18 17 36 36 H 1.09002 * 109.47075 * 299.99352 * 20 15 14 37 37 H 1.08996 * 109.47407 * 60.00310 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2304 -3.6445 -0.0005 11 7 2.6473 -4.1322 1.1509 12 6 3.5064 -5.1377 1.1901 13 6 3.9669 -5.6778 -0.0007 14 6 3.5050 -5.1390 -1.1909 15 6 3.9748 -5.6910 -2.5122 16 6 5.4363 -6.1277 -2.3918 17 6 5.9134 -6.6875 -3.7333 18 6 5.0516 -7.8914 -4.1191 19 6 3.5902 -7.4548 -4.2395 20 6 3.1129 -6.8950 -2.8974 21 7 2.6510 -4.1287 -1.1517 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 3.8436 -5.5329 2.1369 26 1 4.6681 -6.4992 -0.0007 27 1 3.8876 -4.9215 -3.2792 28 1 6.0503 -5.2699 -2.1173 29 1 5.5235 -6.8972 -1.6248 30 1 6.9544 -6.9990 -3.6475 31 1 5.8262 -5.9177 -4.5000 32 1 5.1388 -8.6613 -3.3524 33 1 5.3918 -8.2906 -5.0746 34 1 2.9761 -8.3126 -4.5138 35 1 3.5029 -6.6850 -5.0061 36 1 3.2002 -7.6646 -2.1304 37 1 2.0718 -6.5840 -2.9832 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259083301.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:15 Heat of formation + Delta-G solvation = 10.927161 kcal Electronic energy + Delta-G solvation = -17413.423537 eV Core-core repulsion = 14768.217506 eV Total energy + Delta-G solvation = -2645.206031 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.57749 -38.39227 -33.84330 -33.33755 -32.04699 -30.83605 -29.97699 -27.98780 -24.33184 -24.00000 -22.67471 -22.07639 -20.81594 -19.49419 -16.87747 -16.45801 -16.17661 -15.24099 -14.83022 -14.40731 -14.29697 -14.23743 -13.93858 -13.43018 -12.69625 -12.55348 -12.31334 -12.27331 -11.93094 -11.34290 -11.24738 -11.23463 -10.90055 -10.64633 -10.62168 -10.43587 -10.34980 -10.21848 -9.86517 -9.60590 -9.52663 -8.57524 -8.47801 -8.39764 -6.03836 -4.06099 1.59713 1.73356 3.35119 3.38021 3.41755 4.30699 4.35743 4.52910 4.62026 4.74224 4.86854 4.87662 5.03171 5.20016 5.27838 5.33352 5.35370 5.40930 5.43316 5.50368 5.53963 5.64071 5.79156 5.92537 5.99995 6.03371 6.06581 6.11433 6.23296 6.30315 6.32532 6.44179 7.11528 7.50624 7.53044 7.78763 7.90128 8.25052 8.93142 8.99981 9.55364 11.07269 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.029298 B = 0.005109 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.456643 B = 5478.851231 C = 5744.952011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.504 4.504 8 H 0.052 0.948 9 C 0.079 3.921 10 C 0.363 3.637 11 N -0.523 5.523 12 C 0.142 3.858 13 C -0.262 4.262 14 C 0.177 3.823 15 C -0.037 4.037 16 C -0.112 4.112 17 C -0.118 4.118 18 C -0.120 4.120 19 C -0.118 4.118 20 C -0.106 4.106 21 N -0.516 5.516 22 H 0.264 0.736 23 H 0.047 0.953 24 H 0.048 0.952 25 H 0.156 0.844 26 H 0.134 0.866 27 H 0.092 0.908 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.963 -15.919 -5.884 19.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.544 4.544 8 H 0.071 0.929 9 C 0.040 3.960 10 C 0.099 3.901 11 N -0.237 5.237 12 C -0.025 4.025 13 C -0.285 4.285 14 C 0.029 3.971 15 C -0.057 4.057 16 C -0.150 4.150 17 C -0.156 4.156 18 C -0.157 4.157 19 C -0.155 4.155 20 C -0.144 4.144 21 N -0.230 5.230 22 H 0.074 0.926 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.173 0.827 26 H 0.152 0.848 27 H 0.110 0.890 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.139 -15.018 -5.871 18.535 hybrid contribution 1.165 0.185 0.150 1.189 sum 10.304 -14.832 -5.721 18.945 Atomic orbital electron populations 1.69934 1.05950 1.27074 1.50176 1.24921 0.94929 0.99135 0.95033 0.86520 0.79485 0.82539 0.78677 1.20184 1.21063 1.20173 1.20733 0.92696 0.89364 1.51557 0.92943 1.18240 0.91289 0.86883 0.99540 1.24440 0.91543 0.92373 0.81746 1.68448 1.12719 1.11036 1.31486 1.23170 0.90785 0.90657 0.97905 1.22483 1.06124 1.05199 0.94655 1.21600 0.90454 0.90161 0.94915 1.20092 0.94630 0.97731 0.93200 1.21626 0.94801 1.00888 0.97660 1.21530 0.98897 0.97869 0.97292 1.21553 0.95270 0.97775 1.01128 1.21541 0.95958 1.00640 0.97406 1.21519 0.99429 0.96319 0.97162 1.68288 1.12506 1.10639 1.31606 0.92641 0.93448 0.93422 0.82685 0.84814 0.88987 0.91680 0.91501 0.91952 0.91761 0.92066 0.92185 0.91938 0.91683 0.91929 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.50 -14.79 9.09 -34.44 -0.31 -15.11 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.08 2.17 5.41 -29.03 -0.16 2.02 16 10 C 0.36 8.81 6.83 -157.19 -1.07 7.73 16 11 N -0.52 -11.65 10.33 -10.72 -0.11 -11.76 16 12 C 0.14 2.44 11.31 -17.20 -0.19 2.25 16 13 C -0.26 -4.06 9.26 -39.31 -0.36 -4.43 16 14 C 0.18 3.10 5.82 -82.24 -0.48 2.62 16 15 C -0.04 -0.51 2.54 -91.77 -0.23 -0.74 16 16 C -0.11 -1.21 4.65 -26.73 -0.12 -1.34 16 17 C -0.12 -1.07 5.92 -26.73 -0.16 -1.22 16 18 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 19 C -0.12 -1.12 5.92 -26.71 -0.16 -1.27 16 20 C -0.11 -1.25 5.19 -26.70 -0.14 -1.39 16 21 N -0.52 -11.49 10.27 -6.99 -0.07 -11.56 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.05 1.35 8.14 -51.93 -0.42 0.93 16 24 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 25 H 0.16 2.03 8.06 -52.49 -0.42 1.60 16 26 H 0.13 1.57 6.44 -52.49 -0.34 1.23 16 27 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.66 6.58 -51.93 -0.34 0.31 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 302.91 15.07 4.56 4.56 Total: -1.00 -31.85 302.91 -9.27 -41.12 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -5.72 Total: -3.09 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -3.65 Total: -10.35 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: 0.55 Total: -49.33 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.85 -9.27 -41.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259083301.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.044 kcal (2) G-P(sol) polarization free energy of solvation -31.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds