Wall clock time and date at job start Mon Mar 30 2020 06:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99933 * 2 1 4 4 H 1.48497 * 109.47316 * 240.00142 * 3 2 1 5 5 H 1.48504 * 109.47165 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46957 * 119.99861 * 3 2 1 7 7 C 1.37875 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00341 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99661 * 359.97438 * 7 2 1 10 10 C 1.50700 * 109.46614 * 180.02562 * 9 7 2 11 11 N 1.31812 * 119.12601 * 90.00552 * 10 9 7 12 12 C 1.32315 * 120.82127 * 179.97438 * 11 10 9 13 13 C 1.38622 * 119.10267 * 359.97438 * 12 11 10 14 14 C 1.38577 * 118.39826 * 359.97438 * 13 12 11 15 15 C 1.50703 * 120.44592 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.46912 * 325.00284 * 15 14 13 17 17 C 1.53001 * 109.46886 * 180.02562 * 16 15 14 18 18 C 1.53002 * 109.46963 * 299.99499 * 17 16 15 19 19 C 1.52997 * 109.47092 * 60.00194 * 18 17 16 20 20 C 1.53002 * 109.46966 * 85.00196 * 15 14 13 21 21 N 1.31782 * 119.12343 * 270.25005 * 10 9 7 22 22 H 0.96998 * 119.99879 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47126 * 60.00486 * 9 7 2 24 24 H 1.09001 * 109.47299 * 300.00005 * 9 7 2 25 25 H 1.08002 * 120.44715 * 180.02562 * 12 11 10 26 26 H 1.07999 * 120.79976 * 180.02562 * 13 12 11 27 27 H 1.09002 * 109.47152 * 205.00056 * 15 14 13 28 28 H 1.09001 * 109.47194 * 299.99742 * 16 15 14 29 29 H 1.08992 * 109.47399 * 59.99914 * 16 15 14 30 30 H 1.09000 * 109.47437 * 180.02562 * 17 16 15 31 31 H 1.09002 * 109.47508 * 59.99571 * 17 16 15 32 32 H 1.09002 * 109.47067 * 300.00341 * 18 17 16 33 33 H 1.09000 * 109.47312 * 180.02562 * 18 17 16 34 34 H 1.09001 * 109.47375 * 180.02562 * 19 18 17 35 35 H 1.09002 * 109.47497 * 59.99850 * 19 18 17 36 36 H 1.09002 * 109.47075 * 299.99352 * 20 15 14 37 37 H 1.08996 * 109.47407 * 60.00310 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2304 -3.6445 -0.0005 11 7 2.6473 -4.1322 1.1509 12 6 3.5064 -5.1377 1.1901 13 6 3.9669 -5.6778 -0.0007 14 6 3.5050 -5.1390 -1.1909 15 6 3.9748 -5.6910 -2.5122 16 6 5.4363 -6.1277 -2.3918 17 6 5.9134 -6.6875 -3.7333 18 6 5.0516 -7.8914 -4.1191 19 6 3.5902 -7.4548 -4.2395 20 6 3.1129 -6.8950 -2.8974 21 7 2.6510 -4.1287 -1.1517 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 3.8436 -5.5329 2.1369 26 1 4.6681 -6.4992 -0.0007 27 1 3.8876 -4.9215 -3.2792 28 1 6.0503 -5.2699 -2.1173 29 1 5.5235 -6.8972 -1.6248 30 1 6.9544 -6.9990 -3.6475 31 1 5.8262 -5.9177 -4.5000 32 1 5.1388 -8.6613 -3.3524 33 1 5.3918 -8.2906 -5.0746 34 1 2.9761 -8.3126 -4.5138 35 1 3.5029 -6.6850 -5.0061 36 1 3.2002 -7.6646 -2.1304 37 1 2.0718 -6.5840 -2.9832 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259083301.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:14 Heat of formation + Delta-G solvation = -8.030486 kcal Electronic energy + Delta-G solvation = -17414.245602 eV Core-core repulsion = 14768.217506 eV Total energy + Delta-G solvation = -2646.028097 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.05086 -39.37283 -35.66658 -34.89736 -33.76268 -31.66631 -31.30616 -29.79398 -26.13135 -25.36794 -23.83342 -23.30650 -22.03724 -20.49247 -18.66119 -18.40770 -17.50664 -16.60466 -16.27489 -15.82523 -15.77361 -15.00107 -14.97331 -14.69473 -14.30277 -14.14149 -13.61677 -13.40527 -13.27549 -13.08302 -12.81667 -12.63047 -12.28821 -12.12481 -12.00666 -11.72737 -11.61659 -11.47220 -11.30834 -11.07985 -10.93718 -10.65788 -10.13762 -10.01588 -8.26721 -6.39019 0.08178 0.30440 1.36718 1.40921 1.49191 2.36114 2.92189 3.01636 3.07954 3.36777 3.60105 3.85633 3.88898 4.02188 4.22335 4.29315 4.37268 4.39324 4.55025 4.60523 4.61954 4.68731 4.78056 4.80699 5.01021 5.14123 5.18161 5.21616 5.26572 5.28316 5.34697 5.40556 5.44369 5.57925 5.61709 5.63733 6.02863 6.31516 6.65846 7.27389 7.39629 8.84934 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.029298 B = 0.005109 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.456643 B = 5478.851231 C = 5744.952011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.972 3.028 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.268 1.268 7 C -0.526 4.526 8 H 0.043 0.957 9 C 0.089 3.911 10 C 0.335 3.665 11 N -0.554 5.554 12 C 0.135 3.865 13 C -0.234 4.234 14 C 0.163 3.837 15 C -0.035 4.035 16 C -0.106 4.106 17 C -0.116 4.116 18 C -0.115 4.115 19 C -0.115 4.115 20 C -0.102 4.102 21 N -0.550 5.550 22 H 0.270 0.730 23 H 0.018 0.982 24 H 0.021 0.979 25 H 0.203 0.797 26 H 0.186 0.814 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.792 -17.763 -5.946 22.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.795 3.205 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.565 4.565 8 H 0.061 0.939 9 C 0.051 3.949 10 C 0.070 3.930 11 N -0.269 5.269 12 C -0.030 4.030 13 C -0.256 4.256 14 C 0.016 3.984 15 C -0.055 4.055 16 C -0.144 4.144 17 C -0.154 4.154 18 C -0.153 4.153 19 C -0.153 4.153 20 C -0.140 4.140 21 N -0.265 5.265 22 H 0.078 0.922 23 H 0.036 0.964 24 H 0.039 0.961 25 H 0.220 0.780 26 H 0.203 0.797 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.983 -16.893 -5.937 21.545 hybrid contribution 0.312 0.625 0.155 0.716 sum 12.295 -16.268 -5.783 21.195 Atomic orbital electron populations 1.70053 1.07550 1.28390 1.50391 1.25878 0.95901 1.03001 0.94085 0.85406 0.78323 0.77709 0.79013 1.19468 1.19655 1.19302 1.20955 0.92361 0.90845 1.52359 0.93893 1.17820 0.91685 0.88683 0.96738 1.23579 0.92994 0.93115 0.83355 1.68311 1.14651 1.13202 1.30737 1.23984 0.89259 0.89091 1.00672 1.22985 1.04771 1.04910 0.92898 1.22370 0.89291 0.88966 0.97743 1.20213 0.97058 0.97705 0.90486 1.21629 0.92023 1.01169 0.99590 1.21534 1.00109 0.97917 0.95829 1.21546 0.93705 0.97627 1.02408 1.21536 0.97431 1.00758 0.95564 1.21500 0.97645 0.95780 0.99088 1.68155 1.14383 1.12829 1.31093 0.92150 0.96378 0.96111 0.78040 0.79686 0.91267 0.92561 0.89381 0.89982 0.92626 0.90789 0.90709 0.90616 0.92538 0.90499 0.94007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.33 13.29 21.45 0.28 -57.05 16 2 C 0.01 0.62 5.46 84.65 0.46 1.08 16 3 Si 0.97 46.04 29.54 68.60 2.03 48.07 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.53 -32.36 9.09 25.60 0.23 -32.13 16 8 H 0.04 2.64 7.74 -2.91 -0.02 2.62 16 9 C 0.09 5.28 5.41 29.10 0.16 5.44 16 10 C 0.34 17.07 6.83 138.75 0.95 18.01 16 11 N -0.55 -25.06 10.33 -187.83 -1.94 -27.00 16 12 C 0.13 4.35 11.31 84.71 0.96 5.31 16 13 C -0.23 -6.55 9.26 22.44 0.21 -6.34 16 14 C 0.16 5.60 5.82 42.56 0.25 5.85 16 15 C -0.04 -0.92 2.54 -11.54 -0.03 -0.95 16 16 C -0.11 -1.97 4.65 30.59 0.14 -1.83 16 17 C -0.12 -1.71 5.92 30.60 0.18 -1.53 16 18 C -0.12 -1.49 5.92 30.59 0.18 -1.31 16 19 C -0.12 -1.94 5.92 30.61 0.18 -1.76 16 20 C -0.10 -2.26 5.19 30.61 0.16 -2.10 16 21 N -0.55 -25.46 10.27 -176.02 -1.81 -27.27 16 22 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 23 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.20 4.43 8.06 -2.91 -0.02 4.41 16 26 H 0.19 3.23 6.44 -2.91 -0.02 3.21 16 27 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 1.26 6.58 -2.39 -0.02 1.25 16 30 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.04 1.12 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -74.00 302.91 3.63 -70.38 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: 1.04 Total: 5.14 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: 4.03 Total: -12.26 kcal Atomic # 7 Polarization: -107.85 SS G_CDS: -3.46 Total: -111.32 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -74.00 3.63 -70.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259083301.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.345 kcal (2) G-P(sol) polarization free energy of solvation -74.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds