Wall clock time and date at job start Mon Mar 30 2020 06:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99983 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00075 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.46721 * 300.01719 * 9 7 2 11 11 C 1.53038 * 109.46487 * 60.00352 * 9 7 2 12 12 C 1.53113 * 109.28012 * 179.19155 * 11 9 7 13 13 C 1.53113 * 109.16201 * 302.34313 * 12 11 9 14 14 C 1.53036 * 109.27998 * 57.65622 * 13 12 11 15 15 N 1.46849 * 109.45917 * 180.02562 * 9 7 2 16 16 C 1.46908 * 110.99725 * 54.14912 * 15 9 7 17 17 C 1.50707 * 109.47046 * 169.99892 * 16 15 9 18 18 C 1.38647 * 120.78412 * 269.72056 * 17 16 15 19 19 C 1.38208 * 119.15720 * 179.75750 * 18 17 16 20 20 N 1.31870 * 120.76335 * 0.52497 * 19 18 17 21 21 C 1.31863 * 121.72782 * 359.74565 * 20 19 18 22 22 C 1.38209 * 120.76662 * 359.97438 * 21 20 19 23 23 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.50109 * 299.13447 * 11 9 7 25 25 H 1.08999 * 109.50263 * 59.20444 * 11 9 7 26 26 H 1.09007 * 109.52037 * 62.24763 * 12 11 9 27 27 H 1.09004 * 109.52349 * 182.37188 * 12 11 9 28 28 H 1.09002 * 109.50524 * 177.59228 * 13 12 11 29 29 H 1.08999 * 109.50524 * 297.70942 * 13 12 11 30 30 H 1.08996 * 109.46673 * 60.83360 * 14 13 12 31 31 H 1.09002 * 109.46496 * 180.81996 * 14 13 12 32 32 H 1.08997 * 109.46451 * 289.99598 * 16 15 9 33 33 H 1.08995 * 109.47190 * 49.99822 * 16 15 9 34 34 H 1.07994 * 120.42726 * 359.97438 * 18 17 16 35 35 H 1.08002 * 119.61941 * 180.29099 * 19 18 17 36 36 H 1.08003 * 119.62522 * 179.97438 * 21 20 19 37 37 H 1.07998 * 120.42478 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 1 0.6238 -2.5565 0.8901 11 6 0.3718 -2.5803 -1.2494 12 6 -0.3763 -3.9162 -1.2554 13 6 0.6390 -5.0611 -1.2042 14 6 1.5105 -4.9082 0.0444 15 7 2.2055 -3.6151 0.0018 16 6 3.1572 -3.4926 1.1141 17 6 3.9568 -4.7645 1.2336 18 6 3.5205 -5.8038 2.0410 19 6 4.2777 -6.9572 2.1218 20 7 5.4070 -7.0710 1.4506 21 6 5.8552 -6.1012 0.6777 22 6 5.1489 -4.9208 0.5431 23 1 -0.4850 0.8401 0.0004 24 1 -0.3468 -1.7608 -1.2427 25 1 0.9970 -2.5087 -2.1394 26 1 -1.0311 -3.9709 -0.3856 27 1 -0.9716 -3.9964 -2.1650 28 1 0.1114 -6.0141 -1.1650 29 1 1.2685 -5.0294 -2.0935 30 1 0.8821 -4.9539 0.9338 31 1 2.2442 -5.7137 0.0762 32 1 3.8306 -2.6565 0.9256 33 1 2.6117 -3.3179 2.0415 34 1 2.5990 -5.7146 2.5969 35 1 3.9424 -7.7732 2.7447 36 1 6.7849 -6.2306 0.1435 37 1 5.5209 -4.1303 -0.0918 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259290513.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:20 Heat of formation + Delta-G solvation = 31.492306 kcal Electronic energy + Delta-G solvation = -18093.750449 eV Core-core repulsion = 15449.436190 eV Total energy + Delta-G solvation = -2644.314260 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.08121 -38.02009 -34.03828 -32.96208 -31.20203 -31.01830 -29.43847 -26.35241 -25.08974 -23.32691 -22.70340 -21.31685 -20.70430 -18.68521 -16.63710 -16.19828 -16.00308 -15.41514 -15.24959 -14.41428 -13.80611 -13.65709 -13.49484 -13.34704 -13.18754 -12.65224 -12.24884 -12.14001 -11.75277 -11.25595 -11.00226 -10.98460 -10.75375 -10.55411 -10.23737 -10.07368 -9.63704 -9.46385 -9.36930 -9.18440 -8.91859 -8.75440 -8.44442 -7.23499 -6.06962 -4.12270 1.33015 1.48152 3.25651 3.34142 3.37557 3.99979 4.36112 4.60804 4.90821 5.00571 5.08663 5.25589 5.33183 5.38694 5.61795 5.66368 5.80314 5.84183 5.88769 6.09786 6.18053 6.21648 6.34738 6.37696 6.48262 6.56187 6.70406 6.80158 6.84942 6.91368 7.05799 7.22254 7.51159 7.65472 7.78026 8.11391 8.12829 8.26792 8.52660 8.94254 9.53322 10.99342 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023795 B = 0.007189 C = 0.005915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.445458 B = 3893.816260 C = 4732.476236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.895 3.105 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.220 3.780 10 H 0.000 1.000 11 C -0.104 4.104 12 C -0.123 4.123 13 C -0.111 4.111 14 C 0.053 3.947 15 N -0.525 5.525 16 C 0.100 3.900 17 C -0.023 4.023 18 C -0.170 4.170 19 C 0.090 3.910 20 N -0.497 5.497 21 C 0.091 3.909 22 C -0.155 4.155 23 H 0.260 0.740 24 H 0.094 0.906 25 H 0.043 0.957 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.019 0.981 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.039 0.961 34 H 0.129 0.871 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.820 -9.424 1.532 10.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.547 4.547 8 H 0.082 0.918 9 C 0.114 3.886 10 H 0.017 0.983 11 C -0.143 4.143 12 C -0.161 4.161 13 C -0.149 4.149 14 C -0.075 4.075 15 N -0.250 5.250 16 C -0.027 4.027 17 C -0.031 4.031 18 C -0.191 4.191 19 C -0.067 4.067 20 N -0.206 5.206 21 C -0.065 4.065 22 C -0.175 4.175 23 H 0.070 0.930 24 H 0.112 0.888 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.057 0.943 34 H 0.147 0.853 35 H 0.167 0.833 36 H 0.168 0.832 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.398 -10.023 1.168 11.444 hybrid contribution -0.657 1.666 0.662 1.909 sum 4.741 -8.358 1.830 9.781 Atomic orbital electron populations 1.69893 1.05903 1.26486 1.50713 1.24932 0.94868 0.99157 0.95097 0.86488 0.80098 0.83571 0.77551 1.19725 1.20982 1.21134 1.21211 0.93306 0.89746 1.50432 0.91826 1.19268 0.88738 0.86983 0.93601 0.98283 1.21636 0.98992 0.95040 0.98590 1.21691 0.97393 0.97111 0.99862 1.21534 0.97459 0.97531 0.98342 1.22112 0.95821 0.93079 0.96503 1.62233 1.19107 1.02469 1.41220 1.21017 0.95074 0.92707 0.93926 1.20642 0.94012 0.96067 0.92405 1.22118 1.01377 0.94741 1.00840 1.22618 0.90649 0.96622 0.96763 1.67612 1.14208 1.31265 1.07548 1.22692 0.99181 0.89344 0.95330 1.22095 0.95711 0.99381 1.00352 0.92959 0.88767 0.93790 0.93413 0.93687 0.93330 0.91937 0.96312 0.92196 0.88945 0.94262 0.85316 0.83302 0.83167 0.84604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.67 11.33 55.43 0.63 -24.04 16 2 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 3 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -13.35 8.00 -34.44 -0.28 -13.63 16 8 H 0.06 1.66 6.34 -52.48 -0.33 1.32 16 9 C 0.22 5.34 1.79 -68.88 -0.12 5.21 16 10 H 0.00 -0.01 8.14 -51.93 -0.42 -0.43 16 11 C -0.10 -2.44 5.14 -26.65 -0.14 -2.58 16 12 C -0.12 -2.40 6.00 -26.61 -0.16 -2.56 16 13 C -0.11 -1.96 6.09 -26.65 -0.16 -2.12 16 14 C 0.05 0.98 4.61 -3.83 -0.02 0.96 16 15 N -0.52 -10.90 4.63 -229.50 -1.06 -11.96 16 16 C 0.10 1.88 4.85 -4.97 -0.02 1.86 16 17 C -0.02 -0.36 4.13 -104.32 -0.43 -0.79 16 18 C -0.17 -2.43 7.97 -39.44 -0.31 -2.74 16 19 C 0.09 1.20 11.18 -17.55 -0.20 1.01 16 20 N -0.50 -7.25 10.36 -13.25 -0.14 -7.38 16 21 C 0.09 1.24 11.18 -17.55 -0.20 1.04 16 22 C -0.16 -2.26 9.82 -39.44 -0.39 -2.65 16 23 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 24 H 0.09 2.45 6.10 -51.93 -0.32 2.13 16 25 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 1.04 5.65 -51.93 -0.29 0.74 16 32 H 0.09 1.82 6.52 -51.93 -0.34 1.48 16 33 H 0.04 0.76 8.04 -51.93 -0.42 0.35 16 34 H 0.13 1.70 8.06 -52.49 -0.42 1.27 16 35 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.15 1.60 8.06 -52.48 -0.42 1.17 16 37 H 0.14 1.86 8.06 -52.49 -0.42 1.43 16 LS Contribution 293.42 15.07 4.42 4.42 Total: -1.00 -28.09 293.42 -9.17 -37.26 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -5.48 Total: 1.43 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -2.52 Total: -15.45 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: -0.57 Total: -43.38 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.09 -9.17 -37.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259290513.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.754 kcal (2) G-P(sol) polarization free energy of solvation -28.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds