Wall clock time and date at job start Mon Mar 30 2020 05:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46697 * 2 1 4 4 H 1.09002 * 109.17835 * 305.00110 * 3 2 1 5 5 C 1.51427 * 109.13777 * 185.72910 * 3 2 1 6 6 C 1.52150 * 113.45656 * 174.16546 * 5 3 2 7 7 C 1.52889 * 110.79443 * 67.51057 * 6 5 3 8 8 H 1.09007 * 109.73075 * 36.55234 * 7 6 5 9 9 C 1.50699 * 109.59921 * 156.95060 * 7 6 5 10 10 H 1.07999 * 119.99745 * 359.20640 * 9 7 6 11 11 C 1.37875 * 119.99867 * 179.20937 * 9 7 6 12 12 N 1.31515 * 120.00209 * 359.97438 * 11 9 7 13 13 Si 1.86805 * 119.99908 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47152 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.46938 * 119.99997 * 13 11 9 16 16 H 1.48493 * 109.47111 * 239.99788 * 13 11 9 17 17 C 1.51645 * 108.69476 * 276.71251 * 7 6 5 18 18 C 1.38034 * 119.99012 * 247.53786 * 17 7 6 19 19 C 1.38387 * 119.63651 * 182.18303 * 18 17 7 20 20 C 1.38285 * 120.07968 * 0.02562 * 19 18 17 21 21 C 1.38170 * 120.22751 * 359.49356 * 20 19 18 22 22 C 1.37946 * 119.46773 * 68.79006 * 17 7 6 23 23 O 1.36152 * 120.33868 * 357.21353 * 22 17 7 24 24 H 1.08994 * 109.47149 * 59.99811 * 1 2 3 25 25 H 1.09004 * 109.47066 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47207 * 299.99845 * 1 2 3 27 27 H 1.09000 * 109.46760 * 239.99862 * 2 1 3 28 28 H 1.08994 * 109.46899 * 119.99699 * 2 1 3 29 29 H 1.08998 * 108.69062 * 295.19079 * 5 3 2 30 30 H 1.09000 * 108.69245 * 53.13938 * 5 3 2 31 31 H 1.09005 * 109.20865 * 307.17749 * 6 5 3 32 32 H 1.08989 * 109.17995 * 187.82803 * 6 5 3 33 33 H 0.96998 * 119.99734 * 179.97438 * 12 11 9 34 34 H 1.07993 * 120.18203 * 2.22329 * 18 17 7 35 35 H 1.08006 * 119.95831 * 179.97438 * 19 18 17 36 36 H 1.08000 * 119.89089 * 179.51345 * 20 19 18 37 37 H 1.07997 * 120.16554 * 180.11638 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6025 1.9769 -0.8433 5 6 3.5475 1.4362 -0.1428 6 6 4.1472 2.8262 -0.2957 7 6 3.9859 3.6317 0.9938 8 1 4.1048 2.9747 1.8554 9 6 5.0253 4.7218 1.0421 10 1 5.7402 4.8223 0.2389 11 6 5.0635 5.5909 2.1117 12 7 4.1926 5.4689 3.0896 13 14 6.3523 6.9419 2.1720 14 1 7.2070 6.8649 0.9601 15 1 5.6803 8.2652 2.2212 16 1 7.1943 6.7690 3.3828 17 6 2.6007 4.2484 1.0116 18 6 2.4535 5.6173 0.9133 19 6 1.1890 6.1760 0.9759 20 6 0.0803 5.3652 1.1367 21 6 0.2280 3.9943 1.2250 22 6 1.4967 3.4333 1.1526 23 8 1.6439 2.0813 1.2181 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.9799 0.9645 0.7395 30 1 3.8130 0.8432 -1.0180 31 1 3.6425 3.3470 -1.1094 32 1 5.2074 2.7348 -0.5313 33 1 4.2197 6.0802 3.8423 34 1 3.3204 6.2489 0.7875 35 1 1.0679 7.2465 0.8999 36 1 -0.9045 5.8050 1.1930 37 1 -0.6387 3.3619 1.3487 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259639393.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:56 Heat of formation + Delta-G solvation = -31.041413 kcal Electronic energy + Delta-G solvation = -18575.708681 eV Core-core repulsion = 15896.390004 eV Total energy + Delta-G solvation = -2679.318676 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.67784 -36.93250 -34.85030 -33.50964 -32.04366 -29.86441 -29.09171 -27.11005 -25.27884 -23.14696 -21.54947 -21.42806 -20.14469 -19.27237 -17.28858 -16.49609 -15.20522 -14.79647 -14.51152 -14.29371 -13.92071 -13.79579 -13.21880 -12.76865 -12.66756 -12.56042 -12.15465 -11.68278 -11.62870 -11.23745 -11.14662 -10.96321 -10.89628 -10.74218 -10.49638 -10.36652 -10.01547 -9.56753 -9.45453 -9.16903 -8.88824 -8.50722 -7.59328 -7.32095 -6.03789 -4.12768 2.28045 2.53116 3.25100 3.34719 3.37420 4.27016 4.37450 4.89051 5.08193 5.23051 5.28189 5.41467 5.68106 5.77357 5.79942 5.81315 5.92029 5.98106 6.06100 6.11563 6.24829 6.34459 6.39025 6.48283 6.54146 6.67570 6.73493 6.83112 6.88358 7.11186 7.16483 7.38409 7.60672 7.63219 7.78561 7.91718 8.01509 8.38953 8.49265 8.93448 9.50831 11.00973 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.026032 B = 0.008757 C = 0.007068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.346594 B = 3196.623762 C = 3960.641121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.098 3.902 4 H 0.054 0.946 5 C -0.144 4.144 6 C -0.106 4.106 7 C 0.078 3.922 8 H 0.046 0.954 9 C -0.522 4.522 10 H 0.060 0.940 11 C 0.064 3.936 12 N -0.871 5.871 13 Si 0.883 3.117 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.043 4.043 18 C -0.045 4.045 19 C -0.151 4.151 20 C -0.135 4.135 21 C -0.152 4.152 22 C 0.073 3.927 23 O -0.322 6.322 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.261 0.739 34 H 0.134 0.866 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.894 -5.492 -6.152 10.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C 0.042 3.958 4 H 0.072 0.928 5 C -0.182 4.182 6 C -0.143 4.143 7 C 0.060 3.940 8 H 0.064 0.936 9 C -0.560 4.560 10 H 0.078 0.922 11 C -0.140 4.140 12 N -0.507 5.507 13 Si 0.711 3.289 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.044 4.044 18 C -0.063 4.063 19 C -0.169 4.169 20 C -0.154 4.154 21 C -0.171 4.171 22 C 0.030 3.970 23 O -0.240 6.240 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.151 0.849 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.969 -5.544 -5.814 10.008 hybrid contribution 0.668 0.996 0.222 1.219 sum -5.301 -4.549 -5.592 8.948 Atomic orbital electron populations 1.21724 0.95667 1.00968 1.02292 1.21623 0.96360 0.95273 1.02370 1.21932 0.94428 0.92790 0.86699 0.92828 1.21746 0.95431 0.99338 1.01658 1.21409 0.99754 0.93565 0.99595 1.18008 0.88839 0.94407 0.92762 0.93618 1.21165 1.14851 1.14009 1.06010 0.92199 1.25006 0.95509 0.97802 0.95658 1.70059 1.34566 1.37105 1.08983 0.86662 0.82000 0.82077 0.78163 1.19659 1.20876 1.20938 1.20729 0.95967 0.93789 0.93887 1.21186 0.95989 0.95016 0.94103 1.21133 0.93497 0.98636 1.03665 1.20641 0.97815 0.93110 1.03797 1.20918 0.95659 0.95048 1.05488 1.18564 0.92480 0.82579 1.03393 1.86215 1.87946 1.17193 1.32612 0.93146 0.93160 0.91896 0.90996 0.91164 0.91594 0.92394 0.93655 0.92087 0.92866 0.84881 0.87762 0.87624 0.87338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.80 37.16 0.36 -1.52 16 2 C -0.12 -1.62 5.60 -26.73 -0.15 -1.77 16 3 C 0.10 1.69 2.35 -27.53 -0.06 1.62 16 4 H 0.05 0.93 7.90 -51.93 -0.41 0.52 16 5 C -0.14 -2.52 4.82 -27.96 -0.13 -2.66 16 6 C -0.11 -2.17 5.06 -27.22 -0.14 -2.31 16 7 C 0.08 1.93 1.90 -92.52 -0.18 1.76 16 8 H 0.05 1.28 7.89 -51.92 -0.41 0.87 16 9 C -0.52 -13.77 7.39 -34.44 -0.25 -14.03 16 10 H 0.06 1.56 7.65 -52.49 -0.40 1.15 16 11 C 0.06 1.70 3.75 -17.82 -0.07 1.63 16 12 N -0.87 -24.47 11.49 55.43 0.64 -23.84 16 13 Si 0.88 20.55 29.54 -169.99 -5.02 15.53 16 14 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 17 C -0.04 -1.03 4.39 -104.34 -0.46 -1.49 16 18 C -0.04 -1.07 7.69 -39.60 -0.30 -1.37 16 19 C -0.15 -3.15 10.05 -39.51 -0.40 -3.55 16 20 C -0.14 -2.62 10.03 -39.59 -0.40 -3.02 16 21 C -0.15 -3.09 10.01 -39.36 -0.39 -3.48 16 22 C 0.07 1.64 5.61 -39.44 -0.22 1.41 16 23 O -0.32 -6.77 9.11 -20.22 -0.18 -6.95 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.88 7.79 -51.93 -0.40 0.48 16 27 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 1.20 8.01 -51.93 -0.42 0.79 16 30 H 0.06 0.85 8.07 -51.93 -0.42 0.43 16 31 H 0.04 0.91 7.90 -51.93 -0.41 0.50 16 32 H 0.06 1.22 7.84 -51.93 -0.41 0.81 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.13 3.36 5.61 -52.49 -0.29 3.06 16 35 H 0.10 1.91 8.06 -52.48 -0.42 1.49 16 36 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.11 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 293.57 15.07 4.42 4.42 Total: -1.00 -28.35 293.57 -8.60 -36.95 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.66 Total: 2.66 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: -2.79 Total: -28.78 kcal Atomic # 7 Polarization: -24.47 SS G_CDS: 0.64 Total: -23.84 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -0.18 Total: -6.95 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.35 -8.60 -36.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259639393.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.909 kcal (2) G-P(sol) polarization free energy of solvation -28.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds