Wall clock time and date at job start Mon Mar 30 2020 05:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46697 * 2 1 4 4 H 1.09002 * 109.17835 * 305.00110 * 3 2 1 5 5 C 1.51427 * 109.13777 * 185.72910 * 3 2 1 6 6 C 1.52150 * 113.45656 * 174.16546 * 5 3 2 7 7 C 1.52889 * 110.79443 * 67.51057 * 6 5 3 8 8 H 1.09007 * 109.73075 * 36.55234 * 7 6 5 9 9 C 1.50699 * 109.59921 * 156.95060 * 7 6 5 10 10 H 1.07999 * 119.99745 * 359.20640 * 9 7 6 11 11 C 1.37875 * 119.99867 * 179.20937 * 9 7 6 12 12 N 1.31515 * 120.00209 * 359.97438 * 11 9 7 13 13 Si 1.86805 * 119.99908 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47152 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.46938 * 119.99997 * 13 11 9 16 16 H 1.48493 * 109.47111 * 239.99788 * 13 11 9 17 17 C 1.51645 * 108.69476 * 276.71251 * 7 6 5 18 18 C 1.38034 * 119.99012 * 247.53786 * 17 7 6 19 19 C 1.38387 * 119.63651 * 182.18303 * 18 17 7 20 20 C 1.38285 * 120.07968 * 0.02562 * 19 18 17 21 21 C 1.38170 * 120.22751 * 359.49356 * 20 19 18 22 22 C 1.37946 * 119.46773 * 68.79006 * 17 7 6 23 23 O 1.36152 * 120.33868 * 357.21353 * 22 17 7 24 24 H 1.08994 * 109.47149 * 59.99811 * 1 2 3 25 25 H 1.09004 * 109.47066 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47207 * 299.99845 * 1 2 3 27 27 H 1.09000 * 109.46760 * 239.99862 * 2 1 3 28 28 H 1.08994 * 109.46899 * 119.99699 * 2 1 3 29 29 H 1.08998 * 108.69062 * 295.19079 * 5 3 2 30 30 H 1.09000 * 108.69245 * 53.13938 * 5 3 2 31 31 H 1.09005 * 109.20865 * 307.17749 * 6 5 3 32 32 H 1.08989 * 109.17995 * 187.82803 * 6 5 3 33 33 H 0.96998 * 119.99734 * 179.97438 * 12 11 9 34 34 H 1.07993 * 120.18203 * 2.22329 * 18 17 7 35 35 H 1.08006 * 119.95831 * 179.97438 * 19 18 17 36 36 H 1.08000 * 119.89089 * 179.51345 * 20 19 18 37 37 H 1.07997 * 120.16554 * 180.11638 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6025 1.9769 -0.8433 5 6 3.5475 1.4362 -0.1428 6 6 4.1472 2.8262 -0.2957 7 6 3.9859 3.6317 0.9938 8 1 4.1048 2.9747 1.8554 9 6 5.0253 4.7218 1.0421 10 1 5.7402 4.8223 0.2389 11 6 5.0635 5.5909 2.1117 12 7 4.1926 5.4689 3.0896 13 14 6.3523 6.9419 2.1720 14 1 7.2070 6.8649 0.9601 15 1 5.6803 8.2652 2.2212 16 1 7.1943 6.7690 3.3828 17 6 2.6007 4.2484 1.0116 18 6 2.4535 5.6173 0.9133 19 6 1.1890 6.1760 0.9759 20 6 0.0803 5.3652 1.1367 21 6 0.2280 3.9943 1.2250 22 6 1.4967 3.4333 1.1526 23 8 1.6439 2.0813 1.2181 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.9799 0.9645 0.7395 30 1 3.8130 0.8432 -1.0180 31 1 3.6425 3.3470 -1.1094 32 1 5.2074 2.7348 -0.5313 33 1 4.2197 6.0802 3.8423 34 1 3.3204 6.2489 0.7875 35 1 1.0679 7.2465 0.8999 36 1 -0.9045 5.8050 1.1930 37 1 -0.6387 3.3619 1.3487 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259639393.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:55 Heat of formation + Delta-G solvation = -45.305533 kcal Electronic energy + Delta-G solvation = -18576.327219 eV Core-core repulsion = 15896.390004 eV Total energy + Delta-G solvation = -2679.937215 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.27753 -38.47598 -36.61667 -34.90763 -33.81294 -31.44939 -30.68382 -28.84335 -26.88138 -24.89414 -23.10682 -22.81630 -21.59337 -21.02005 -18.84741 -18.46430 -16.90417 -16.38400 -16.32625 -15.84920 -15.37523 -15.10957 -14.58837 -14.49679 -14.34899 -14.17993 -13.62673 -13.32802 -13.09325 -12.77849 -12.74510 -12.62550 -12.37908 -12.29535 -12.06284 -11.85015 -11.46742 -11.40421 -11.16412 -10.87084 -10.58806 -10.51231 -9.28481 -9.02100 -8.08614 -6.24197 0.62860 0.86968 1.37883 1.41381 1.51465 2.41078 2.78079 3.17279 3.26309 3.78804 4.06423 4.21630 4.28454 4.32201 4.38240 4.43294 4.54439 4.59181 4.67119 4.79786 4.90279 5.01197 5.05541 5.09216 5.12085 5.18174 5.22157 5.31029 5.43460 5.48526 5.51311 5.60247 5.75120 5.83891 5.92897 6.08983 6.24052 6.45322 6.81142 6.94941 7.42921 8.95410 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.026032 B = 0.008757 C = 0.007068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.346594 B = 3196.623762 C = 3960.641121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C 0.092 3.908 4 H 0.055 0.945 5 C -0.140 4.140 6 C -0.101 4.101 7 C 0.078 3.922 8 H 0.000 1.000 9 C -0.535 4.535 10 H 0.057 0.943 11 C 0.024 3.976 12 N -0.901 5.901 13 Si 0.944 3.056 14 H -0.265 1.265 15 H -0.278 1.278 16 H -0.284 1.284 17 C -0.072 4.072 18 C -0.069 4.069 19 C -0.156 4.156 20 C -0.124 4.124 21 C -0.155 4.155 22 C 0.061 3.939 23 O -0.339 6.339 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.043 0.957 27 H 0.102 0.898 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.095 0.905 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.259 0.741 34 H 0.109 0.891 35 H 0.128 0.872 36 H 0.148 0.852 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.292 -5.907 -7.289 11.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C 0.036 3.964 4 H 0.073 0.927 5 C -0.178 4.178 6 C -0.139 4.139 7 C 0.060 3.940 8 H 0.018 0.982 9 C -0.573 4.573 10 H 0.075 0.925 11 C -0.176 4.176 12 N -0.538 5.538 13 Si 0.769 3.231 14 H -0.190 1.190 15 H -0.203 1.203 16 H -0.210 1.210 17 C -0.073 4.073 18 C -0.087 4.087 19 C -0.175 4.175 20 C -0.142 4.142 21 C -0.173 4.173 22 C 0.018 3.982 23 O -0.257 6.257 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.062 0.938 27 H 0.120 0.880 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.114 0.886 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.127 0.873 35 H 0.146 0.854 36 H 0.166 0.834 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.362 -5.968 -6.969 11.764 hybrid contribution 1.081 1.091 0.561 1.635 sum -6.281 -4.877 -6.408 10.213 Atomic orbital electron populations 1.21704 0.94694 1.02333 1.01651 1.21651 0.97204 0.92605 1.03585 1.22221 0.94095 0.94682 0.85374 0.92730 1.21716 0.95766 0.97544 1.02735 1.21323 1.00057 0.95035 0.97456 1.17877 0.89559 0.93744 0.92863 0.98232 1.21452 1.15229 1.14671 1.05979 0.92524 1.25636 0.97109 0.99639 0.95236 1.70199 1.36183 1.37948 1.09484 0.85721 0.79688 0.79587 0.78064 1.18957 1.20344 1.21044 1.20705 0.96022 0.94384 0.96145 1.21096 0.96683 0.94791 0.96125 1.21409 0.92793 1.00200 1.03055 1.21080 0.99141 0.92622 1.01374 1.21271 0.95575 0.95977 1.04491 1.18789 0.92953 0.83189 1.03277 1.86184 1.88132 1.16557 1.34808 0.92503 0.90812 0.93802 0.88007 0.91633 0.92909 0.88616 0.93570 0.92216 0.93205 0.87317 0.85369 0.83414 0.84669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.80 71.98 0.71 -2.59 16 2 C -0.11 -2.82 5.60 30.60 0.17 -2.65 16 3 C 0.09 3.07 2.35 30.08 0.07 3.14 16 4 H 0.05 1.81 7.90 -2.39 -0.02 1.79 16 5 C -0.14 -4.83 4.82 29.80 0.14 -4.68 16 6 C -0.10 -4.24 5.06 30.28 0.15 -4.09 16 7 C 0.08 4.03 1.90 -12.02 -0.02 4.00 16 8 H 0.00 -0.02 7.89 -2.38 -0.02 -0.03 16 9 C -0.54 -29.32 7.39 25.60 0.19 -29.13 16 10 H 0.06 3.04 7.65 -2.91 -0.02 3.02 16 11 C 0.02 1.34 3.75 84.65 0.32 1.65 16 12 N -0.90 -52.36 11.49 21.45 0.25 -52.11 16 13 Si 0.94 43.13 29.54 68.60 2.03 45.16 16 14 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 15 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 16 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 17 C -0.07 -3.56 4.39 -19.68 -0.09 -3.64 16 18 C -0.07 -3.34 7.69 22.26 0.17 -3.17 16 19 C -0.16 -6.37 10.05 22.32 0.22 -6.14 16 20 C -0.12 -4.49 10.03 22.26 0.22 -4.27 16 21 C -0.15 -5.99 10.01 22.41 0.22 -5.76 16 22 C 0.06 2.75 5.61 22.36 0.13 2.87 16 23 O -0.34 -14.25 9.11 -95.28 -0.87 -15.12 16 24 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 26 H 0.04 1.15 7.79 -2.39 -0.02 1.13 16 27 H 0.10 1.95 8.09 -2.39 -0.02 1.93 16 28 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.05 1.95 8.01 -2.39 -0.02 1.93 16 30 H 0.10 2.56 8.07 -2.39 -0.02 2.54 16 31 H 0.05 1.89 7.90 -2.38 -0.02 1.87 16 32 H 0.06 2.44 7.84 -2.39 -0.02 2.42 16 33 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 34 H 0.11 5.71 5.61 -2.91 -0.02 5.69 16 35 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 36 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 37 H 0.14 4.44 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -63.51 293.57 5.05 -58.47 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 1.03 Total: 18.06 kcal Atomic # 6 Polarization: -57.07 SS G_CDS: 2.61 Total: -54.46 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.25 Total: -52.11 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.87 Total: -15.12 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -63.51 5.05 -58.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259639393.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.161 kcal (2) G-P(sol) polarization free energy of solvation -63.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds