Wall clock time and date at job start Mon Mar 30 2020 06:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86793 * 120.00128 * 2 1 4 4 H 1.48500 * 109.47267 * 264.76907 * 3 2 1 5 5 H 1.48498 * 109.47259 * 24.77013 * 3 2 1 6 6 H 1.48506 * 109.47033 * 144.77027 * 3 2 1 7 7 C 1.37881 * 119.99578 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00515 * 5.87193 * 7 2 1 9 9 C 1.50700 * 119.99860 * 185.87034 * 7 2 1 10 10 H 1.09003 * 109.45208 * 335.27425 * 9 7 2 11 11 C 1.53044 * 109.46409 * 95.24541 * 9 7 2 12 12 C 1.53110 * 109.27876 * 179.19562 * 11 9 7 13 13 C 1.53115 * 109.16298 * 302.34854 * 12 11 9 14 14 C 1.53035 * 109.28244 * 57.65379 * 13 12 11 15 15 N 1.46845 * 109.46327 * 215.30143 * 9 7 2 16 16 C 1.46899 * 110.99936 * 54.14521 * 15 9 7 17 17 C 1.50704 * 109.47049 * 190.25628 * 16 15 9 18 18 C 1.38222 * 119.61603 * 95.02009 * 17 16 15 19 19 C 1.38637 * 119.15874 * 179.97438 * 18 17 16 20 20 C 1.38673 * 118.41831 * 359.74983 * 19 18 17 21 21 C 1.38180 * 119.16431 * 0.49118 * 20 19 18 22 22 N 1.31854 * 119.61522 * 274.99981 * 17 16 15 23 23 H 0.97005 * 120.00158 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.49773 * 59.25338 * 11 9 7 25 25 H 1.08996 * 109.53715 * 299.16050 * 11 9 7 26 26 H 1.08997 * 109.52384 * 182.44041 * 12 11 9 27 27 H 1.08999 * 109.52730 * 62.25210 * 12 11 9 28 28 H 1.09003 * 109.50324 * 297.71070 * 13 12 11 29 29 H 1.09001 * 109.50323 * 177.59899 * 13 12 11 30 30 H 1.08995 * 109.46613 * 180.80911 * 14 13 12 31 31 H 1.09003 * 109.46267 * 60.83565 * 14 13 12 32 32 H 1.08999 * 109.47058 * 70.25982 * 16 15 9 33 33 H 1.08996 * 109.47336 * 310.25437 * 16 15 9 34 34 H 1.07996 * 120.42584 * 0.02562 * 18 17 16 35 35 H 1.08002 * 120.78848 * 179.97438 * 19 18 17 36 36 H 1.08007 * 120.41475 * 180.25021 * 20 19 18 37 37 H 1.07998 * 119.61614 * 179.77610 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.6072 1.9825 -1.3942 5 1 1.3957 2.6820 0.5866 6 1 3.4871 1.4745 0.8077 7 6 2.0044 -1.1941 0.0005 8 1 1.4687 -2.1270 -0.0947 9 6 3.5055 -1.1976 0.1340 10 1 3.9031 -0.2442 -0.2142 11 6 3.8865 -1.4033 1.6019 12 6 5.4120 -1.4262 1.7298 13 6 5.9744 -2.5377 0.8395 14 6 5.5330 -2.2991 -0.6063 15 7 4.0662 -2.2866 -0.6758 16 6 3.6060 -2.1981 -2.0680 17 6 3.9892 -3.4558 -2.8047 18 6 3.0769 -4.4885 -2.9136 19 6 3.4392 -5.6409 -3.5937 20 6 4.7094 -5.7096 -4.1459 21 6 5.5693 -4.6390 -3.9921 22 7 5.1906 -3.5581 -3.3382 23 1 -0.4850 0.8401 0.0004 24 1 3.4774 -2.3501 1.9547 25 1 3.4832 -0.5869 2.2010 26 1 5.6878 -1.6158 2.7672 27 1 5.8186 -0.4656 1.4137 28 1 5.5983 -3.5023 1.1804 29 1 7.0631 -2.5313 0.8934 30 1 5.9199 -3.0967 -1.2405 31 1 5.9211 -1.3406 -0.9510 32 1 4.0711 -1.3385 -2.5505 33 1 2.5223 -2.0826 -2.0858 34 1 2.0941 -4.3985 -2.4751 35 1 2.7473 -6.4641 -3.6943 36 1 5.0239 -6.5905 -4.6860 37 1 6.5615 -4.6862 -4.4160 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259119274.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:31 Heat of formation + Delta-G solvation = 32.460338 kcal Electronic energy + Delta-G solvation = -18151.270791 eV Core-core repulsion = 15506.998509 eV Total energy + Delta-G solvation = -2644.272283 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.95146 -38.04266 -33.49529 -32.82644 -32.08022 -30.69181 -30.09626 -26.32144 -25.02574 -23.23652 -22.68394 -21.23140 -20.66818 -18.76775 -16.93595 -16.49033 -15.93523 -15.39973 -15.16502 -14.17576 -13.95187 -13.61736 -13.48516 -13.13234 -12.95721 -12.80780 -12.50830 -12.15841 -11.94703 -11.33559 -11.07792 -10.94773 -10.71923 -10.69046 -10.19770 -9.87207 -9.80116 -9.65370 -9.54895 -9.08548 -9.00010 -8.65965 -8.56543 -7.27310 -6.12788 -4.11160 1.40194 1.55097 3.25122 3.34247 3.37059 4.04076 4.37589 4.62160 4.96749 5.02613 5.11920 5.20749 5.31818 5.46519 5.55671 5.59421 5.76367 5.88883 6.00095 6.12150 6.14058 6.22829 6.31788 6.41839 6.48316 6.51111 6.59098 6.63181 6.71584 6.77035 6.89431 7.00840 7.09053 7.31659 7.62535 8.04230 8.11137 8.32776 8.64757 8.97139 9.51662 10.99687 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022692 B = 0.007964 C = 0.006642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.604724 B = 3514.788274 C = 4214.567808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.075 3.925 3 Si 0.868 3.132 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.506 4.506 8 H 0.082 0.918 9 C 0.186 3.814 10 H 0.002 0.998 11 C -0.102 4.102 12 C -0.126 4.126 13 C -0.110 4.110 14 C 0.053 3.947 15 N -0.522 5.522 16 C 0.108 3.892 17 C 0.152 3.848 18 C -0.149 4.149 19 C -0.080 4.080 20 C -0.188 4.188 21 C 0.091 3.909 22 N -0.485 5.485 23 H 0.264 0.736 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.020 0.980 32 H 0.036 0.964 33 H 0.114 0.886 34 H 0.139 0.861 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.519 -7.977 -4.845 13.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.128 4.128 3 Si 0.696 3.304 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.544 4.544 8 H 0.100 0.900 9 C 0.080 3.920 10 H 0.020 0.980 11 C -0.141 4.141 12 C -0.164 4.164 13 C -0.148 4.148 14 C -0.076 4.076 15 N -0.247 5.247 16 C -0.021 4.021 17 C 0.014 3.986 18 C -0.170 4.170 19 C -0.106 4.106 20 C -0.209 4.209 21 C -0.066 4.066 22 N -0.195 5.195 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.038 0.962 32 H 0.054 0.946 33 H 0.132 0.868 34 H 0.157 0.843 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 9.752 -7.577 -4.548 13.161 hybrid contribution 0.166 0.927 -0.461 1.048 sum 9.918 -6.651 -5.009 12.950 Atomic orbital electron populations 1.69890 1.06132 1.26990 1.50198 1.24983 0.94666 0.98669 0.94472 0.86986 0.80389 0.84167 0.78874 1.20257 1.21407 1.18952 1.20919 0.88698 0.94722 1.50096 0.89994 1.19713 0.95519 0.87293 0.89505 0.98007 1.21743 0.92142 1.01555 0.98637 1.21712 0.98396 0.97944 0.98335 1.21524 0.98420 0.99382 0.95504 1.22105 0.89693 0.99649 0.96124 1.61968 1.06072 1.48638 1.08011 1.20953 1.02967 0.90355 0.87777 1.21553 0.88400 0.96152 0.92463 1.22076 1.01832 0.93722 0.99353 1.21563 0.96109 0.97643 0.95316 1.22004 0.95441 1.00441 1.02981 1.22653 0.99352 0.89175 0.95426 1.67583 1.17723 1.25441 1.08717 0.92565 0.91893 0.92696 0.93184 0.93319 0.91797 0.93011 0.91045 0.96215 0.94574 0.86800 0.84318 0.85297 0.85557 0.83505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.96 55.43 0.77 -25.54 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 3 Si 0.87 21.22 27.02 -169.99 -4.59 16.63 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.26 -6.29 6.78 56.52 0.38 -5.90 16 7 C -0.51 -13.56 7.22 -34.44 -0.25 -13.81 16 8 H 0.08 2.40 8.03 -52.49 -0.42 1.97 16 9 C 0.19 4.37 1.52 -68.87 -0.10 4.26 16 10 H 0.00 0.06 5.24 -51.93 -0.27 -0.21 16 11 C -0.10 -2.19 5.36 -26.65 -0.14 -2.34 16 12 C -0.13 -2.28 6.00 -26.62 -0.16 -2.44 16 13 C -0.11 -1.89 6.09 -26.65 -0.16 -2.06 16 14 C 0.05 1.00 5.25 -3.83 -0.02 0.98 16 15 N -0.52 -11.10 4.47 -229.51 -1.03 -12.12 16 16 C 0.11 2.21 5.07 -4.97 -0.03 2.18 16 17 C 0.15 2.73 5.71 -82.59 -0.47 2.26 16 18 C -0.15 -2.38 9.72 -39.44 -0.38 -2.77 16 19 C -0.08 -1.04 10.18 -39.27 -0.40 -1.44 16 20 C -0.19 -2.27 10.11 -39.44 -0.40 -2.67 16 21 C 0.09 1.24 11.18 -17.55 -0.20 1.04 16 22 N -0.48 -8.24 8.71 -9.47 -0.08 -8.32 16 23 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 24 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 25 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.33 6.02 -51.93 -0.31 1.02 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.04 0.76 8.12 -51.93 -0.42 0.34 16 33 H 0.11 2.52 6.43 -51.93 -0.33 2.19 16 34 H 0.14 2.18 8.06 -52.49 -0.42 1.76 16 35 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 37 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 295.38 15.07 4.45 4.45 Total: -1.00 -29.35 295.38 -8.85 -38.20 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -5.57 Total: 1.51 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -2.81 Total: -14.80 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: -0.34 Total: -45.99 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.59 Total: 16.63 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.35 -8.85 -38.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259119274.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.665 kcal (2) G-P(sol) polarization free energy of solvation -29.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds