Wall clock time and date at job start Mon Mar 30 2020 05:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00460 * 2 1 4 4 H 1.48499 * 109.47532 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46911 * 300.00348 * 3 2 1 6 6 H 1.48502 * 109.47074 * 59.99948 * 3 2 1 7 7 C 1.37884 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00090 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99665 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.46171 * 299.98448 * 9 7 2 11 11 C 1.53116 * 109.46301 * 180.02562 * 9 7 2 12 12 C 1.53361 * 109.50447 * 169.70611 * 11 9 7 13 13 C 1.50837 * 108.37858 * 49.94996 * 12 11 9 14 14 C 1.39293 * 127.89826 * 163.35855 * 13 12 11 15 15 C 1.50698 * 125.95771 * 0.15860 * 14 13 12 16 16 C 1.53003 * 109.47308 * 269.71328 * 15 14 13 17 17 C 1.53000 * 117.49792 * 175.00072 * 16 15 14 18 18 C 1.53002 * 60.02940 * 107.48056 * 17 16 15 19 19 N 1.31063 * 108.08092 * 179.89612 * 14 13 12 20 20 N 1.40299 * 108.27151 * 0.26316 * 19 14 13 21 21 H 0.97000 * 126.09484 * 179.97438 * 20 19 14 22 22 C 1.34329 * 107.81433 * 359.94743 * 20 19 14 23 23 C 1.50823 * 128.03392 * 180.16986 * 22 20 19 24 24 H 0.96999 * 119.99597 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46519 * 49.69291 * 11 9 7 26 26 H 1.08999 * 109.46125 * 289.71087 * 11 9 7 27 27 H 1.09011 * 109.68158 * 290.23354 * 12 11 9 28 28 H 1.08995 * 109.68756 * 169.67874 * 12 11 9 29 29 H 1.09011 * 109.47086 * 149.71273 * 15 14 13 30 30 H 1.09003 * 109.47674 * 29.71686 * 15 14 13 31 31 H 1.08999 * 115.54778 * 29.33434 * 16 15 14 32 32 H 1.09002 * 117.49833 * 214.98161 * 17 16 15 33 33 H 1.09002 * 117.49953 * 359.97438 * 17 16 15 34 34 H 1.09000 * 117.49996 * 107.50493 * 18 17 16 35 35 H 1.08999 * 117.49664 * 252.51862 * 18 17 16 36 36 H 1.08999 * 109.68262 * 283.14432 * 23 22 20 37 37 H 1.08999 * 109.67986 * 43.69557 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6249 -2.5570 0.8898 11 6 2.2460 -3.6629 -0.0005 12 6 1.4978 -4.9764 0.2578 13 6 0.3228 -5.0478 -0.6852 14 6 -0.4324 -6.1669 -1.0282 15 6 -0.2247 -7.5670 -0.5108 16 6 0.7392 -8.3144 -1.4345 17 6 1.1720 -9.7207 -1.0150 18 6 0.1982 -9.5365 -2.1806 19 7 -1.3585 -5.7888 -1.8750 20 7 -1.2132 -4.4116 -2.0998 21 1 -1.7638 -3.8666 -2.6835 22 6 -0.1758 -3.9820 -1.3623 23 6 0.3741 -2.5814 -1.2590 24 1 -0.4849 0.8401 -0.0004 25 1 2.9874 -3.5069 0.7832 26 1 2.7455 -3.7136 -0.9680 27 1 1.1434 -5.0005 1.2884 28 1 2.1643 -5.8201 0.0785 29 1 -1.1809 -8.0898 -0.4835 30 1 0.1948 -7.5245 0.4944 31 1 1.4733 -7.6942 -1.9488 32 1 2.1909 -10.0258 -1.2538 33 1 0.7705 -10.1132 -0.0808 34 1 0.5763 -9.7206 -3.1862 35 1 -0.8442 -9.8077 -2.0132 36 1 0.9648 -2.3526 -2.1460 37 1 -0.4472 -1.8702 -1.1708 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259700090.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:53 Heat of formation + Delta-G solvation = 67.614352 kcal Electronic energy + Delta-G solvation = -17651.869343 eV Core-core repulsion = 15009.121453 eV Total energy + Delta-G solvation = -2642.747890 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.87130 -37.42849 -35.90545 -32.81813 -32.18419 -28.92862 -28.73078 -27.32479 -24.90702 -22.36497 -22.31267 -21.02704 -20.54652 -19.23330 -17.83214 -16.73868 -16.11772 -15.53077 -14.73958 -14.53382 -14.01357 -13.30264 -13.11286 -12.98657 -12.76417 -12.48445 -12.10953 -11.88241 -11.52584 -11.47569 -11.13591 -11.03064 -10.83379 -10.57186 -10.44160 -10.23600 -9.93106 -9.74039 -9.62251 -9.12163 -8.92460 -8.68184 -8.41102 -7.52205 -6.07721 -4.12968 2.54547 3.25347 3.33140 3.34633 3.38417 3.45691 3.85093 4.38627 4.76743 4.92724 4.96080 5.22982 5.28134 5.51176 5.59508 5.61904 5.77645 5.86393 5.90524 5.95126 6.08980 6.10832 6.18005 6.32831 6.44290 6.49512 6.64994 6.75233 6.79902 6.96845 7.07323 7.28279 7.39606 7.61139 7.80468 7.97272 8.00751 8.32752 8.36760 8.92037 9.52850 10.99293 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.044503 B = 0.005178 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.016547 B = 5406.425681 C = 5822.977866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.059 0.941 9 C 0.057 3.943 10 H 0.032 0.968 11 C -0.110 4.110 12 C -0.036 4.036 13 C -0.248 4.248 14 C 0.082 3.918 15 C -0.004 4.004 16 C -0.138 4.138 17 C -0.182 4.182 18 C -0.180 4.180 19 N -0.319 5.319 20 N -0.479 5.479 21 H 0.432 0.568 22 C 0.116 3.884 23 C -0.053 4.053 24 H 0.260 0.740 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.399 -12.957 -2.223 13.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.551 4.551 8 H 0.077 0.923 9 C 0.038 3.962 10 H 0.050 0.950 11 C -0.147 4.147 12 C -0.074 4.074 13 C -0.259 4.259 14 C -0.083 4.083 15 C -0.043 4.043 16 C -0.157 4.157 17 C -0.219 4.219 18 C -0.217 4.217 19 N -0.143 5.143 20 N -0.185 5.185 21 H 0.275 0.725 22 C -0.013 4.013 23 C -0.093 4.093 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.123 0.877 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.741 -13.216 -2.923 13.556 hybrid contribution 0.651 1.594 -0.005 1.721 sum -0.090 -11.622 -2.928 11.986 Atomic orbital electron populations 1.69879 1.05943 1.26487 1.50898 1.25002 0.94853 0.99199 0.94947 0.86544 0.80231 0.83726 0.77568 1.19703 1.21096 1.21021 1.21274 0.93128 0.90339 1.50318 0.92253 1.18696 0.92452 0.92188 0.92835 0.94986 1.21699 0.98538 0.94283 1.00207 1.19968 0.93023 0.98140 0.96293 1.19764 1.05291 0.91567 1.09309 1.21739 0.94336 0.95722 0.96530 1.19465 0.98525 0.88591 0.97748 1.22195 1.01646 0.89757 1.02063 1.22973 0.99753 0.99891 0.99246 1.23020 0.99206 1.02885 0.96612 1.77233 1.24294 0.90478 1.22295 1.45991 1.27005 1.07191 1.38346 0.72476 1.22024 0.88568 0.98906 0.91822 1.20820 1.01234 0.86306 1.00903 0.92986 0.92806 0.93439 0.92444 0.92830 0.90884 0.89723 0.87676 0.88972 0.88813 0.89223 0.88869 0.91793 0.88102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.47 11.47 55.43 0.64 -23.83 16 2 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 3 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -13.44 8.52 -34.44 -0.29 -13.73 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.06 1.37 2.08 -91.40 -0.19 1.18 16 10 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16 11 C -0.11 -2.24 5.14 -26.48 -0.14 -2.37 16 12 C -0.04 -0.65 6.05 -27.63 -0.17 -0.82 16 13 C -0.25 -4.83 5.91 -105.05 -0.62 -5.46 16 14 C 0.08 1.47 6.42 -82.53 -0.53 0.94 16 15 C 0.00 -0.06 5.93 -27.88 -0.17 -0.22 16 16 C -0.14 -1.72 5.73 -90.58 -0.52 -2.24 16 17 C -0.18 -1.82 10.25 -26.73 -0.27 -2.09 16 18 C -0.18 -1.96 10.18 -26.69 -0.27 -2.23 16 19 N -0.32 -6.05 12.71 33.59 0.43 -5.62 16 20 N -0.48 -8.92 7.34 33.48 0.25 -8.67 16 21 H 0.43 6.79 8.96 -182.45 -1.64 5.16 16 22 C 0.12 2.38 7.08 -82.33 -0.58 1.80 16 23 C -0.05 -1.20 5.20 -27.51 -0.14 -1.34 16 24 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 25 H 0.05 1.06 8.11 -51.93 -0.42 0.64 16 26 H 0.05 0.96 8.11 -51.93 -0.42 0.54 16 27 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.96 7.88 -51.92 -0.41 0.55 16 30 H 0.08 1.08 8.06 -51.93 -0.42 0.66 16 31 H 0.11 1.46 8.07 -51.93 -0.42 1.04 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 0.97 8.03 -51.93 -0.42 0.56 16 36 H 0.06 1.44 8.13 -51.93 -0.42 1.02 16 37 H 0.10 2.48 6.43 -51.93 -0.33 2.15 16 LS Contribution 302.83 15.07 4.56 4.56 Total: -1.00 -28.37 302.83 -10.11 -38.48 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -6.97 Total: 4.61 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: -3.99 Total: -25.06 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 1.31 Total: -38.13 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.37 -10.11 -38.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259700090.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.099 kcal (2) G-P(sol) polarization free energy of solvation -28.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds