Wall clock time and date at job start Mon Mar 30 2020 05:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09004 * 109.17585 * 55.70196 * 3 2 1 5 5 C 1.51431 * 109.18989 * 174.99975 * 3 2 1 6 6 C 1.52140 * 113.46101 * 185.82646 * 5 3 2 7 7 C 1.52880 * 110.80255 * 292.46224 * 6 5 3 8 8 H 1.08996 * 109.59790 * 323.55926 * 7 6 5 9 9 C 1.50703 * 109.59982 * 203.08054 * 7 6 5 10 10 H 1.07995 * 120.00134 * 0.02562 * 9 7 6 11 11 C 1.37880 * 119.99695 * 180.02562 * 9 7 6 12 12 N 1.31512 * 119.99775 * 180.02562 * 11 9 7 13 13 Si 1.86800 * 120.00118 * 359.97438 * 11 9 7 14 14 H 1.48501 * 109.46785 * 90.00331 * 13 11 9 15 15 H 1.48501 * 109.47156 * 210.00288 * 13 11 9 16 16 H 1.48500 * 109.47222 * 330.00800 * 13 11 9 17 17 C 1.51653 * 108.68688 * 83.32074 * 7 6 5 18 18 C 1.38027 * 120.00597 * 111.43701 * 17 7 6 19 19 C 1.38389 * 119.63818 * 179.21821 * 18 17 7 20 20 C 1.38301 * 120.07146 * 359.88664 * 19 18 17 21 21 C 1.38169 * 120.22890 * 0.36264 * 20 19 18 22 22 C 1.37942 * 119.45015 * 291.26468 * 17 7 6 23 23 O 1.36146 * 120.36124 * 2.69659 * 22 17 7 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 29 29 H 1.08997 * 108.68072 * 306.85785 * 5 3 2 30 30 H 1.08996 * 108.68286 * 64.92752 * 5 3 2 31 31 H 1.09008 * 109.20780 * 52.80332 * 6 5 3 32 32 H 1.09005 * 109.21049 * 172.11664 * 6 5 3 33 33 H 0.97000 * 120.00267 * 179.97438 * 12 11 9 34 34 H 1.07990 * 120.18526 * 359.19165 * 18 17 7 35 35 H 1.08000 * 119.96770 * 179.91367 * 19 18 17 36 36 H 1.07998 * 119.88086 * 180.38687 * 20 19 18 37 37 H 1.08003 * 120.16102 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6124 1.9734 0.8505 5 6 3.5492 1.4368 0.1247 6 6 4.1497 2.8265 0.2759 7 6 3.9731 3.6369 -1.0083 8 1 4.0808 2.9811 -1.8722 9 6 5.0117 4.7275 -1.0647 10 1 5.7283 4.8327 -0.2636 11 6 5.0470 5.5910 -2.1391 12 7 5.9536 6.5423 -2.1885 13 14 3.8079 5.4085 -3.5251 14 1 2.6055 6.2266 -3.2248 15 1 4.4169 5.8721 -4.7977 16 1 3.4164 3.9819 -3.6544 17 6 2.5875 4.2535 -1.0072 18 6 2.4402 5.6200 -0.8804 19 6 1.1731 6.1761 -0.8966 20 6 0.0621 5.3651 -1.0414 21 6 0.2108 3.9969 -1.1631 22 6 1.4824 3.4383 -1.1371 23 8 1.6290 2.0867 -1.2104 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.8254 0.8404 0.9942 30 1 3.9713 0.9710 -0.7657 31 1 3.6542 3.3438 1.0976 32 1 5.2127 2.7355 0.4994 33 1 5.9787 7.1496 -2.9445 34 1 3.3089 6.2517 -0.7688 35 1 1.0515 7.2445 -0.7964 36 1 -0.9249 5.8030 -1.0599 37 1 -0.6574 3.3647 -1.2766 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259639387.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:54 Heat of formation + Delta-G solvation = -42.183241 kcal Electronic energy + Delta-G solvation = -18714.705469 eV Core-core repulsion = 16034.903647 eV Total energy + Delta-G solvation = -2679.801822 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.54323 -38.69622 -36.74463 -34.99017 -34.04229 -31.88131 -30.89356 -29.07064 -27.04120 -24.80833 -23.26018 -22.92493 -21.70972 -20.99967 -19.08841 -18.85169 -17.11346 -16.57762 -16.22695 -15.96930 -15.54684 -15.25405 -14.85590 -14.66015 -14.44015 -14.35001 -13.89479 -13.68392 -13.25634 -12.97178 -12.83255 -12.53937 -12.42258 -12.24378 -11.94705 -11.82378 -11.54555 -11.45446 -11.43670 -11.03629 -10.78145 -10.69095 -9.51577 -9.28955 -8.35200 -6.37356 0.34984 0.54402 1.28934 1.32675 1.42950 2.29347 2.56513 2.98931 3.08073 3.73422 4.01489 4.11255 4.13879 4.16800 4.25987 4.31949 4.44242 4.51902 4.60143 4.63900 4.75292 4.76922 4.94502 4.99639 5.06814 5.12050 5.13486 5.24463 5.29788 5.32907 5.46441 5.49470 5.54096 5.56523 5.71598 5.90017 6.04166 6.28194 6.63154 6.74717 7.27912 8.79225 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024113 B = 0.010259 C = 0.008335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.906762 B = 2728.576453 C = 3358.653411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C 0.092 3.908 4 H 0.059 0.941 5 C -0.142 4.142 6 C -0.094 4.094 7 C 0.049 3.951 8 H 0.021 0.979 9 C -0.514 4.514 10 H 0.043 0.957 11 C 0.040 3.960 12 N -0.939 5.939 13 Si 0.914 3.086 14 H -0.244 1.244 15 H -0.299 1.299 16 H -0.269 1.269 17 C -0.119 4.119 18 C -0.109 4.109 19 C -0.146 4.146 20 C -0.112 4.112 21 C -0.144 4.144 22 C 0.075 3.925 23 O -0.336 6.336 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.101 0.899 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.266 0.734 34 H 0.117 0.883 35 H 0.137 0.863 36 H 0.160 0.840 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.991 -9.632 4.917 17.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C 0.037 3.963 4 H 0.077 0.923 5 C -0.180 4.180 6 C -0.132 4.132 7 C 0.030 3.970 8 H 0.039 0.961 9 C -0.551 4.551 10 H 0.061 0.939 11 C -0.159 4.159 12 N -0.578 5.578 13 Si 0.741 3.259 14 H -0.168 1.168 15 H -0.226 1.226 16 H -0.194 1.194 17 C -0.120 4.120 18 C -0.127 4.127 19 C -0.164 4.164 20 C -0.129 4.129 21 C -0.162 4.162 22 C 0.031 3.969 23 O -0.254 6.254 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.065 0.935 27 H 0.119 0.881 28 H 0.086 0.914 29 H 0.117 0.883 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.135 0.865 35 H 0.155 0.845 36 H 0.178 0.822 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -13.952 -9.621 4.681 17.583 hybrid contribution 0.484 0.644 -0.788 1.127 sum -13.469 -8.977 3.893 16.648 Atomic orbital electron populations 1.21710 0.94590 1.02370 1.01788 1.21655 0.97273 0.92384 1.03751 1.22274 0.93892 0.94743 0.85394 0.92253 1.21743 0.95769 0.97148 1.03299 1.21187 1.00283 0.95027 0.96678 1.18328 0.88931 0.94284 0.95451 0.96084 1.21199 1.14473 1.13427 1.06028 0.93881 1.25559 0.96494 0.94406 0.99443 1.70013 1.36378 1.19197 1.32253 0.86333 0.81011 0.79679 0.78916 1.16845 1.22620 1.19390 1.20930 0.96794 0.94552 0.99675 1.21382 0.98223 0.95005 0.98119 1.21532 0.92275 1.00975 1.01572 1.21304 0.99529 0.92579 0.99519 1.21478 0.95762 0.96184 1.02824 1.18777 0.92648 0.83533 1.01897 1.86183 1.87647 1.15968 1.35571 0.92489 0.90969 0.93465 0.88059 0.91393 0.88349 0.92284 0.93285 0.92403 0.92437 0.86522 0.84503 0.82232 0.83341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.80 71.98 0.71 -2.14 16 2 C -0.11 -2.46 5.61 30.59 0.17 -2.29 16 3 C 0.09 2.74 2.36 30.08 0.07 2.81 16 4 H 0.06 1.74 7.89 -2.38 -0.02 1.72 16 5 C -0.14 -4.50 4.82 29.80 0.14 -4.36 16 6 C -0.09 -3.81 5.06 30.27 0.15 -3.66 16 7 C 0.05 2.39 1.48 -12.02 -0.02 2.37 16 8 H 0.02 1.12 6.92 -2.39 -0.02 1.10 16 9 C -0.51 -29.58 7.92 25.60 0.20 -29.37 16 10 H 0.04 2.70 7.90 -2.91 -0.02 2.68 16 11 C 0.04 2.32 4.27 84.66 0.36 2.69 16 12 N -0.94 -58.41 13.96 21.45 0.30 -58.11 16 13 Si 0.91 47.04 24.08 68.60 1.65 48.69 16 14 H -0.24 -11.81 6.05 99.48 0.60 -11.21 16 15 H -0.30 -15.29 7.11 99.48 0.71 -14.59 16 16 H -0.27 -14.07 6.53 99.48 0.65 -13.42 16 17 C -0.12 -5.37 3.19 -19.68 -0.06 -5.43 16 18 C -0.11 -4.93 5.98 22.26 0.13 -4.79 16 19 C -0.15 -5.28 9.78 22.32 0.22 -5.06 16 20 C -0.11 -3.40 10.03 22.27 0.22 -3.17 16 21 C -0.14 -4.70 10.01 22.41 0.22 -4.48 16 22 C 0.07 2.96 5.61 22.36 0.13 3.08 16 23 O -0.34 -12.41 9.08 -95.21 -0.86 -13.27 16 24 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.05 1.05 7.77 -2.38 -0.02 1.03 16 27 H 0.10 1.68 8.10 -2.39 -0.02 1.66 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.10 2.42 8.08 -2.39 -0.02 2.40 16 30 H 0.06 1.97 8.00 -2.39 -0.02 1.95 16 31 H 0.05 1.95 7.90 -2.38 -0.02 1.93 16 32 H 0.06 2.38 7.84 -2.38 -0.02 2.37 16 33 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 34 H 0.12 6.02 5.59 -2.92 -0.02 6.01 16 35 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 36 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 37 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -67.51 285.62 4.61 -62.90 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.87 Total: 13.59 kcal Atomic # 6 Polarization: -56.46 SS G_CDS: 2.65 Total: -53.81 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: 0.30 Total: -58.11 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -0.86 Total: -13.27 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 1.65 Total: 48.69 kcal Total: -67.51 4.61 -62.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259639387.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.721 kcal (2) G-P(sol) polarization free energy of solvation -67.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds