Wall clock time and date at job start Mon Mar 30 2020 05:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99871 * 2 1 4 4 H 1.48496 * 109.47267 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47236 * 300.00046 * 3 2 1 6 6 H 1.48505 * 109.47274 * 60.00048 * 3 2 1 7 7 C 1.37878 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00082 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99769 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46883 * 185.10018 * 9 7 2 11 11 H 1.09005 * 109.47348 * 305.51724 * 10 9 7 12 12 C 1.50695 * 109.47171 * 65.52337 * 10 9 7 13 13 C 1.38684 * 120.41629 * 259.99891 * 12 10 9 14 14 C 1.38626 * 118.41719 * 179.75200 * 13 12 10 15 15 C 1.38228 * 119.16478 * 0.25109 * 14 13 12 16 16 N 1.31857 * 120.76316 * 0.02562 * 15 14 13 17 17 C 1.31889 * 121.72587 * 359.97438 * 16 15 14 18 18 N 1.46900 * 109.47124 * 185.52119 * 10 9 7 19 19 C 1.48537 * 111.00017 * 58.85542 * 18 10 9 20 20 C 1.54932 * 103.22874 * 159.72339 * 19 18 10 21 21 C 1.54600 * 102.92170 * 322.58112 * 20 19 18 22 22 C 1.47899 * 111.00182 * 176.24470 * 18 10 9 23 23 H 0.96996 * 119.99699 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47171 * 65.10516 * 9 7 2 25 25 H 1.08991 * 109.47702 * 305.10241 * 9 7 2 26 26 H 1.07996 * 120.78694 * 0.02562 * 13 12 10 27 27 H 1.08004 * 120.41564 * 180.27296 * 14 13 12 28 28 H 1.07997 * 119.62225 * 180.02562 * 15 14 13 29 29 H 1.07994 * 119.61605 * 180.02562 * 17 16 15 30 30 H 1.09010 * 110.66331 * 278.15456 * 19 18 10 31 31 H 1.09002 * 110.66723 * 41.28182 * 19 18 10 32 32 H 1.09001 * 110.72523 * 204.22877 * 20 19 18 33 33 H 1.08998 * 110.72804 * 80.94416 * 20 19 18 34 34 H 1.09000 * 110.30852 * 263.04663 * 21 20 19 35 35 H 1.08998 * 110.30501 * 140.87523 * 21 20 19 36 36 H 1.09000 * 109.92093 * 333.51425 * 22 18 10 37 37 H 1.09004 * 109.91347 * 94.80488 * 22 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2404 -3.6592 0.1271 11 1 2.9926 -3.5833 -0.6582 12 6 2.9129 -3.5999 1.4743 13 6 4.1869 -3.0665 1.6003 14 6 4.7643 -3.0278 2.8600 15 6 4.0582 -3.5233 3.9401 16 7 2.8506 -4.0285 3.7821 17 6 2.2704 -4.0816 2.5989 18 7 1.5210 -4.9331 -0.0055 19 6 0.8214 -5.0158 -1.3132 20 6 0.5927 -6.5370 -1.4973 21 6 1.8860 -7.1538 -0.9168 22 6 2.4585 -6.0767 0.0231 23 1 -0.4849 0.8400 0.0004 24 1 0.6944 -2.5973 -0.9325 25 1 0.5580 -2.5186 0.8404 26 1 4.7147 -2.6864 0.7382 27 1 5.7531 -2.6152 2.9958 28 1 4.5008 -3.4964 4.9249 29 1 1.2799 -4.5022 2.5086 30 1 -0.1303 -4.4856 -1.2745 31 1 1.4503 -4.6218 -2.1115 32 1 0.4869 -6.7862 -2.5532 33 1 -0.2793 -6.8672 -0.9328 34 1 2.5932 -7.3723 -1.7169 35 1 1.6548 -8.0602 -0.3572 36 1 3.4406 -5.7607 -0.3287 37 1 2.5332 -6.4702 1.0369 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259689657.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:59 Heat of formation + Delta-G solvation = 13.347678 kcal Electronic energy + Delta-G solvation = -18084.129134 eV Core-core repulsion = 15439.028064 eV Total energy + Delta-G solvation = -2645.101070 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.26384 -39.60843 -36.06163 -34.31941 -32.94944 -31.25992 -30.44298 -29.43846 -26.45991 -24.49155 -24.20781 -22.72402 -21.50030 -20.98759 -18.63621 -17.91711 -17.18709 -16.88532 -16.56518 -16.41104 -15.65466 -15.00454 -14.88461 -14.46351 -14.32886 -13.90318 -13.80530 -13.67954 -13.24132 -13.16983 -12.87642 -12.58910 -12.43056 -12.18959 -11.98411 -11.88357 -11.49675 -11.35570 -11.22803 -10.58847 -10.54535 -10.28759 -9.67098 -9.31290 -8.19879 -6.28656 0.35674 0.48908 1.36383 1.37517 1.48867 2.38000 2.97268 3.13811 3.15356 3.64179 3.79504 3.82717 4.04050 4.08604 4.16196 4.26026 4.34948 4.39330 4.54080 4.65129 4.72485 4.76040 4.84431 4.96776 5.01773 5.03052 5.10143 5.21735 5.28609 5.36683 5.41205 5.50973 5.60817 5.74233 5.93660 6.03515 6.16361 6.31190 6.85712 7.15999 7.39084 8.92331 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016442 B = 0.009240 C = 0.006551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.514665 B = 3029.426155 C = 4273.304742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.955 3.045 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.284 1.284 7 C -0.525 4.525 8 H 0.062 0.938 9 C 0.049 3.951 10 C 0.136 3.864 11 H 0.035 0.965 12 C -0.100 4.100 13 C -0.082 4.082 14 C -0.168 4.168 15 C 0.074 3.926 16 N -0.511 5.511 17 C 0.102 3.898 18 N -0.524 5.524 19 C 0.036 3.964 20 C -0.113 4.113 21 C -0.121 4.121 22 C 0.036 3.964 23 H 0.261 0.739 24 H 0.000 1.000 25 H -0.008 1.008 26 H 0.133 0.867 27 H 0.165 0.835 28 H 0.183 0.817 29 H 0.144 0.856 30 H 0.063 0.937 31 H 0.036 0.964 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.035 0.965 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.350 -11.392 0.166 14.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.780 3.220 4 H -0.183 1.183 5 H -0.204 1.204 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.080 0.920 9 C 0.012 3.988 10 C 0.027 3.973 11 H 0.053 0.947 12 C -0.102 4.102 13 C -0.109 4.109 14 C -0.187 4.187 15 C -0.083 4.083 16 N -0.220 5.220 17 C -0.054 4.054 18 N -0.249 5.249 19 C -0.092 4.092 20 C -0.151 4.151 21 C -0.159 4.159 22 C -0.091 4.091 23 H 0.070 0.930 24 H 0.018 0.982 25 H 0.010 0.990 26 H 0.151 0.849 27 H 0.182 0.818 28 H 0.200 0.800 29 H 0.161 0.839 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.053 0.947 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.398 -11.637 1.329 13.853 hybrid contribution 0.889 1.755 -1.435 2.435 sum 8.287 -9.882 -0.106 12.897 Atomic orbital electron populations 1.70106 1.07669 1.27417 1.51884 1.25850 0.95616 1.02918 0.95078 0.85547 0.79431 0.79489 0.77555 1.18253 1.20427 1.21001 1.21532 0.93393 0.91631 1.49837 0.91950 1.18923 0.93375 0.91344 0.95197 1.20620 0.94431 0.90122 0.92085 0.94703 1.20671 0.94815 0.98162 0.96564 1.21665 0.94291 0.95847 0.99057 1.22367 1.02689 1.01106 0.92580 1.23218 0.90172 0.94560 1.00369 1.67668 1.12022 1.16552 1.25760 1.22429 0.99333 0.96423 0.87234 1.64696 1.26078 1.01721 1.32376 1.23174 0.98413 0.98098 0.89497 1.22466 0.98369 0.92408 1.01894 1.22379 0.97046 0.97882 0.98596 1.22852 0.94234 0.91684 1.00379 0.92992 0.98166 0.98954 0.84865 0.81784 0.80034 0.83856 0.91853 0.94534 0.89251 0.90649 0.90310 0.89644 0.94651 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.66 13.29 21.45 0.28 -56.38 16 2 C 0.00 0.18 5.46 84.65 0.46 0.65 16 3 Si 0.95 44.20 29.54 68.60 2.03 46.23 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 7 C -0.53 -29.08 8.53 25.60 0.22 -28.86 16 8 H 0.06 3.28 6.82 -2.91 -0.02 3.26 16 9 C 0.05 2.56 4.39 29.85 0.13 2.69 16 10 C 0.14 5.68 1.41 44.17 0.06 5.74 16 11 H 0.04 1.47 7.87 -2.38 -0.02 1.45 16 12 C -0.10 -3.95 3.75 -19.77 -0.07 -4.02 16 13 C -0.08 -2.87 8.99 22.47 0.20 -2.67 16 14 C -0.17 -4.87 10.11 22.36 0.23 -4.65 16 15 C 0.07 2.23 11.18 84.69 0.95 3.18 16 16 N -0.51 -18.98 10.36 -195.84 -2.03 -21.01 16 17 C 0.10 4.07 10.19 84.67 0.86 4.93 16 18 N -0.52 -18.88 4.40 -862.23 -3.79 -22.67 16 19 C 0.04 1.19 5.36 86.65 0.46 1.66 16 20 C -0.11 -2.72 7.06 31.80 0.22 -2.50 16 21 C -0.12 -2.68 6.93 31.47 0.22 -2.47 16 22 C 0.04 1.06 5.81 86.45 0.50 1.56 16 23 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 24 H 0.00 0.01 6.63 -2.39 -0.02 -0.01 16 25 H -0.01 -0.48 8.14 -2.39 -0.02 -0.49 16 26 H 0.13 4.37 7.91 -2.91 -0.02 4.35 16 27 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 28 H 0.18 3.99 8.06 -2.91 -0.02 3.97 16 29 H 0.14 5.91 7.72 -2.91 -0.02 5.89 16 30 H 0.06 2.36 7.53 -2.38 -0.02 2.34 16 31 H 0.04 1.24 8.01 -2.39 -0.02 1.22 16 32 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.04 1.04 7.67 -2.39 -0.02 1.02 16 37 H 0.07 2.03 8.02 -2.38 -0.02 2.01 16 Total: -1.00 -66.12 301.38 1.97 -64.15 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 1.03 Total: 14.44 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: 4.45 Total: -24.76 kcal Atomic # 7 Polarization: -94.52 SS G_CDS: -5.53 Total: -100.06 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -66.12 1.97 -64.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259689657.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.494 kcal (2) G-P(sol) polarization free energy of solvation -66.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds