Wall clock time and date at job start Mon Mar 30 2020 05:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09004 * 109.17585 * 55.70196 * 3 2 1 5 5 C 1.51431 * 109.18989 * 174.99975 * 3 2 1 6 6 C 1.52140 * 113.46101 * 185.82646 * 5 3 2 7 7 C 1.52880 * 110.80255 * 292.46224 * 6 5 3 8 8 H 1.08996 * 109.59790 * 323.55926 * 7 6 5 9 9 C 1.50703 * 109.59982 * 203.08054 * 7 6 5 10 10 H 1.07995 * 120.00134 * 0.02562 * 9 7 6 11 11 C 1.37880 * 119.99695 * 180.02562 * 9 7 6 12 12 N 1.31512 * 119.99775 * 180.02562 * 11 9 7 13 13 Si 1.86800 * 120.00118 * 359.97438 * 11 9 7 14 14 H 1.48501 * 109.46785 * 90.00331 * 13 11 9 15 15 H 1.48501 * 109.47156 * 210.00288 * 13 11 9 16 16 H 1.48500 * 109.47222 * 330.00800 * 13 11 9 17 17 C 1.51653 * 108.68688 * 83.32074 * 7 6 5 18 18 C 1.38027 * 120.00597 * 111.43701 * 17 7 6 19 19 C 1.38389 * 119.63818 * 179.21821 * 18 17 7 20 20 C 1.38301 * 120.07146 * 359.88664 * 19 18 17 21 21 C 1.38169 * 120.22890 * 0.36264 * 20 19 18 22 22 C 1.37942 * 119.45015 * 291.26468 * 17 7 6 23 23 O 1.36146 * 120.36124 * 2.69659 * 22 17 7 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 29 29 H 1.08997 * 108.68072 * 306.85785 * 5 3 2 30 30 H 1.08996 * 108.68286 * 64.92752 * 5 3 2 31 31 H 1.09008 * 109.20780 * 52.80332 * 6 5 3 32 32 H 1.09005 * 109.21049 * 172.11664 * 6 5 3 33 33 H 0.97000 * 120.00267 * 179.97438 * 12 11 9 34 34 H 1.07990 * 120.18526 * 359.19165 * 18 17 7 35 35 H 1.08000 * 119.96770 * 179.91367 * 19 18 17 36 36 H 1.07998 * 119.88086 * 180.38687 * 20 19 18 37 37 H 1.08003 * 120.16102 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6124 1.9734 0.8505 5 6 3.5492 1.4368 0.1247 6 6 4.1497 2.8265 0.2759 7 6 3.9731 3.6369 -1.0083 8 1 4.0808 2.9811 -1.8722 9 6 5.0117 4.7275 -1.0647 10 1 5.7283 4.8327 -0.2636 11 6 5.0470 5.5910 -2.1391 12 7 5.9536 6.5423 -2.1885 13 14 3.8079 5.4085 -3.5251 14 1 2.6055 6.2266 -3.2248 15 1 4.4169 5.8721 -4.7977 16 1 3.4164 3.9819 -3.6544 17 6 2.5875 4.2535 -1.0072 18 6 2.4402 5.6200 -0.8804 19 6 1.1731 6.1761 -0.8966 20 6 0.0621 5.3651 -1.0414 21 6 0.2108 3.9969 -1.1631 22 6 1.4824 3.4383 -1.1371 23 8 1.6290 2.0867 -1.2104 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.8254 0.8404 0.9942 30 1 3.9713 0.9710 -0.7657 31 1 3.6542 3.3438 1.0976 32 1 5.2127 2.7355 0.4994 33 1 5.9787 7.1496 -2.9445 34 1 3.3089 6.2517 -0.7688 35 1 1.0515 7.2445 -0.7964 36 1 -0.9249 5.8030 -1.0599 37 1 -0.6574 3.3647 -1.2766 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259639387.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:54 Heat of formation + Delta-G solvation = -24.822961 kcal Electronic energy + Delta-G solvation = -18713.952671 eV Core-core repulsion = 16034.903647 eV Total energy + Delta-G solvation = -2679.049024 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.04434 -37.27817 -35.03052 -33.69736 -32.12580 -30.39695 -29.44608 -27.38923 -25.52543 -23.09333 -21.74866 -21.69823 -20.39172 -19.28230 -17.57836 -16.83659 -15.53916 -15.09978 -14.58721 -14.24012 -14.18990 -13.95819 -13.45852 -13.02027 -12.90452 -12.59525 -12.49169 -12.08686 -11.77318 -11.49928 -11.39825 -11.23108 -10.98600 -10.80096 -10.42553 -10.22278 -9.89258 -9.74056 -9.63283 -9.37562 -9.06909 -8.59910 -7.93080 -7.74592 -6.12553 -4.12988 1.86893 2.08191 3.35376 3.44167 3.53311 3.96506 4.43080 4.55944 4.91785 5.13786 5.15403 5.27866 5.50397 5.52996 5.59724 5.67259 5.70870 5.76698 5.83737 5.95298 6.07805 6.09697 6.20499 6.31572 6.32767 6.34810 6.45830 6.61116 6.67546 6.83475 6.89475 7.04929 7.23470 7.27333 7.47462 7.56874 7.79533 8.15284 8.46962 8.91304 9.49287 10.98058 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024113 B = 0.010259 C = 0.008335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.906762 B = 2728.576453 C = 3358.653411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C 0.097 3.903 4 H 0.057 0.943 5 C -0.147 4.147 6 C -0.097 4.097 7 C 0.047 3.953 8 H 0.044 0.956 9 C -0.516 4.516 10 H 0.078 0.922 11 C 0.079 3.921 12 N -0.896 5.896 13 Si 0.858 3.142 14 H -0.260 1.260 15 H -0.295 1.295 16 H -0.261 1.261 17 C -0.093 4.093 18 C -0.083 4.083 19 C -0.141 4.141 20 C -0.127 4.127 21 C -0.149 4.149 22 C 0.083 3.917 23 O -0.323 6.323 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.265 0.735 34 H 0.152 0.848 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.577 -8.176 4.558 14.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C 0.042 3.958 4 H 0.075 0.925 5 C -0.184 4.184 6 C -0.134 4.134 7 C 0.029 3.971 8 H 0.062 0.938 9 C -0.553 4.553 10 H 0.096 0.904 11 C -0.124 4.124 12 N -0.534 5.534 13 Si 0.685 3.315 14 H -0.185 1.185 15 H -0.223 1.223 16 H -0.185 1.185 17 C -0.094 4.094 18 C -0.100 4.100 19 C -0.159 4.159 20 C -0.146 4.146 21 C -0.168 4.168 22 C 0.040 3.960 23 O -0.241 6.241 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.170 0.830 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.530 -8.154 4.308 13.997 hybrid contribution -0.594 0.217 -0.775 1.000 sum -11.124 -7.937 3.532 14.114 Atomic orbital electron populations 1.21727 0.95589 1.01121 1.02263 1.21628 0.96424 0.94994 1.02584 1.22006 0.94545 0.92841 0.86458 0.92494 1.21777 0.95124 0.99457 1.02083 1.21254 1.00439 0.93114 0.98628 1.18480 0.88604 0.95495 0.94535 0.93782 1.20981 1.14426 1.12581 1.07355 0.90441 1.24999 0.95204 0.94711 0.97450 1.69905 1.34369 1.17855 1.31226 0.87226 0.82287 0.80254 0.81712 1.18541 1.22255 1.18519 1.21139 0.97191 0.94113 0.96922 1.21593 0.97695 0.95266 0.95466 1.21253 0.93076 0.99377 1.02220 1.20827 0.98246 0.93106 1.02387 1.21086 0.95892 0.95314 1.04503 1.18598 0.92285 0.83048 1.02089 1.86197 1.87533 1.16627 1.33703 0.93073 0.93024 0.91969 0.90725 0.91096 0.91871 0.91450 0.93224 0.91378 0.92534 0.83034 0.86759 0.86802 0.86559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.80 37.16 0.36 -1.36 16 2 C -0.12 -1.49 5.61 -26.73 -0.15 -1.64 16 3 C 0.10 1.56 2.36 -27.52 -0.06 1.50 16 4 H 0.06 0.91 7.89 -51.93 -0.41 0.50 16 5 C -0.15 -2.42 4.82 -27.96 -0.13 -2.56 16 6 C -0.10 -1.93 5.06 -27.23 -0.14 -2.06 16 7 C 0.05 1.13 1.48 -92.51 -0.14 0.99 16 8 H 0.04 1.13 6.92 -51.93 -0.36 0.77 16 9 C -0.52 -14.08 7.92 -34.44 -0.27 -14.35 16 10 H 0.08 2.26 7.90 -52.49 -0.41 1.85 16 11 C 0.08 2.22 4.27 -17.82 -0.08 2.15 16 12 N -0.90 -26.70 13.96 55.43 0.77 -25.92 16 13 Si 0.86 22.07 24.08 -169.99 -4.09 17.97 16 14 H -0.26 -6.48 6.05 56.52 0.34 -6.13 16 15 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 16 H -0.26 -6.83 6.53 56.52 0.37 -6.46 16 17 C -0.09 -2.10 3.19 -104.34 -0.33 -2.44 16 18 C -0.08 -1.86 5.98 -39.60 -0.24 -2.10 16 19 C -0.14 -2.73 9.78 -39.50 -0.39 -3.11 16 20 C -0.13 -2.23 10.03 -39.58 -0.40 -2.63 16 21 C -0.15 -2.73 10.01 -39.36 -0.39 -3.13 16 22 C 0.08 1.72 5.61 -39.44 -0.22 1.50 16 23 O -0.32 -6.27 9.08 -20.21 -0.18 -6.46 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.80 7.77 -51.93 -0.40 0.39 16 27 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 30 H 0.07 1.15 8.00 -51.93 -0.42 0.73 16 31 H 0.05 0.97 7.90 -51.92 -0.41 0.56 16 32 H 0.07 1.35 7.84 -51.93 -0.41 0.94 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.15 3.74 5.59 -52.49 -0.29 3.45 16 35 H 0.11 1.92 8.06 -52.49 -0.42 1.50 16 36 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.12 1.83 8.06 -52.48 -0.42 1.40 16 LS Contribution 285.62 15.07 4.30 4.30 Total: -1.00 -29.78 285.62 -7.49 -37.27 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -5.72 Total: 2.08 kcal Atomic # 6 Polarization: -26.67 SS G_CDS: -2.58 Total: -29.25 kcal Atomic # 7 Polarization: -26.70 SS G_CDS: 0.77 Total: -25.92 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: -0.18 Total: -6.46 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.09 Total: 17.97 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.78 -7.49 -37.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259639387.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.449 kcal (2) G-P(sol) polarization free energy of solvation -29.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds