Wall clock time and date at job start Mon Mar 30 2020 05:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00460 * 2 1 4 4 H 1.48499 * 109.47532 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46911 * 300.00348 * 3 2 1 6 6 H 1.48502 * 109.47074 * 59.99948 * 3 2 1 7 7 C 1.37884 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00090 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99665 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.46171 * 299.98448 * 9 7 2 11 11 C 1.53116 * 109.46301 * 180.02562 * 9 7 2 12 12 C 1.53361 * 109.50447 * 169.70611 * 11 9 7 13 13 C 1.50837 * 108.37858 * 49.94996 * 12 11 9 14 14 C 1.39293 * 127.89826 * 163.35855 * 13 12 11 15 15 C 1.50698 * 125.95771 * 0.15860 * 14 13 12 16 16 C 1.53003 * 109.47308 * 269.71328 * 15 14 13 17 17 C 1.53000 * 117.49792 * 175.00072 * 16 15 14 18 18 C 1.53002 * 60.02940 * 107.48056 * 17 16 15 19 19 N 1.31063 * 108.08092 * 179.89612 * 14 13 12 20 20 N 1.40299 * 108.27151 * 0.26316 * 19 14 13 21 21 H 0.97000 * 126.09484 * 179.97438 * 20 19 14 22 22 C 1.34329 * 107.81433 * 359.94743 * 20 19 14 23 23 C 1.50823 * 128.03392 * 180.16986 * 22 20 19 24 24 H 0.96999 * 119.99597 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46519 * 49.69291 * 11 9 7 26 26 H 1.08999 * 109.46125 * 289.71087 * 11 9 7 27 27 H 1.09011 * 109.68158 * 290.23354 * 12 11 9 28 28 H 1.08995 * 109.68756 * 169.67874 * 12 11 9 29 29 H 1.09011 * 109.47086 * 149.71273 * 15 14 13 30 30 H 1.09003 * 109.47674 * 29.71686 * 15 14 13 31 31 H 1.08999 * 115.54778 * 29.33434 * 16 15 14 32 32 H 1.09002 * 117.49833 * 214.98161 * 17 16 15 33 33 H 1.09002 * 117.49953 * 359.97438 * 17 16 15 34 34 H 1.09000 * 117.49996 * 107.50493 * 18 17 16 35 35 H 1.08999 * 117.49664 * 252.51862 * 18 17 16 36 36 H 1.08999 * 109.68262 * 283.14432 * 23 22 20 37 37 H 1.08999 * 109.67986 * 43.69557 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6249 -2.5570 0.8898 11 6 2.2460 -3.6629 -0.0005 12 6 1.4978 -4.9764 0.2578 13 6 0.3228 -5.0478 -0.6852 14 6 -0.4324 -6.1669 -1.0282 15 6 -0.2247 -7.5670 -0.5108 16 6 0.7392 -8.3144 -1.4345 17 6 1.1720 -9.7207 -1.0150 18 6 0.1982 -9.5365 -2.1806 19 7 -1.3585 -5.7888 -1.8750 20 7 -1.2132 -4.4116 -2.0998 21 1 -1.7638 -3.8666 -2.6835 22 6 -0.1758 -3.9820 -1.3623 23 6 0.3741 -2.5814 -1.2590 24 1 -0.4849 0.8401 -0.0004 25 1 2.9874 -3.5069 0.7832 26 1 2.7455 -3.7136 -0.9680 27 1 1.1434 -5.0005 1.2884 28 1 2.1643 -5.8201 0.0785 29 1 -1.1809 -8.0898 -0.4835 30 1 0.1948 -7.5245 0.4944 31 1 1.4733 -7.6942 -1.9488 32 1 2.1909 -10.0258 -1.2538 33 1 0.7705 -10.1132 -0.0808 34 1 0.5763 -9.7206 -3.1862 35 1 -0.8442 -9.8077 -2.0132 36 1 0.9648 -2.3526 -2.1460 37 1 -0.4472 -1.8702 -1.1708 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259700090.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:53 Heat of formation + Delta-G solvation = 53.175944 kcal Electronic energy + Delta-G solvation = -17652.495440 eV Core-core repulsion = 15009.121453 eV Total energy + Delta-G solvation = -2643.373987 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.37008 -38.35557 -37.62742 -34.52885 -33.78180 -30.63383 -30.27024 -28.62855 -26.82960 -23.98009 -23.14032 -22.37893 -21.98642 -20.52134 -19.45184 -18.47927 -17.94793 -16.56368 -16.38328 -16.08921 -15.26836 -14.75444 -14.58284 -14.44896 -14.26753 -14.12985 -13.67911 -13.35629 -12.94778 -12.77968 -12.60283 -12.45054 -12.33248 -12.25573 -12.20097 -11.46278 -11.33003 -11.16911 -10.91211 -10.81711 -10.72638 -10.51316 -10.07847 -9.06888 -8.10366 -6.22965 1.02047 1.42103 1.45495 1.56034 1.86704 2.02287 2.44884 2.99797 3.18984 3.68236 3.97854 4.02024 4.15815 4.19966 4.29625 4.44126 4.50342 4.54111 4.72898 4.86899 4.88844 4.92618 4.94651 5.06467 5.08471 5.12010 5.16654 5.33439 5.35197 5.35674 5.41736 5.60334 5.70791 5.87525 5.95524 6.02916 6.36520 6.50612 6.84796 6.89393 7.46204 8.95372 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.044503 B = 0.005178 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.016547 B = 5406.425681 C = 5822.977866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.015 3.985 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.055 3.945 10 H -0.002 1.002 11 C -0.103 4.103 12 C -0.029 4.029 13 C -0.256 4.256 14 C 0.086 3.914 15 C -0.001 4.001 16 C -0.157 4.157 17 C -0.160 4.160 18 C -0.182 4.182 19 N -0.328 5.328 20 N -0.477 5.477 21 H 0.441 0.559 22 C 0.094 3.906 23 C -0.038 4.038 24 H 0.261 0.739 25 H 0.059 0.941 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.057 0.943 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.244 -14.614 -2.048 14.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.779 3.221 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.568 4.568 8 H 0.077 0.923 9 C 0.036 3.964 10 H 0.017 0.983 11 C -0.140 4.140 12 C -0.067 4.067 13 C -0.267 4.267 14 C -0.080 4.080 15 C -0.040 4.040 16 C -0.176 4.176 17 C -0.197 4.197 18 C -0.219 4.219 19 N -0.152 5.152 20 N -0.185 5.185 21 H 0.286 0.714 22 C -0.036 4.036 23 C -0.077 4.077 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.116 0.884 31 H 0.107 0.893 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.075 0.925 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.104 -14.876 -2.758 15.129 hybrid contribution 0.363 2.075 -0.062 2.108 sum 0.467 -12.800 -2.820 13.116 Atomic orbital electron populations 1.70011 1.07192 1.27147 1.51553 1.25728 0.95598 1.02327 0.94684 0.85580 0.79275 0.79829 0.77429 1.18985 1.20789 1.20914 1.21615 0.93306 0.91655 1.50248 0.92348 1.18640 0.92827 0.93080 0.91896 0.98332 1.21587 0.97889 0.94143 1.00421 1.19952 0.92831 0.97727 0.96215 1.20066 1.05719 0.91792 1.09085 1.22322 0.93081 0.97131 0.95480 1.19602 0.99567 0.86325 0.98525 1.22054 1.01869 0.90587 1.03118 1.23070 1.00221 0.97030 0.99388 1.23106 0.99859 1.01614 0.97294 1.77219 1.24859 0.90301 1.22810 1.45996 1.26726 1.07384 1.38344 0.71413 1.21751 0.90001 0.98196 0.93648 1.20413 1.00038 0.87316 0.99973 0.93023 0.92275 0.93416 0.91980 0.89891 0.89970 0.88371 0.89283 0.87831 0.87368 0.88869 0.88442 0.92507 0.90729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.56 11.47 21.45 0.25 -51.32 16 2 C 0.02 0.82 5.30 84.66 0.45 1.27 16 3 Si 0.95 42.39 29.54 68.60 2.03 44.42 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.53 -28.20 8.52 25.60 0.22 -27.99 16 8 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 9 C 0.05 2.68 2.08 -11.30 -0.02 2.65 16 10 H 0.00 -0.08 8.11 -2.39 -0.02 -0.10 16 11 C -0.10 -4.14 5.14 30.75 0.16 -3.98 16 12 C -0.03 -1.01 6.05 30.01 0.18 -0.83 16 13 C -0.26 -9.73 5.91 -20.14 -0.12 -9.85 16 14 C 0.09 2.94 6.42 42.93 0.28 3.21 16 15 C 0.00 -0.03 5.93 29.85 0.18 0.15 16 16 C -0.16 -3.54 5.73 -10.77 -0.06 -3.60 16 17 C -0.16 -2.66 10.25 30.60 0.31 -2.34 16 18 C -0.18 -3.47 10.18 30.62 0.31 -3.16 16 19 N -0.33 -12.13 12.71 -47.63 -0.61 -12.74 16 20 N -0.48 -17.79 7.34 -47.98 -0.35 -18.14 16 21 H 0.44 14.06 8.96 -213.19 -1.91 12.15 16 22 C 0.09 3.87 7.08 41.64 0.29 4.17 16 23 C -0.04 -1.76 5.20 30.09 0.16 -1.60 16 24 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 25 H 0.06 2.28 8.11 -2.39 -0.02 2.26 16 26 H 0.05 1.90 8.11 -2.39 -0.02 1.88 16 27 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 28 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.08 1.93 7.88 -2.38 -0.02 1.91 16 30 H 0.10 2.20 8.06 -2.39 -0.02 2.18 16 31 H 0.09 2.31 8.07 -2.39 -0.02 2.29 16 32 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.10 1.77 8.03 -2.39 -0.02 1.75 16 36 H 0.06 2.65 8.13 -2.39 -0.02 2.63 16 37 H 0.07 3.84 6.43 -2.39 -0.02 3.83 16 Total: -1.00 -60.52 302.83 2.80 -57.73 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: -0.85 Total: 21.96 kcal Atomic # 6 Polarization: -44.24 SS G_CDS: 2.33 Total: -41.90 kcal Atomic # 7 Polarization: -81.48 SS G_CDS: -0.71 Total: -82.20 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -60.52 2.80 -57.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259700090.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.901 kcal (2) G-P(sol) polarization free energy of solvation -60.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds