Wall clock time and date at job start Mon Mar 30 2020 06:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86793 * 120.00128 * 2 1 4 4 H 1.48500 * 109.47267 * 264.76907 * 3 2 1 5 5 H 1.48498 * 109.47259 * 24.77013 * 3 2 1 6 6 H 1.48506 * 109.47033 * 144.77027 * 3 2 1 7 7 C 1.37881 * 119.99578 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00515 * 5.87193 * 7 2 1 9 9 C 1.50700 * 119.99860 * 185.87034 * 7 2 1 10 10 H 1.09003 * 109.45208 * 335.27425 * 9 7 2 11 11 C 1.53044 * 109.46409 * 95.24541 * 9 7 2 12 12 C 1.53110 * 109.27876 * 179.19562 * 11 9 7 13 13 C 1.53115 * 109.16298 * 302.34854 * 12 11 9 14 14 C 1.53035 * 109.28244 * 57.65379 * 13 12 11 15 15 N 1.46845 * 109.46327 * 215.30143 * 9 7 2 16 16 C 1.46899 * 110.99936 * 54.14521 * 15 9 7 17 17 C 1.50704 * 109.47049 * 190.25628 * 16 15 9 18 18 C 1.38222 * 119.61603 * 95.02009 * 17 16 15 19 19 C 1.38637 * 119.15874 * 179.97438 * 18 17 16 20 20 C 1.38673 * 118.41831 * 359.74983 * 19 18 17 21 21 C 1.38180 * 119.16431 * 0.49118 * 20 19 18 22 22 N 1.31854 * 119.61522 * 274.99981 * 17 16 15 23 23 H 0.97005 * 120.00158 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.49773 * 59.25338 * 11 9 7 25 25 H 1.08996 * 109.53715 * 299.16050 * 11 9 7 26 26 H 1.08997 * 109.52384 * 182.44041 * 12 11 9 27 27 H 1.08999 * 109.52730 * 62.25210 * 12 11 9 28 28 H 1.09003 * 109.50324 * 297.71070 * 13 12 11 29 29 H 1.09001 * 109.50323 * 177.59899 * 13 12 11 30 30 H 1.08995 * 109.46613 * 180.80911 * 14 13 12 31 31 H 1.09003 * 109.46267 * 60.83565 * 14 13 12 32 32 H 1.08999 * 109.47058 * 70.25982 * 16 15 9 33 33 H 1.08996 * 109.47336 * 310.25437 * 16 15 9 34 34 H 1.07996 * 120.42584 * 0.02562 * 18 17 16 35 35 H 1.08002 * 120.78848 * 179.97438 * 19 18 17 36 36 H 1.08007 * 120.41475 * 180.25021 * 20 19 18 37 37 H 1.07998 * 119.61614 * 179.77610 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.6072 1.9825 -1.3942 5 1 1.3957 2.6820 0.5866 6 1 3.4871 1.4745 0.8077 7 6 2.0044 -1.1941 0.0005 8 1 1.4687 -2.1270 -0.0947 9 6 3.5055 -1.1976 0.1340 10 1 3.9031 -0.2442 -0.2142 11 6 3.8865 -1.4033 1.6019 12 6 5.4120 -1.4262 1.7298 13 6 5.9744 -2.5377 0.8395 14 6 5.5330 -2.2991 -0.6063 15 7 4.0662 -2.2866 -0.6758 16 6 3.6060 -2.1981 -2.0680 17 6 3.9892 -3.4558 -2.8047 18 6 3.0769 -4.4885 -2.9136 19 6 3.4392 -5.6409 -3.5937 20 6 4.7094 -5.7096 -4.1459 21 6 5.5693 -4.6390 -3.9921 22 7 5.1906 -3.5581 -3.3382 23 1 -0.4850 0.8401 0.0004 24 1 3.4774 -2.3501 1.9547 25 1 3.4832 -0.5869 2.2010 26 1 5.6878 -1.6158 2.7672 27 1 5.8186 -0.4656 1.4137 28 1 5.5983 -3.5023 1.1804 29 1 7.0631 -2.5313 0.8934 30 1 5.9199 -3.0967 -1.2405 31 1 5.9211 -1.3406 -0.9510 32 1 4.0711 -1.3385 -2.5505 33 1 2.5223 -2.0826 -2.0858 34 1 2.0941 -4.3985 -2.4751 35 1 2.7473 -6.4641 -3.6943 36 1 5.0239 -6.5905 -4.6860 37 1 6.5615 -4.6862 -4.4160 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259119274.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:31 Heat of formation + Delta-G solvation = 13.836960 kcal Electronic energy + Delta-G solvation = -18152.078361 eV Core-core repulsion = 15506.998509 eV Total energy + Delta-G solvation = -2645.079853 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.18144 -39.63572 -34.95780 -34.84976 -33.25821 -32.16540 -31.73866 -27.88501 -26.84950 -24.42085 -24.07433 -22.86159 -22.15253 -20.44304 -19.01901 -17.60166 -17.23249 -17.03863 -16.38609 -15.94666 -15.64804 -15.03175 -14.93399 -14.58432 -14.55923 -14.33728 -14.04689 -13.66645 -13.35327 -12.92930 -12.89913 -12.53484 -12.44901 -12.29839 -11.86676 -11.74956 -11.52076 -11.22062 -10.85751 -10.73342 -10.68332 -10.27294 -9.85969 -8.99257 -8.30355 -6.31430 0.25218 0.44993 1.28318 1.31325 1.40705 2.30533 2.80851 3.04755 3.32954 3.58230 3.88023 4.07489 4.09102 4.14249 4.25469 4.29794 4.33601 4.50772 4.60611 4.62473 4.77007 4.79057 4.87742 4.94735 5.01070 5.02582 5.14158 5.19773 5.24985 5.33062 5.38059 5.42481 5.52605 5.72635 5.89381 6.11549 6.34879 6.69607 6.76780 7.14983 7.34110 8.85901 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022692 B = 0.007964 C = 0.006642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.604724 B = 3514.788274 C = 4214.567808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.023 3.977 3 Si 0.925 3.075 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.250 1.250 7 C -0.499 4.499 8 H 0.042 0.958 9 C 0.188 3.812 10 H -0.008 1.008 11 C -0.103 4.103 12 C -0.120 4.120 13 C -0.105 4.105 14 C 0.055 3.945 15 N -0.528 5.528 16 C 0.116 3.884 17 C 0.126 3.874 18 C -0.169 4.169 19 C -0.075 4.075 20 C -0.170 4.170 21 C 0.085 3.915 22 N -0.508 5.508 23 H 0.266 0.734 24 H 0.053 0.947 25 H 0.045 0.955 26 H 0.079 0.921 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.013 0.987 32 H 0.021 0.979 33 H 0.081 0.919 34 H 0.125 0.875 35 H 0.162 0.838 36 H 0.171 0.829 37 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.485 -9.388 -5.360 16.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.175 4.175 3 Si 0.750 3.250 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.174 1.174 7 C -0.537 4.537 8 H 0.060 0.940 9 C 0.081 3.919 10 H 0.009 0.991 11 C -0.141 4.141 12 C -0.157 4.157 13 C -0.143 4.143 14 C -0.073 4.073 15 N -0.253 5.253 16 C -0.013 4.013 17 C -0.011 4.011 18 C -0.189 4.189 19 C -0.101 4.101 20 C -0.189 4.189 21 C -0.072 4.072 22 N -0.219 5.219 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.097 0.903 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.031 0.969 32 H 0.039 0.961 33 H 0.099 0.901 34 H 0.143 0.857 35 H 0.179 0.821 36 H 0.189 0.811 37 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 12.734 -8.998 -5.059 16.392 hybrid contribution -0.749 1.185 -0.410 1.461 sum 11.985 -7.812 -5.469 15.316 Atomic orbital electron populations 1.70018 1.07759 1.27872 1.52354 1.25681 0.95308 1.02027 0.94509 0.86058 0.79676 0.80127 0.79096 1.20030 1.20849 1.17402 1.21031 0.90730 0.93120 1.48851 0.93984 1.19611 0.93154 0.87692 0.91428 0.99060 1.21655 0.95274 1.00658 0.96537 1.21660 0.95130 0.98527 1.00420 1.21532 1.00404 0.98863 0.93504 1.22164 0.87733 0.99482 0.97934 1.61921 1.07879 1.47286 1.08229 1.20708 1.00751 0.91927 0.87891 1.21064 0.89918 0.95665 0.94410 1.22065 1.01151 0.94937 1.00786 1.21943 0.97335 0.97014 0.93789 1.22481 0.94163 1.01106 1.01184 1.23306 1.01036 0.88491 0.94391 1.67476 1.17187 1.27439 1.09750 0.92491 0.92800 0.93629 0.90282 0.93108 0.91847 0.89640 0.90429 0.96907 0.96105 0.90077 0.85727 0.82080 0.81143 0.80154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.85 13.96 21.45 0.30 -57.55 16 2 C 0.02 1.33 5.47 84.66 0.46 1.79 16 3 Si 0.93 44.70 27.02 68.60 1.85 46.55 16 4 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 6 H -0.25 -11.40 6.78 99.48 0.67 -10.73 16 7 C -0.50 -28.17 7.22 25.60 0.18 -27.99 16 8 H 0.04 2.65 8.03 -2.91 -0.02 2.63 16 9 C 0.19 9.04 1.52 44.19 0.07 9.11 16 10 H -0.01 -0.40 5.24 -2.39 -0.01 -0.42 16 11 C -0.10 -4.38 5.36 30.65 0.16 -4.22 16 12 C -0.12 -4.03 6.00 30.67 0.18 -3.84 16 13 C -0.11 -3.33 6.09 30.64 0.19 -3.14 16 14 C 0.05 2.04 5.25 86.32 0.45 2.49 16 15 N -0.53 -23.02 4.47 -880.03 -3.94 -26.95 16 16 C 0.12 5.01 5.07 85.56 0.43 5.45 16 17 C 0.13 4.61 5.71 42.55 0.24 4.85 16 18 C -0.17 -5.45 9.72 22.36 0.22 -5.23 16 19 C -0.08 -1.76 10.18 22.47 0.23 -1.53 16 20 C -0.17 -3.37 10.11 22.36 0.23 -3.14 16 21 C 0.09 2.04 11.18 84.67 0.95 2.99 16 22 N -0.51 -16.73 8.71 -183.89 -1.60 -18.33 16 23 H 0.27 15.40 8.31 -92.70 -0.77 14.62 16 24 H 0.05 2.35 8.14 -2.38 -0.02 2.34 16 25 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.09 2.17 8.14 -2.39 -0.02 2.16 16 30 H 0.08 2.80 6.02 -2.39 -0.01 2.78 16 31 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.02 0.93 8.12 -2.39 -0.02 0.91 16 33 H 0.08 3.94 6.43 -2.39 -0.02 3.93 16 34 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 35 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 36 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 37 H 0.18 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -66.99 295.38 1.62 -65.38 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 1.00 Total: 13.31 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: 4.00 Total: -22.41 kcal Atomic # 7 Polarization: -97.59 SS G_CDS: -5.24 Total: -102.83 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.85 Total: 46.55 kcal Total: -66.99 1.62 -65.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259119274.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.216 kcal (2) G-P(sol) polarization free energy of solvation -66.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds